Wall clock time and date at job start Tue Mar 31 2020 19:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34863 * 119.09579 * 2 1 4 4 C 1.41672 * 119.33390 * 179.78210 * 3 2 1 5 5 O 1.22085 * 121.06779 * 180.21365 * 4 3 2 6 6 C 1.47099 * 117.86740 * 0.41952 * 4 3 2 7 7 C 1.47283 * 120.88546 * 179.81630 * 6 4 3 8 8 O 1.21619 * 119.99848 * 359.72431 * 7 6 4 9 9 N 1.34775 * 120.00434 * 179.71785 * 7 6 4 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.46924 * 179.97438 * 10 9 7 12 12 O 1.42897 * 110.63976 * 66.69043 * 11 10 9 13 13 C 1.55151 * 110.71715 * 190.02223 * 11 10 9 14 14 C 1.54908 * 101.57948 * 153.86684 * 13 11 10 15 15 N 1.47425 * 104.83295 * 322.99031 * 14 13 11 16 16 C 1.36934 * 125.64753 * 204.16512 * 15 14 13 17 17 H 1.08001 * 120.00199 * 179.97438 * 16 15 14 18 18 C 1.38815 * 120.00412 * 359.95636 * 16 15 14 19 19 N 1.31618 * 119.99596 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00163 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47350 * 59.99957 * 20 18 16 22 22 H 1.48503 * 109.47168 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47342 * 300.00057 * 20 18 16 24 24 C 1.47017 * 108.70199 * 24.13050 * 15 14 13 25 25 C 1.37995 * 118.23152 * 359.54371 * 6 4 3 26 26 N 1.34343 * 120.37367 * 0.27503 * 25 6 4 27 27 C 1.46498 * 118.80527 * 179.97438 * 26 25 6 28 28 H 1.09004 * 109.47076 * 264.09363 * 1 2 3 29 29 H 1.08998 * 109.47533 * 24.09301 * 1 2 3 30 30 H 1.09003 * 109.47346 * 144.09876 * 1 2 3 31 31 H 1.07996 * 120.33077 * 359.97438 * 3 2 1 32 32 H 0.97004 * 119.99502 * 0.02562 * 9 7 6 33 33 H 1.09008 * 109.46989 * 60.00183 * 10 9 7 34 34 H 1.08992 * 109.46939 * 299.99872 * 10 9 7 35 35 H 0.96702 * 113.99746 * 300.69780 * 12 11 10 36 36 H 1.08995 * 111.01011 * 271.94173 * 13 11 10 37 37 H 1.09002 * 111.00913 * 35.79445 * 13 11 10 38 38 H 1.09005 * 110.37107 * 204.15122 * 14 13 11 39 39 H 1.08999 * 110.37012 * 81.83194 * 14 13 11 40 40 H 0.97008 * 119.99725 * 179.97438 * 19 18 16 41 41 H 1.09009 * 109.88078 * 239.52217 * 24 15 14 42 42 H 1.08996 * 109.88617 * 118.35876 * 24 15 14 43 43 H 1.08001 * 119.81158 * 180.25067 * 25 6 4 44 44 H 1.09003 * 109.46879 * 95.97225 * 27 26 25 45 45 H 1.09002 * 109.46906 * 215.96745 * 27 26 25 46 46 H 1.08995 * 109.47463 * 335.96840 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1784 0.0000 4 6 3.5795 1.1843 0.0047 5 8 4.2052 2.2327 0.0087 6 6 4.2725 -0.1132 -0.0001 7 6 5.7436 -0.1846 0.0003 8 8 6.4020 0.8380 -0.0004 9 7 6.3602 -1.3830 0.0016 10 6 7.8235 -1.4540 0.0025 11 6 8.2630 -2.9196 0.0046 12 8 7.9015 -3.5555 -1.2230 13 6 9.7893 -3.0346 0.2582 14 6 9.8948 -4.4473 0.8849 15 7 8.6893 -4.5792 1.7232 16 6 8.5555 -5.4103 2.8033 17 1 7.6273 -5.4337 3.3549 18 6 9.6127 -6.2230 3.1891 19 7 10.7439 -6.1944 2.5170 20 14 9.4298 -7.3571 4.6621 21 1 8.3160 -8.3087 4.4189 22 1 10.6915 -8.1138 4.8639 23 1 9.1362 -6.5509 5.8742 24 6 7.6550 -3.6703 1.2080 25 6 3.5077 -1.2617 0.0008 26 7 2.1664 -1.1847 0.0003 27 6 1.3881 -2.4258 0.0007 28 1 -0.3633 -0.1058 1.0222 29 1 -0.3634 0.9381 -0.4195 30 1 -0.3634 -0.8324 -0.6026 31 1 1.6135 2.1083 -0.0004 32 1 5.8350 -2.1986 0.0019 33 1 8.2107 -0.9577 0.8925 34 1 8.2118 -0.9591 -0.8875 35 1 6.9522 -3.5445 -1.4070 36 1 10.3461 -2.9795 -0.6772 37 1 10.1278 -2.2704 0.9579 38 1 10.7932 -4.5245 1.4974 39 1 9.8999 -5.2088 0.1051 40 1 11.4829 -6.7620 2.7868 41 1 7.3679 -2.9587 1.9823 42 1 6.7849 -4.2428 0.8868 43 1 3.9900 -2.2281 0.0014 44 1 1.1042 -2.6763 1.0229 45 1 0.4906 -2.2920 -0.6032 46 1 1.9903 -3.2325 -0.4172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271159186.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:54 Heat of formation + Delta-G solvation = -77.040119 kcal Electronic energy + Delta-G solvation = -29214.813618 eV Core-core repulsion = 25105.019174 eV Total energy + Delta-G solvation = -4109.794444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.24936 -40.90415 -39.79075 -38.83725 -36.78530 -35.46341 -34.37428 -33.97158 -33.55402 -31.38630 -30.06929 -28.81783 -27.68630 -27.35466 -25.52537 -24.97458 -22.92374 -22.25246 -21.57120 -21.33578 -19.58073 -18.86810 -18.63908 -17.81151 -17.23575 -17.03460 -16.80862 -16.72665 -16.53774 -16.28892 -15.71014 -15.59483 -15.50625 -14.96973 -14.79431 -14.66014 -14.40330 -14.20937 -13.87893 -13.84402 -13.82977 -13.62901 -13.32937 -13.27281 -12.93087 -12.71164 -12.67464 -12.51433 -12.37238 -12.09010 -12.04200 -11.78466 -11.61236 -11.20742 -10.92641 -10.71713 -10.52235 -10.33539 -10.19428 -9.06538 -8.89418 -7.75959 -5.21060 -0.22431 0.32435 1.46204 1.48277 1.51741 1.58096 1.86425 2.02423 2.50445 2.77535 3.16643 3.20683 3.34204 3.43503 3.58663 3.61800 3.70352 3.79467 3.93521 3.95904 4.18326 4.23808 4.43040 4.47392 4.47665 4.60989 4.68695 4.72809 4.74281 4.80436 4.83455 4.87595 4.94624 4.99042 5.09283 5.16180 5.29075 5.30219 5.47688 5.61848 5.69840 5.79517 5.80627 6.30005 6.49471 6.82622 7.08693 7.10056 7.27082 7.77869 8.42009 9.26194 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.002802 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.588950 B = 9990.593802 C =11118.033147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.187 3.813 3 C -0.303 4.303 4 C 0.382 3.618 5 O -0.568 6.568 6 C -0.352 4.352 7 C 0.571 3.429 8 O -0.577 6.577 9 N -0.713 5.713 10 C 0.120 3.880 11 C 0.129 3.871 12 O -0.551 6.551 13 C -0.124 4.124 14 C 0.161 3.839 15 N -0.622 5.622 16 C -0.239 4.239 17 H 0.087 0.913 18 C -0.069 4.069 19 N -0.951 5.951 20 Si 0.982 3.018 21 H -0.274 1.274 22 H -0.297 1.297 23 H -0.277 1.277 24 C 0.114 3.886 25 C 0.222 3.778 26 N -0.455 5.455 27 C 0.030 3.970 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.155 0.845 32 H 0.409 0.591 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.386 0.614 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.073 0.927 39 H -0.012 1.012 40 H 0.247 0.753 41 H 0.035 0.965 42 H 0.047 0.953 43 H 0.210 0.790 44 H 0.103 0.897 45 H 0.122 0.878 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.387 3.639 -7.736 29.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.079 3.921 3 C -0.326 4.326 4 C 0.275 3.725 5 O -0.457 6.457 6 C -0.363 4.363 7 C 0.361 3.639 8 O -0.457 6.457 9 N -0.368 5.368 10 C -0.005 4.005 11 C 0.087 3.913 12 O -0.358 6.358 13 C -0.163 4.163 14 C 0.036 3.964 15 N -0.348 5.348 16 C -0.368 4.368 17 H 0.105 0.895 18 C -0.262 4.262 19 N -0.601 5.601 20 Si 0.810 3.190 21 H -0.200 1.200 22 H -0.224 1.224 23 H -0.203 1.203 24 C -0.012 4.012 25 C 0.087 3.913 26 N -0.137 5.137 27 C -0.108 4.108 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.132 0.868 31 H 0.172 0.828 32 H 0.246 0.754 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.235 0.765 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.006 0.994 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.227 0.773 44 H 0.121 0.879 45 H 0.140 0.860 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -27.024 4.470 -7.656 28.441 hybrid contribution 0.106 -0.538 0.819 0.986 sum -26.918 3.932 -6.837 28.050 Atomic orbital electron populations 1.21408 0.83973 1.06879 1.06027 1.20842 0.97057 0.83919 0.90286 1.22152 0.94044 0.99456 1.16951 1.18959 0.90372 0.87836 0.75312 1.90771 1.71715 1.35617 1.47589 1.22130 0.92959 0.96378 1.24839 1.17951 0.87430 0.82987 0.75579 1.90818 1.67461 1.36144 1.51229 1.45622 1.06917 1.07868 1.76398 1.21753 0.80411 0.95781 1.02537 1.22139 0.96184 0.88858 0.84128 1.86609 1.30061 1.80270 1.38900 1.22918 0.93144 0.99051 1.01161 1.21630 0.92110 0.90883 0.91753 1.44676 1.11655 1.46405 1.32101 1.19447 0.98998 1.14536 1.03784 0.89507 1.25679 0.96028 1.02070 1.02386 1.70055 1.04377 1.43056 1.42573 0.85101 0.76502 0.78437 0.78965 1.19979 1.22386 1.20343 1.22118 0.92434 0.92354 0.94258 1.22662 0.83020 0.99563 0.86051 1.43201 1.04989 1.09042 1.56513 1.23153 0.98692 0.82158 1.06839 0.87290 0.88321 0.86811 0.82767 0.75363 0.91820 0.90884 0.76455 0.89702 0.90037 0.90892 0.99375 0.94366 0.94696 0.93479 0.77315 0.87868 0.85992 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.19 9.34 71.24 0.67 0.86 16 2 C 0.19 1.59 6.64 41.20 0.27 1.87 16 3 C -0.30 -5.99 9.57 22.34 0.21 -5.77 16 4 C 0.38 12.35 6.96 25.45 0.18 12.53 16 5 O -0.57 -25.78 16.41 13.55 0.22 -25.55 16 6 C -0.35 -9.11 6.05 -18.63 -0.11 -9.22 16 7 C 0.57 18.77 7.77 86.62 0.67 19.44 16 8 O -0.58 -26.35 15.57 15.05 0.23 -26.12 16 9 N -0.71 -17.77 5.08 -466.51 -2.37 -20.14 16 10 C 0.12 3.63 4.80 86.38 0.41 4.04 16 11 C 0.13 4.18 0.93 -9.61 -0.01 4.17 16 12 O -0.55 -16.31 13.10 -148.98 -1.95 -18.26 16 13 C -0.12 -4.78 6.26 31.98 0.20 -4.58 16 14 C 0.16 8.05 5.88 86.85 0.51 8.56 16 15 N -0.62 -30.96 3.39 -691.99 -2.35 -33.31 16 16 C -0.24 -12.91 10.27 84.03 0.86 -12.04 16 17 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 18 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 19 N -0.95 -56.55 10.09 21.65 0.22 -56.33 16 20 Si 0.98 44.47 29.55 68.60 2.03 46.50 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 C 0.11 4.19 5.76 86.73 0.50 4.69 16 25 C 0.22 2.47 9.80 84.25 0.83 3.30 16 26 N -0.45 -2.41 2.97 -532.77 -1.58 -3.99 16 27 C 0.03 -0.16 9.98 127.77 1.28 1.11 16 28 H 0.11 -0.41 8.14 -2.38 -0.02 -0.42 16 29 H 0.10 -0.12 7.97 -2.39 -0.02 -0.14 16 30 H 0.11 -0.82 6.00 -2.39 -0.01 -0.84 16 31 H 0.15 2.77 8.01 -2.91 -0.02 2.74 16 32 H 0.41 6.53 5.55 -92.71 -0.51 6.01 16 33 H 0.06 2.17 8.03 -2.38 -0.02 2.15 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.39 7.23 8.44 -74.06 -0.62 6.60 16 36 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.08 3.06 7.96 -2.39 -0.02 3.04 16 38 H 0.07 4.16 5.87 -2.38 -0.01 4.14 16 39 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 41 H 0.04 1.29 7.82 -2.38 -0.02 1.27 16 42 H 0.05 1.50 8.07 -2.39 -0.02 1.48 16 43 H 0.21 0.46 6.28 -2.91 -0.02 0.44 16 44 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 45 H 0.12 -1.19 5.94 -2.39 -0.01 -1.21 16 46 H 0.12 -1.01 7.86 -2.39 -0.02 -1.03 16 Total: -1.00 -102.40 373.66 1.28 -101.13 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -0.11 Total: 10.51 kcal Atomic # 6 Polarization: 18.63 SS G_CDS: 6.94 Total: 25.57 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -6.08 Total: -113.77 kcal Atomic # 8 Polarization: -68.44 SS G_CDS: -1.50 Total: -69.93 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -102.40 1.28 -101.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271159186.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.088 kcal (2) G-P(sol) polarization free energy of solvation -102.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds