Wall clock time and date at job start Tue Mar 31 2020 19:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30176 * 126.80005 * 2 1 4 4 O 1.20925 * 111.60398 * 179.97438 * 3 2 1 5 5 C 1.34039 * 111.56665 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.77688 * 179.97438 * 5 4 3 7 7 C 1.35453 * 106.44623 * 0.02562 * 5 4 3 8 8 C 1.50698 * 128.00622 * 179.97438 * 7 5 4 9 9 N 1.46498 * 109.47423 * 78.68155 * 8 7 5 10 10 C 1.34275 * 119.37979 * 56.05854 * 9 8 7 11 11 O 1.21285 * 118.96823 * 1.95600 * 10 9 8 12 12 C 1.50268 * 122.07404 * 181.71944 * 10 9 8 13 13 O 1.42826 * 110.55739 * 342.09815 * 12 10 9 14 14 C 1.43387 * 113.32920 * 51.08677 * 13 12 10 15 15 C 1.45923 * 119.38628 * 236.32897 * 9 8 7 16 16 C 1.53479 * 113.80363 * 32.92164 * 15 9 8 17 17 N 1.48043 * 86.05116 * 268.89397 * 16 15 9 18 18 C 1.46900 * 110.99569 * 222.70793 * 17 16 15 19 19 C 1.50706 * 109.46870 * 269.44103 * 18 17 16 20 20 H 1.07993 * 120.00383 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99633 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99805 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00355 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47054 * 89.99866 * 23 21 19 25 25 H 1.48500 * 109.47080 * 210.00250 * 23 21 19 26 26 H 1.48509 * 109.46908 * 330.00081 * 23 21 19 27 27 C 1.48038 * 90.83494 * 335.62992 * 17 16 15 28 28 H 1.08995 * 109.46893 * 91.75342 * 1 2 3 29 29 H 1.09001 * 109.46939 * 211.74699 * 1 2 3 30 30 H 1.08994 * 109.47650 * 331.75109 * 1 2 3 31 31 H 1.09007 * 109.46987 * 354.57449 * 6 5 4 32 32 H 1.08994 * 109.47556 * 114.57492 * 6 5 4 33 33 H 1.09003 * 109.47269 * 234.58129 * 6 5 4 34 34 H 1.08997 * 109.47268 * 198.68732 * 8 7 5 35 35 H 1.09006 * 109.47378 * 318.68677 * 8 7 5 36 36 H 1.08996 * 109.41185 * 221.71053 * 12 10 9 37 37 H 1.08994 * 109.06623 * 102.27228 * 12 10 9 38 38 H 1.09008 * 109.70371 * 174.66832 * 14 13 12 39 39 H 1.08997 * 109.70860 * 54.05053 * 14 13 12 40 40 H 1.08996 * 113.77437 * 23.18076 * 16 15 9 41 41 H 1.08996 * 113.77516 * 154.60739 * 16 15 9 42 42 H 1.08994 * 109.47842 * 29.44075 * 18 17 16 43 43 H 1.09004 * 109.47064 * 149.44608 * 18 17 16 44 44 H 0.96998 * 120.00158 * 179.97438 * 22 21 19 45 45 H 1.09002 * 113.78369 * 270.08151 * 27 17 16 46 46 H 1.09002 * 113.78104 * 138.65111 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6025 -0.6067 0.0015 6 6 4.9022 -1.3695 0.0018 7 6 2.3539 -1.1320 0.0010 8 6 1.9591 -2.5863 0.0011 9 7 2.0920 -3.1284 1.3556 10 6 1.4357 -2.5394 2.3682 11 8 0.7178 -1.5912 2.1303 12 6 1.5584 -3.0213 3.7862 13 8 2.0806 -4.3503 3.8208 14 6 3.2816 -4.5087 3.0537 15 6 2.9399 -4.2946 1.5801 16 6 4.1601 -4.3613 0.6516 17 7 3.2961 -5.1460 -0.2590 18 6 4.0255 -6.2910 -0.8201 19 6 4.6851 -5.8821 -2.1120 20 1 4.5740 -4.8727 -2.4792 21 6 5.4305 -6.7970 -2.8251 22 7 6.0066 -6.4401 -3.9522 23 14 5.6222 -8.5434 -2.1904 24 1 4.5267 -9.3889 -2.7292 25 1 6.9312 -9.0892 -2.6306 26 1 5.5610 -8.5402 -0.7065 27 6 2.4432 -5.5649 0.8762 28 1 -0.3633 -0.0314 -1.0271 29 1 -0.3633 -0.8739 0.5407 30 1 -0.3634 0.9052 0.4864 31 1 5.7333 -0.6710 -0.0961 32 1 4.9995 -1.9212 0.9367 33 1 4.9140 -2.0677 -0.8352 34 1 0.9246 -2.6820 -0.3287 35 1 2.6092 -3.1394 -0.6769 36 1 0.5767 -3.0081 4.2596 37 1 2.2290 -2.3570 4.3312 38 1 3.6791 -5.5136 3.1965 39 1 4.0200 -3.7723 3.3706 40 1 4.4591 -3.3936 0.2487 41 1 4.9949 -4.9287 1.0630 42 1 4.7861 -6.6198 -0.1120 43 1 3.3290 -7.1076 -1.0104 44 1 6.5313 -7.0836 -4.4537 45 1 2.7699 -6.4886 1.3540 46 1 1.3766 -5.5547 0.6518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:37 Heat of formation + Delta-G solvation = 48.308535 kcal Electronic energy + Delta-G solvation = -31284.384513 eV Core-core repulsion = 27180.025594 eV Total energy + Delta-G solvation = -4104.358919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.69334 -41.42357 -39.00846 -37.69537 -35.52255 -34.15172 -33.31357 -32.72454 -30.65391 -29.16122 -28.48202 -28.26377 -27.44906 -26.27184 -25.16166 -24.32798 -21.79818 -21.44371 -20.54349 -19.80984 -18.66872 -17.67166 -17.42150 -16.96968 -16.88783 -16.65075 -16.01114 -15.68840 -15.26801 -14.78549 -14.46294 -14.38617 -14.07568 -13.96342 -13.70176 -13.27033 -13.24770 -12.99733 -12.94129 -12.73204 -12.60832 -12.50319 -12.28229 -12.15322 -12.01408 -11.83464 -11.60857 -11.28409 -10.90431 -10.68913 -10.58856 -10.41251 -10.39626 -10.02392 -9.71614 -9.50280 -9.38015 -8.89928 -8.74970 -8.68154 -8.15620 -6.17161 -4.15984 1.59234 2.29724 2.42428 2.95349 3.18061 3.24685 3.27101 3.29247 3.47806 4.12074 4.18939 4.30010 4.39412 4.44728 4.58067 4.67704 4.82763 5.01536 5.04121 5.12899 5.16587 5.19239 5.37733 5.37848 5.41299 5.49990 5.56408 5.58798 5.69056 5.70211 5.82582 5.90030 5.92176 5.94776 5.97993 6.00202 6.14567 6.23470 6.35938 6.48449 6.57396 6.61365 7.11560 7.36269 7.50348 7.62321 8.04105 8.46882 8.50582 8.91098 9.43518 10.95758 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.004429 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.724577 B = 6320.416639 C = 7707.322060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.061 3.939 3 N -0.383 5.383 4 O 0.086 5.914 5 C -0.021 4.021 6 C -0.083 4.083 7 C -0.209 4.209 8 C 0.187 3.813 9 N -0.566 5.566 10 C 0.485 3.515 11 O -0.529 6.529 12 C 0.049 3.951 13 O -0.367 6.367 14 C 0.062 3.938 15 C 0.099 3.901 16 C -0.009 4.009 17 N -0.460 5.460 18 C 0.129 3.871 19 C -0.510 4.510 20 H 0.080 0.920 21 C 0.070 3.930 22 N -0.896 5.896 23 Si 0.874 3.126 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.269 1.269 27 C -0.003 4.003 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.002 0.998 43 H 0.025 0.975 44 H 0.265 0.735 45 H 0.075 0.925 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.357 5.988 14.767 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 N -0.092 5.092 4 O 0.025 5.975 5 C -0.085 4.085 6 C -0.140 4.140 7 C -0.213 4.213 8 C 0.065 3.935 9 N -0.298 5.298 10 C 0.272 3.728 11 O -0.407 6.407 12 C -0.030 4.030 13 O -0.285 6.285 14 C -0.016 4.016 15 C 0.011 3.989 16 C -0.139 4.139 17 N -0.182 5.182 18 C 0.002 3.998 19 C -0.548 4.548 20 H 0.098 0.902 21 C -0.132 4.132 22 N -0.535 5.535 23 Si 0.701 3.299 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.194 1.194 27 C -0.133 4.133 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.101 0.899 38 H 0.135 0.865 39 H 0.083 0.917 40 H 0.124 0.876 41 H 0.100 0.900 42 H 0.019 0.981 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.196 7.872 13.996 17.212 hybrid contribution 0.709 -2.150 0.628 2.349 sum -5.488 5.722 14.624 16.635 Atomic orbital electron populations 1.20239 0.86218 1.04529 1.02111 1.23318 0.98794 0.87998 0.99738 1.73790 0.89271 1.24121 1.21972 1.84773 1.21836 1.22423 1.68447 1.24272 0.98188 0.83894 1.02140 1.20647 0.90113 0.98829 1.04381 1.21127 0.91651 0.97805 1.10755 1.19875 1.03449 0.86697 0.83469 1.47320 1.45908 1.28421 1.08107 1.21115 0.80001 0.83527 0.88113 1.90694 1.38331 1.27748 1.83893 1.22751 1.02299 0.84969 0.93013 1.88160 1.41681 1.27825 1.70851 1.23069 0.87009 1.03877 0.87596 1.22528 0.93466 0.87369 0.95507 1.24719 0.94267 1.02327 0.92555 1.68526 1.12855 1.18525 1.18294 1.20721 0.92919 0.89505 0.96654 1.20893 1.29915 0.99972 1.04032 0.90189 1.24909 0.95251 0.98335 0.94702 1.69881 1.33575 1.35252 1.14789 0.86894 0.77861 0.85620 0.79510 1.20166 1.21150 1.19364 1.24345 1.00978 0.95168 0.92818 0.91238 0.88323 0.91471 0.89837 0.89305 0.87641 0.90452 0.84870 0.85420 0.89851 0.86452 0.91652 0.87640 0.90022 0.98058 0.95717 0.92544 0.90649 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 9.74 36.00 0.35 -0.65 16 2 C 0.06 0.97 6.40 -82.10 -0.53 0.44 16 3 N -0.38 -6.45 12.07 33.42 0.40 -6.05 16 4 O 0.09 1.37 11.20 17.18 0.19 1.56 16 5 C -0.02 -0.29 7.49 -35.30 -0.26 -0.56 16 6 C -0.08 -0.94 8.60 36.00 0.31 -0.63 16 7 C -0.21 -3.14 4.77 -104.42 -0.50 -3.64 16 8 C 0.19 2.69 5.16 -5.20 -0.03 2.66 16 9 N -0.57 -7.36 2.86 -163.49 -0.47 -7.82 16 10 C 0.48 6.33 7.32 -11.42 -0.08 6.25 16 11 O -0.53 -8.10 12.19 5.55 0.07 -8.03 16 12 C 0.05 0.50 6.93 35.80 0.25 0.74 16 13 O -0.37 -3.93 10.84 -35.23 -0.38 -4.31 16 14 C 0.06 0.60 6.09 37.04 0.23 0.83 16 15 C 0.10 1.19 1.56 -135.17 -0.21 0.98 16 16 C -0.01 -0.13 6.41 -2.95 -0.02 -0.15 16 17 N -0.46 -7.84 4.42 -241.82 -1.07 -8.91 16 18 C 0.13 2.70 3.62 -4.97 -0.02 2.68 16 19 C -0.51 -13.14 9.92 -34.44 -0.34 -13.48 16 20 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 21 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 22 N -0.90 -25.95 13.96 55.43 0.77 -25.18 16 23 Si 0.87 19.94 27.47 -169.99 -4.67 15.27 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.27 -5.77 6.54 56.52 0.37 -5.40 16 27 C 0.00 -0.04 7.14 -2.95 -0.02 -0.06 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.38 5.80 -51.93 -0.30 1.08 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.90 6.87 -51.93 -0.36 0.54 16 33 H 0.11 1.31 7.16 -51.93 -0.37 0.94 16 34 H 0.08 1.13 7.93 -51.93 -0.41 0.72 16 35 H 0.13 2.10 5.19 -51.93 -0.27 1.83 16 36 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.12 0.98 7.86 -51.92 -0.41 0.57 16 39 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 40 H 0.11 1.42 2.49 -51.93 -0.13 1.29 16 41 H 0.08 1.07 7.42 -51.93 -0.39 0.69 16 42 H 0.00 0.04 6.44 -51.93 -0.33 -0.30 16 43 H 0.02 0.53 7.51 -51.93 -0.39 0.14 16 44 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.08 0.97 7.68 -51.93 -0.40 0.57 16 46 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 358.05 15.07 5.40 5.40 Total: -1.00 -31.32 358.05 -7.03 -38.35 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.31 Total: 2.51 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.97 Total: -2.78 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.36 Total: -47.96 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.12 Total: -10.79 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.67 Total: 15.27 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.32 -7.03 -38.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.661 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds