Wall clock time and date at job start Tue Mar 31 2020 19:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35131 * 126.44387 * 2 1 4 4 O 1.33932 * 108.76913 * 179.75851 * 3 2 1 5 5 C 1.34911 * 109.38283 * 0.40170 * 4 3 2 6 6 C 1.46660 * 125.98461 * 179.86639 * 5 4 3 7 7 O 1.21696 * 119.99756 * 179.69274 * 6 5 4 8 8 N 1.34772 * 120.00539 * 359.69033 * 6 5 4 9 9 C 1.46497 * 120.00408 * 180.02562 * 8 6 5 10 10 C 1.52997 * 110.27342 * 302.08686 * 9 8 6 11 11 C 1.54592 * 110.30796 * 64.28535 * 9 8 6 12 12 C 1.54934 * 102.92538 * 96.96012 * 11 9 8 13 13 N 1.48534 * 103.22627 * 37.41204 * 12 11 9 14 14 C 1.46903 * 110.99950 * 200.28082 * 13 12 11 15 15 C 1.50694 * 109.47066 * 287.39612 * 14 13 12 16 16 O 1.21297 * 120.00199 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99988 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99735 * 179.72439 * 17 15 14 19 19 H 1.07998 * 120.00618 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99464 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99669 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47319 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46816 * 120.00520 * 22 20 18 25 25 H 1.48501 * 109.47099 * 240.00173 * 22 20 18 26 26 C 1.47897 * 105.81961 * 320.79405 * 13 12 11 27 27 C 1.36546 * 108.02774 * 359.60244 * 5 4 3 28 28 H 1.09002 * 109.47197 * 269.99681 * 1 2 3 29 29 H 1.09000 * 109.47468 * 30.00085 * 1 2 3 30 30 H 1.08997 * 109.46938 * 149.99972 * 1 2 3 31 31 H 1.08000 * 125.61244 * 359.96504 * 3 2 1 32 32 H 0.97008 * 119.99560 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.47331 * 297.90968 * 10 9 8 34 34 H 1.09004 * 109.47080 * 57.91152 * 10 9 8 35 35 H 1.09002 * 109.47493 * 177.91060 * 10 9 8 36 36 H 1.09003 * 110.72520 * 215.31765 * 11 9 8 37 37 H 1.08997 * 110.72559 * 338.41704 * 11 9 8 38 38 H 1.09002 * 110.66774 * 278.97766 * 12 11 9 39 39 H 1.09000 * 110.66999 * 155.84946 * 12 11 9 40 40 H 1.08998 * 109.46809 * 167.39713 * 14 13 12 41 41 H 1.09002 * 109.47056 * 47.39454 * 14 13 12 42 42 H 0.97000 * 119.99339 * 0.02562 * 17 15 14 43 43 H 0.97000 * 119.99610 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.91642 * 144.68166 * 26 13 12 45 45 H 1.09002 * 109.91860 * 265.77683 * 26 13 12 46 46 H 1.07995 * 126.64771 * 180.26384 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 0.0053 5 6 3.6260 -0.6681 -0.0001 6 6 4.8379 -1.4940 0.0004 7 8 4.7472 -2.7076 0.0008 8 7 6.0521 -0.9092 0.0004 9 6 7.2627 -1.7342 0.0003 10 6 7.2714 -2.6628 1.2162 11 6 7.3517 -2.5562 -1.3060 12 6 8.2895 -1.6983 -2.1920 13 7 9.2827 -1.1690 -1.2226 14 6 9.9565 0.0221 -1.7566 15 6 10.9141 -0.3882 -2.8454 16 8 11.0248 -1.5579 -3.1466 17 7 11.6483 0.5446 -3.4838 18 6 12.5236 0.1706 -4.4705 19 1 12.6246 -0.8712 -4.7365 20 6 13.2801 1.1323 -5.1290 21 7 13.1569 2.4000 -4.8057 22 14 14.4723 0.6229 -6.4740 23 1 14.4244 -0.8513 -6.6457 24 1 14.0919 1.2830 -7.7486 25 1 15.8489 1.0322 -6.0962 26 6 8.5177 -0.8419 0.0002 27 6 2.3408 -1.1292 -0.0001 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.9770 2.1145 -0.0005 32 1 6.1245 0.0582 0.0004 33 1 7.2842 -2.0667 2.1286 34 1 6.3783 -3.2875 1.2027 35 1 8.1581 -3.2960 1.1835 36 1 7.7901 -3.5359 -1.1162 37 1 6.3686 -2.6577 -1.7656 38 1 7.7373 -0.8836 -2.6605 39 1 8.7786 -2.3160 -2.9452 40 1 10.5066 0.5176 -0.9566 41 1 9.2136 0.7072 -2.1652 42 1 11.5605 1.4798 -3.2421 43 1 13.6854 3.0712 -5.2652 44 1 9.1219 -1.0507 0.8831 45 1 8.2296 0.2093 -0.0122 46 1 2.0267 -2.1625 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270616402.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:51 Heat of formation + Delta-G solvation = -70.456731 kcal Electronic energy + Delta-G solvation = -28591.904647 eV Core-core repulsion = 24482.395679 eV Total energy + Delta-G solvation = -4109.508967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.71211 -41.55446 -40.23486 -39.03913 -36.13521 -35.63936 -35.09261 -33.33460 -32.93063 -31.38460 -30.69197 -28.92841 -28.15818 -26.92728 -25.62043 -24.60840 -22.80397 -22.14469 -21.30289 -21.06181 -20.41671 -19.87236 -19.02671 -17.92074 -17.42654 -17.41181 -17.22960 -16.67274 -16.24914 -16.17420 -15.91359 -15.59371 -15.56713 -14.92388 -14.70450 -14.46128 -14.21944 -14.18571 -14.04984 -13.95772 -13.65638 -13.52985 -13.42850 -13.25549 -12.98352 -12.94095 -12.56277 -12.47511 -12.42992 -12.38639 -12.11811 -12.04595 -11.95412 -11.48635 -11.17272 -10.74040 -10.32828 -10.27808 -9.99643 -9.56194 -9.36726 -8.46291 -5.94354 0.00109 1.32702 1.36277 1.41441 1.55471 1.61768 2.05937 2.06868 2.10364 2.29228 2.81597 3.20188 3.26645 3.45230 3.65158 3.67522 3.81127 3.87785 4.04512 4.18947 4.25901 4.27562 4.33975 4.41909 4.48993 4.55045 4.64042 4.71077 4.78149 4.82449 4.87369 4.90866 4.92372 5.01558 5.05728 5.08095 5.08238 5.28911 5.38319 5.42027 5.50010 5.78526 5.84167 5.91037 6.07740 6.39299 6.61962 6.96932 7.14389 7.57840 8.14416 8.71404 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018702 B = 0.002166 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.783748 B =12925.776767 C =13753.522031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.208 4.208 3 C 0.004 3.996 4 O -0.168 6.168 5 C -0.103 4.103 6 C 0.604 3.396 7 O -0.545 6.545 8 N -0.700 5.700 9 C 0.171 3.829 10 C -0.150 4.150 11 C -0.114 4.114 12 C 0.044 3.956 13 N -0.508 5.508 14 C 0.049 3.951 15 C 0.441 3.559 16 O -0.616 6.616 17 N -0.575 5.575 18 C -0.330 4.330 19 H 0.077 0.923 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.270 1.270 26 C 0.039 3.961 27 C -0.125 4.125 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.250 0.750 32 H 0.413 0.587 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.041 0.959 39 H 0.061 0.939 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.108 0.892 45 H 0.074 0.926 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.254 2.278 14.203 28.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.209 4.209 3 C -0.065 4.065 4 O -0.064 6.064 5 C -0.155 4.155 6 C 0.391 3.609 7 O -0.425 6.425 8 N -0.352 5.352 9 C 0.085 3.915 10 C -0.208 4.208 11 C -0.153 4.153 12 C -0.084 4.084 13 N -0.233 5.233 14 C -0.083 4.083 15 C 0.229 3.771 16 O -0.502 6.502 17 N -0.213 5.213 18 C -0.460 4.460 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.089 4.089 27 C -0.146 4.146 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.266 0.734 32 H 0.251 0.749 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.127 0.873 45 H 0.092 0.908 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -23.420 0.615 14.045 27.315 hybrid contribution 0.072 1.135 -1.030 1.535 sum -23.348 1.750 13.014 26.788 Atomic orbital electron populations 1.20257 0.86674 1.03808 1.03169 1.20855 0.99159 0.91785 1.09107 1.25095 0.78789 1.01681 1.00926 1.84052 1.30715 1.20843 1.70746 1.21879 0.95865 0.81312 1.16455 1.16692 0.81732 0.86256 0.76183 1.90841 1.86420 1.13438 1.51814 1.46077 1.04396 1.10839 1.73863 1.21127 0.83140 0.91093 0.96161 1.22123 1.03399 0.99445 0.95874 1.22766 0.98796 0.98993 0.94713 1.23147 0.91927 0.97924 0.95379 1.64456 1.26427 1.27752 1.04627 1.21960 0.96969 0.92311 0.97021 1.20779 0.84735 0.85871 0.85740 1.90493 1.70762 1.19788 1.69125 1.41921 1.36776 1.09223 1.33393 1.19669 1.18070 0.94604 1.13655 0.90502 1.26012 0.99769 0.94764 1.00799 1.69671 1.42334 1.00727 1.43417 0.84892 0.77797 0.78143 0.77630 1.19971 1.19617 1.19557 1.23278 0.92562 0.98496 0.94523 1.22087 0.90919 1.01344 1.00211 0.90384 0.89575 0.91406 0.73384 0.74944 0.90868 0.91696 0.90729 0.90235 0.91161 0.94070 0.92006 0.86592 0.91017 0.76994 0.91344 0.87343 0.90783 0.82587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.39 71.23 0.74 0.11 16 2 C -0.21 -2.79 6.14 -20.06 -0.12 -2.92 16 3 C 0.00 0.05 12.00 67.10 0.81 0.85 16 4 O -0.17 -2.83 10.40 -5.01 -0.05 -2.88 16 5 C -0.10 -2.16 7.13 24.07 0.17 -1.98 16 6 C 0.60 14.47 6.97 86.44 0.60 15.07 16 7 O -0.55 -16.11 13.74 -4.33 -0.06 -16.17 16 8 N -0.70 -14.25 5.14 -422.89 -2.18 -16.43 16 9 C 0.17 3.88 0.94 4.48 0.00 3.89 16 10 C -0.15 -3.22 8.15 71.98 0.59 -2.63 16 11 C -0.11 -3.22 5.85 31.80 0.19 -3.03 16 12 C 0.04 1.46 5.93 86.65 0.51 1.97 16 13 N -0.51 -16.31 4.91 -887.57 -4.35 -20.66 16 14 C 0.05 1.65 5.19 85.55 0.44 2.10 16 15 C 0.44 21.15 7.61 87.65 0.67 21.82 16 16 O -0.62 -34.65 14.64 -3.08 -0.05 -34.70 16 17 N -0.58 -29.60 5.29 -306.97 -1.62 -31.22 16 18 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 19 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 20 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 21 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 22 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 C 0.04 0.87 6.12 86.45 0.53 1.40 16 27 C -0.12 -2.37 10.57 22.39 0.24 -2.13 16 28 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.25 0.42 8.06 -2.91 -0.02 0.40 16 32 H 0.41 6.67 7.85 -92.70 -0.73 5.95 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.62 6.03 -2.38 -0.01 1.61 16 35 H 0.07 1.58 8.11 -2.39 -0.02 1.56 16 36 H 0.08 2.34 7.85 -2.39 -0.02 2.32 16 37 H 0.07 2.08 6.81 -2.39 -0.02 2.06 16 38 H 0.04 1.31 7.81 -2.39 -0.02 1.29 16 39 H 0.06 2.52 7.10 -2.39 -0.02 2.51 16 40 H 0.12 3.34 8.08 -2.39 -0.02 3.32 16 41 H 0.07 2.14 7.83 -2.39 -0.02 2.12 16 42 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 43 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 44 H 0.11 2.16 7.68 -2.38 -0.02 2.14 16 45 H 0.07 1.31 7.10 -2.39 -0.02 1.29 16 46 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -74.46 380.54 0.21 -74.25 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: -0.43 Total: 35.68 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 6.65 Total: 16.13 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -7.87 Total: -117.68 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -0.16 Total: -53.75 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -74.46 0.21 -74.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270616402.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.794 kcal (2) G-P(sol) polarization free energy of solvation -74.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds