Wall clock time and date at job start Tue Mar 31 2020 19:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34863 * 119.09579 * 2 1 4 4 C 1.41672 * 119.33390 * 179.78210 * 3 2 1 5 5 O 1.22085 * 121.06779 * 180.21365 * 4 3 2 6 6 C 1.47099 * 117.86740 * 0.41952 * 4 3 2 7 7 C 1.47283 * 120.88546 * 179.81630 * 6 4 3 8 8 O 1.21619 * 119.99848 * 359.72431 * 7 6 4 9 9 N 1.34775 * 120.00434 * 179.71785 * 7 6 4 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.46924 * 179.97438 * 10 9 7 12 12 O 1.42897 * 110.63976 * 66.69043 * 11 10 9 13 13 C 1.55151 * 110.71715 * 190.02223 * 11 10 9 14 14 C 1.54908 * 101.57948 * 153.86684 * 13 11 10 15 15 N 1.47425 * 104.83295 * 322.99031 * 14 13 11 16 16 C 1.36934 * 125.64753 * 204.16512 * 15 14 13 17 17 H 1.08001 * 120.00199 * 179.97438 * 16 15 14 18 18 C 1.38815 * 120.00412 * 359.95636 * 16 15 14 19 19 N 1.31618 * 119.99596 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00163 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47350 * 59.99957 * 20 18 16 22 22 H 1.48503 * 109.47168 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47342 * 300.00057 * 20 18 16 24 24 C 1.47017 * 108.70199 * 24.13050 * 15 14 13 25 25 C 1.37995 * 118.23152 * 359.54371 * 6 4 3 26 26 N 1.34343 * 120.37367 * 0.27503 * 25 6 4 27 27 C 1.46498 * 118.80527 * 179.97438 * 26 25 6 28 28 H 1.09004 * 109.47076 * 264.09363 * 1 2 3 29 29 H 1.08998 * 109.47533 * 24.09301 * 1 2 3 30 30 H 1.09003 * 109.47346 * 144.09876 * 1 2 3 31 31 H 1.07996 * 120.33077 * 359.97438 * 3 2 1 32 32 H 0.97004 * 119.99502 * 0.02562 * 9 7 6 33 33 H 1.09008 * 109.46989 * 60.00183 * 10 9 7 34 34 H 1.08992 * 109.46939 * 299.99872 * 10 9 7 35 35 H 0.96702 * 113.99746 * 300.69780 * 12 11 10 36 36 H 1.08995 * 111.01011 * 271.94173 * 13 11 10 37 37 H 1.09002 * 111.00913 * 35.79445 * 13 11 10 38 38 H 1.09005 * 110.37107 * 204.15122 * 14 13 11 39 39 H 1.08999 * 110.37012 * 81.83194 * 14 13 11 40 40 H 0.97008 * 119.99725 * 179.97438 * 19 18 16 41 41 H 1.09009 * 109.88078 * 239.52217 * 24 15 14 42 42 H 1.08996 * 109.88617 * 118.35876 * 24 15 14 43 43 H 1.08001 * 119.81158 * 180.25067 * 25 6 4 44 44 H 1.09003 * 109.46879 * 95.97225 * 27 26 25 45 45 H 1.09002 * 109.46906 * 215.96745 * 27 26 25 46 46 H 1.08995 * 109.47463 * 335.96840 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1784 0.0000 4 6 3.5795 1.1843 0.0047 5 8 4.2052 2.2327 0.0087 6 6 4.2725 -0.1132 -0.0001 7 6 5.7436 -0.1846 0.0003 8 8 6.4020 0.8380 -0.0004 9 7 6.3602 -1.3830 0.0016 10 6 7.8235 -1.4540 0.0025 11 6 8.2630 -2.9196 0.0046 12 8 7.9015 -3.5555 -1.2230 13 6 9.7893 -3.0346 0.2582 14 6 9.8948 -4.4473 0.8849 15 7 8.6893 -4.5792 1.7232 16 6 8.5555 -5.4103 2.8033 17 1 7.6273 -5.4337 3.3549 18 6 9.6127 -6.2230 3.1891 19 7 10.7439 -6.1944 2.5170 20 14 9.4298 -7.3571 4.6621 21 1 8.3160 -8.3087 4.4189 22 1 10.6915 -8.1138 4.8639 23 1 9.1362 -6.5509 5.8742 24 6 7.6550 -3.6703 1.2080 25 6 3.5077 -1.2617 0.0008 26 7 2.1664 -1.1847 0.0003 27 6 1.3881 -2.4258 0.0007 28 1 -0.3633 -0.1058 1.0222 29 1 -0.3634 0.9381 -0.4195 30 1 -0.3634 -0.8324 -0.6026 31 1 1.6135 2.1083 -0.0004 32 1 5.8350 -2.1986 0.0019 33 1 8.2107 -0.9577 0.8925 34 1 8.2118 -0.9591 -0.8875 35 1 6.9522 -3.5445 -1.4070 36 1 10.3461 -2.9795 -0.6772 37 1 10.1278 -2.2704 0.9579 38 1 10.7932 -4.5245 1.4974 39 1 9.8999 -5.2088 0.1051 40 1 11.4829 -6.7620 2.7868 41 1 7.3679 -2.9587 1.9823 42 1 6.7849 -4.2428 0.8868 43 1 3.9900 -2.2281 0.0014 44 1 1.1042 -2.6763 1.0229 45 1 0.4906 -2.2920 -0.6032 46 1 1.9903 -3.2325 -0.4172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271159186.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:54 Heat of formation + Delta-G solvation = -43.992344 kcal Electronic energy + Delta-G solvation = -29213.380559 eV Core-core repulsion = 25105.019174 eV Total energy + Delta-G solvation = -4108.361385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.53504 -39.65266 -38.48493 -37.72424 -35.11785 -34.26829 -33.69936 -32.87802 -32.05756 -29.74207 -28.93093 -27.72994 -27.27540 -25.70498 -24.55666 -23.57497 -21.93761 -20.96529 -20.10507 -19.90206 -18.60741 -17.89227 -16.95641 -16.78356 -16.47490 -16.36393 -15.76660 -15.35114 -15.14146 -14.76630 -14.69336 -14.26070 -13.97739 -13.93121 -13.87243 -13.58366 -13.56482 -13.33313 -13.13622 -12.91188 -12.82380 -12.37506 -12.26381 -12.16211 -12.08509 -11.59124 -11.07090 -10.89705 -10.78122 -10.35929 -10.20516 -10.12885 -9.88246 -9.83091 -9.74073 -9.46109 -9.23539 -8.98340 -8.68089 -8.21169 -6.89353 -5.69329 -3.12056 0.57492 1.01552 1.96967 2.95866 3.14400 3.36548 3.40615 3.42723 3.67225 3.74303 4.02688 4.13308 4.33361 4.42320 4.44426 4.47257 4.66553 4.74932 4.78071 4.84304 4.87693 5.08157 5.19329 5.20545 5.37850 5.39783 5.46027 5.47873 5.64519 5.91949 5.99376 6.10737 6.21477 6.23675 6.35857 6.42252 6.43269 6.49217 6.58801 6.64424 7.52551 7.53335 7.58043 7.82003 7.91852 8.02055 8.31657 8.39337 9.16692 9.77294 10.41889 11.34221 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.002802 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.588950 B = 9990.593802 C =11118.033147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 C -0.268 4.268 4 C 0.408 3.592 5 O -0.480 6.480 6 C -0.297 4.297 7 C 0.572 3.428 8 O -0.510 6.510 9 N -0.733 5.733 10 C 0.107 3.893 11 C 0.105 3.895 12 O -0.542 6.542 13 C -0.128 4.128 14 C 0.156 3.844 15 N -0.599 5.599 16 C -0.228 4.228 17 H 0.076 0.924 18 C -0.009 4.009 19 N -0.920 5.920 20 Si 0.916 3.084 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.285 1.285 24 C 0.117 3.883 25 C 0.175 3.825 26 N -0.471 5.471 27 C 0.046 3.954 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.152 0.848 32 H 0.389 0.611 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.362 0.638 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.018 0.982 40 H 0.254 0.746 41 H 0.031 0.969 42 H 0.020 0.980 43 H 0.167 0.833 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.661 6.449 -7.578 25.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 C -0.292 4.292 4 C 0.293 3.707 5 O -0.360 6.360 6 C -0.308 4.308 7 C 0.359 3.641 8 O -0.385 6.385 9 N -0.387 5.387 10 C -0.017 4.017 11 C 0.064 3.936 12 O -0.346 6.346 13 C -0.167 4.167 14 C 0.031 3.969 15 N -0.325 5.325 16 C -0.356 4.356 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.568 5.568 20 Si 0.746 3.254 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.211 1.211 24 C -0.010 4.010 25 C 0.044 3.956 26 N -0.158 5.158 27 C -0.095 4.095 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.170 0.830 32 H 0.224 0.776 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.208 0.792 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.036 0.964 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.037 0.963 43 H 0.184 0.816 44 H 0.103 0.897 45 H 0.112 0.888 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.161 7.357 -7.482 24.520 hybrid contribution -1.112 -1.216 0.808 1.835 sum -23.272 6.140 -6.674 24.977 Atomic orbital electron populations 1.21193 0.88019 1.05049 1.04174 1.20276 0.94890 0.84971 0.95013 1.22287 0.96305 0.97207 1.13422 1.18145 0.88238 0.87875 0.76419 1.90829 1.69926 1.33208 1.42067 1.22545 0.94306 0.95178 1.18776 1.17462 0.86126 0.83506 0.77026 1.90858 1.65861 1.33855 1.47909 1.45931 1.07901 1.07665 1.77173 1.22065 0.79006 0.97315 1.03301 1.22575 0.98213 0.88479 0.84376 1.86639 1.27621 1.80477 1.39911 1.23056 0.90663 1.02194 1.00808 1.21945 0.93090 0.88827 0.92998 1.44399 1.10050 1.45855 1.32236 1.18990 0.98717 1.14656 1.03211 0.90640 1.24801 0.96125 1.00052 0.99490 1.69786 1.03755 1.42249 1.40973 0.86143 0.76810 0.80338 0.82103 1.21253 1.21487 1.21114 1.21909 0.92797 0.92815 0.93465 1.22243 0.82224 0.99932 0.91213 1.42562 1.05273 1.07306 1.60616 1.22586 0.97873 0.84285 1.04721 0.89272 0.88868 0.90083 0.83020 0.77638 0.90236 0.90621 0.79208 0.91014 0.90489 0.87429 0.96380 0.93541 0.95078 0.96262 0.81586 0.89743 0.88756 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.25 9.34 36.01 0.34 0.09 16 2 C 0.15 0.94 6.64 -82.13 -0.54 0.39 16 3 C -0.27 -2.65 9.57 -39.47 -0.38 -3.02 16 4 C 0.41 6.12 6.96 -34.68 -0.24 5.88 16 5 O -0.48 -9.66 16.41 -15.18 -0.25 -9.91 16 6 C -0.30 -3.85 6.05 -102.72 -0.62 -4.47 16 7 C 0.57 9.16 7.77 -12.58 -0.10 9.06 16 8 O -0.51 -10.80 15.57 -14.76 -0.23 -11.03 16 9 N -0.73 -9.67 5.08 -61.43 -0.31 -9.98 16 10 C 0.11 1.65 4.80 -4.04 -0.02 1.64 16 11 C 0.11 1.79 0.93 -88.79 -0.08 1.71 16 12 O -0.54 -8.78 13.10 -35.23 -0.46 -9.24 16 13 C -0.13 -2.48 6.26 -24.59 -0.15 -2.64 16 14 C 0.16 3.81 5.88 -2.53 -0.01 3.80 16 15 N -0.60 -15.05 3.39 -170.07 -0.58 -15.63 16 16 C -0.23 -6.22 10.27 -15.06 -0.15 -6.37 16 17 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 18 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 19 N -0.92 -26.61 10.09 55.49 0.56 -26.05 16 20 Si 0.92 21.68 29.55 -169.99 -5.02 16.65 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.12 2.28 5.76 -3.07 -0.02 2.27 16 25 C 0.17 1.32 9.80 -16.54 -0.16 1.15 16 26 N -0.47 -2.47 2.97 -119.75 -0.36 -2.83 16 27 C 0.05 0.05 9.98 59.85 0.60 0.64 16 28 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.09 0.14 7.97 -51.93 -0.41 -0.27 16 30 H 0.08 0.01 6.00 -51.93 -0.31 -0.31 16 31 H 0.15 1.28 8.01 -52.49 -0.42 0.85 16 32 H 0.39 3.84 5.55 -40.82 -0.23 3.62 16 33 H 0.08 1.34 8.03 -51.92 -0.42 0.92 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.36 4.16 8.44 45.56 0.38 4.55 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.43 7.96 -51.93 -0.41 1.02 16 38 H 0.11 2.93 5.87 -51.93 -0.30 2.63 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.03 0.61 7.82 -51.92 -0.41 0.21 16 42 H 0.02 0.35 8.07 -51.93 -0.42 -0.06 16 43 H 0.17 0.71 6.28 -52.49 -0.33 0.38 16 44 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 45 H 0.09 -0.07 5.94 -51.93 -0.31 -0.38 16 46 H 0.10 -0.02 7.86 -51.93 -0.41 -0.43 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -41.20 373.66 -8.32 -49.52 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.65 Total: 3.09 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -1.65 Total: 9.78 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.69 Total: -54.49 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.94 Total: -30.18 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -41.20 -8.32 -49.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271159186.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.530 kcal (2) G-P(sol) polarization free energy of solvation -41.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds