Wall clock time and date at job start Tue Mar 31 2020 19:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30176 * 126.80005 * 2 1 4 4 O 1.20925 * 111.60398 * 179.97438 * 3 2 1 5 5 C 1.34039 * 111.56665 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.77688 * 179.97438 * 5 4 3 7 7 C 1.35453 * 106.44623 * 0.02562 * 5 4 3 8 8 C 1.50698 * 128.00622 * 179.97438 * 7 5 4 9 9 N 1.46498 * 109.47423 * 78.68155 * 8 7 5 10 10 C 1.34275 * 119.37979 * 56.05854 * 9 8 7 11 11 O 1.21285 * 118.96823 * 1.95600 * 10 9 8 12 12 C 1.50268 * 122.07404 * 181.71944 * 10 9 8 13 13 O 1.42826 * 110.55739 * 342.09815 * 12 10 9 14 14 C 1.43387 * 113.32920 * 51.08677 * 13 12 10 15 15 C 1.45923 * 119.38628 * 236.32897 * 9 8 7 16 16 C 1.53479 * 113.80363 * 32.92164 * 15 9 8 17 17 N 1.48043 * 86.05116 * 268.89397 * 16 15 9 18 18 C 1.46900 * 110.99569 * 222.70793 * 17 16 15 19 19 C 1.50706 * 109.46870 * 269.44103 * 18 17 16 20 20 H 1.07993 * 120.00383 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99633 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99805 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00355 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47054 * 89.99866 * 23 21 19 25 25 H 1.48500 * 109.47080 * 210.00250 * 23 21 19 26 26 H 1.48509 * 109.46908 * 330.00081 * 23 21 19 27 27 C 1.48038 * 90.83494 * 335.62992 * 17 16 15 28 28 H 1.08995 * 109.46893 * 91.75342 * 1 2 3 29 29 H 1.09001 * 109.46939 * 211.74699 * 1 2 3 30 30 H 1.08994 * 109.47650 * 331.75109 * 1 2 3 31 31 H 1.09007 * 109.46987 * 354.57449 * 6 5 4 32 32 H 1.08994 * 109.47556 * 114.57492 * 6 5 4 33 33 H 1.09003 * 109.47269 * 234.58129 * 6 5 4 34 34 H 1.08997 * 109.47268 * 198.68732 * 8 7 5 35 35 H 1.09006 * 109.47378 * 318.68677 * 8 7 5 36 36 H 1.08996 * 109.41185 * 221.71053 * 12 10 9 37 37 H 1.08994 * 109.06623 * 102.27228 * 12 10 9 38 38 H 1.09008 * 109.70371 * 174.66832 * 14 13 12 39 39 H 1.08997 * 109.70860 * 54.05053 * 14 13 12 40 40 H 1.08996 * 113.77437 * 23.18076 * 16 15 9 41 41 H 1.08996 * 113.77516 * 154.60739 * 16 15 9 42 42 H 1.08994 * 109.47842 * 29.44075 * 18 17 16 43 43 H 1.09004 * 109.47064 * 149.44608 * 18 17 16 44 44 H 0.96998 * 120.00158 * 179.97438 * 22 21 19 45 45 H 1.09002 * 113.78369 * 270.08151 * 27 17 16 46 46 H 1.09002 * 113.78104 * 138.65111 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6025 -0.6067 0.0015 6 6 4.9022 -1.3695 0.0018 7 6 2.3539 -1.1320 0.0010 8 6 1.9591 -2.5863 0.0011 9 7 2.0920 -3.1284 1.3556 10 6 1.4357 -2.5394 2.3682 11 8 0.7178 -1.5912 2.1303 12 6 1.5584 -3.0213 3.7862 13 8 2.0806 -4.3503 3.8208 14 6 3.2816 -4.5087 3.0537 15 6 2.9399 -4.2946 1.5801 16 6 4.1601 -4.3613 0.6516 17 7 3.2961 -5.1460 -0.2590 18 6 4.0255 -6.2910 -0.8201 19 6 4.6851 -5.8821 -2.1120 20 1 4.5740 -4.8727 -2.4792 21 6 5.4305 -6.7970 -2.8251 22 7 6.0066 -6.4401 -3.9522 23 14 5.6222 -8.5434 -2.1904 24 1 4.5267 -9.3889 -2.7292 25 1 6.9312 -9.0892 -2.6306 26 1 5.5610 -8.5402 -0.7065 27 6 2.4432 -5.5649 0.8762 28 1 -0.3633 -0.0314 -1.0271 29 1 -0.3633 -0.8739 0.5407 30 1 -0.3634 0.9052 0.4864 31 1 5.7333 -0.6710 -0.0961 32 1 4.9995 -1.9212 0.9367 33 1 4.9140 -2.0677 -0.8352 34 1 0.9246 -2.6820 -0.3287 35 1 2.6092 -3.1394 -0.6769 36 1 0.5767 -3.0081 4.2596 37 1 2.2290 -2.3570 4.3312 38 1 3.6791 -5.5136 3.1965 39 1 4.0200 -3.7723 3.3706 40 1 4.4591 -3.3936 0.2487 41 1 4.9949 -4.9287 1.0630 42 1 4.7861 -6.6198 -0.1120 43 1 3.3290 -7.1076 -1.0104 44 1 6.5313 -7.0836 -4.4537 45 1 2.7699 -6.4886 1.3540 46 1 1.3766 -5.5547 0.6518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:37 Heat of formation + Delta-G solvation = 25.806666 kcal Electronic energy + Delta-G solvation = -31285.360267 eV Core-core repulsion = 27180.025594 eV Total energy + Delta-G solvation = -4105.334673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.90224 -42.45686 -40.12058 -38.56978 -36.69781 -35.40669 -34.74224 -34.23320 -31.97990 -30.12646 -29.70757 -29.53599 -28.49507 -27.36515 -26.32012 -25.61281 -23.04976 -22.71754 -21.82752 -20.95483 -19.64396 -18.87998 -18.62908 -18.61752 -18.01145 -17.71043 -17.01514 -16.77177 -16.51933 -16.00672 -15.67997 -15.52097 -15.28229 -15.05757 -14.86090 -14.56641 -14.32336 -14.26307 -14.07278 -13.96856 -13.84549 -13.76375 -13.40140 -13.23383 -13.13674 -13.02739 -12.82407 -12.68409 -12.23991 -11.91956 -11.88479 -11.69885 -11.60654 -11.46925 -11.36214 -10.86977 -10.72385 -10.48692 -9.99562 -9.82244 -9.44741 -8.22404 -6.25451 0.43512 1.12727 1.40185 1.40909 1.43706 1.50319 1.92152 2.17635 2.38876 2.67310 3.05860 3.12667 3.19510 3.30318 3.45618 3.56620 3.63080 3.86056 4.06246 4.07879 4.21078 4.36177 4.41530 4.42722 4.51842 4.52080 4.56746 4.60756 4.63944 4.67225 4.70234 4.75122 4.81169 4.83491 4.84497 4.88071 4.90614 4.96435 5.18261 5.26477 5.41091 5.55601 5.75973 5.80337 6.01571 6.39143 6.59178 6.82410 7.03731 7.31037 7.38331 8.94043 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.004429 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.724577 B = 6320.416639 C = 7707.322060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.051 3.949 3 N -0.406 5.406 4 O 0.079 5.921 5 C -0.017 4.017 6 C -0.079 4.079 7 C -0.221 4.221 8 C 0.196 3.804 9 N -0.566 5.566 10 C 0.478 3.522 11 O -0.556 6.556 12 C 0.055 3.945 13 O -0.371 6.371 14 C 0.064 3.936 15 C 0.113 3.887 16 C -0.012 4.012 17 N -0.486 5.486 18 C 0.139 3.861 19 C -0.508 4.508 20 H 0.037 0.963 21 C 0.008 3.992 22 N -0.950 5.950 23 Si 0.943 3.057 24 H -0.275 1.275 25 H -0.289 1.289 26 H -0.239 1.239 27 C -0.001 4.001 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.118 0.882 36 H 0.142 0.858 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.015 0.985 43 H 0.022 0.978 44 H 0.264 0.736 45 H 0.094 0.906 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.140 4.635 17.887 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.108 4.108 3 N -0.117 5.117 4 O 0.019 5.981 5 C -0.082 4.082 6 C -0.135 4.135 7 C -0.225 4.225 8 C 0.074 3.926 9 N -0.297 5.297 10 C 0.268 3.732 11 O -0.435 6.435 12 C -0.024 4.024 13 O -0.289 6.289 14 C -0.013 4.013 15 C 0.026 3.974 16 C -0.141 4.141 17 N -0.209 5.209 18 C 0.011 3.989 19 C -0.546 4.546 20 H 0.055 0.945 21 C -0.190 4.190 22 N -0.591 5.591 23 Si 0.767 3.233 24 H -0.201 1.201 25 H -0.215 1.215 26 H -0.162 1.162 27 C -0.131 4.131 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.135 0.865 36 H 0.160 0.840 37 H 0.123 0.877 38 H 0.156 0.844 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.033 0.967 43 H 0.040 0.960 44 H 0.073 0.927 45 H 0.112 0.888 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.985 6.519 17.157 19.305 hybrid contribution 0.589 -1.627 -0.401 1.776 sum -5.397 4.892 16.755 18.270 Atomic orbital electron populations 1.20251 0.85062 1.04429 1.02901 1.23718 0.99780 0.88109 0.99227 1.73772 0.89736 1.24843 1.23312 1.84736 1.21554 1.23137 1.68661 1.24745 0.99107 0.83435 1.00879 1.20725 0.89387 0.98761 1.04646 1.21248 0.91962 0.97919 1.11396 1.19608 1.02365 0.86309 0.84331 1.47368 1.46187 1.28663 1.07513 1.21791 0.79217 0.83053 0.89179 1.90687 1.39365 1.28975 1.84433 1.22826 1.03740 0.85122 0.90699 1.88173 1.42116 1.28013 1.70592 1.23216 0.87120 1.05876 0.85114 1.22440 0.91876 0.85961 0.97168 1.24806 0.95076 1.01949 0.92231 1.68442 1.13967 1.17620 1.20846 1.20492 0.93010 0.90733 0.94665 1.21194 1.29439 0.98068 1.05919 0.94468 1.25832 0.95120 1.03165 0.94835 1.70057 1.35347 1.36946 1.16790 0.85782 0.77378 0.79574 0.80556 1.20059 1.21483 1.16194 1.24413 1.00075 0.96915 0.91732 0.89925 0.88772 0.91125 0.87851 0.87497 0.89001 0.91413 0.86450 0.83994 0.87734 0.84371 0.89507 0.87777 0.88557 0.96696 0.96018 0.92719 0.88763 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.88 9.74 71.24 0.69 -1.19 16 2 C 0.05 1.62 6.40 43.58 0.28 1.90 16 3 N -0.41 -13.79 12.07 -49.55 -0.60 -14.39 16 4 O 0.08 2.49 11.20 71.64 0.80 3.29 16 5 C -0.02 -0.49 7.49 25.04 0.19 -0.30 16 6 C -0.08 -1.71 8.60 71.24 0.61 -1.10 16 7 C -0.22 -6.65 4.77 -19.74 -0.09 -6.75 16 8 C 0.20 5.68 5.16 85.63 0.44 6.12 16 9 N -0.57 -13.86 2.86 -789.84 -2.26 -16.11 16 10 C 0.48 11.58 7.32 87.60 0.64 12.22 16 11 O -0.56 -16.46 12.19 -3.04 -0.04 -16.50 16 12 C 0.06 0.93 6.93 71.10 0.49 1.42 16 13 O -0.37 -6.42 10.84 -148.98 -1.62 -8.03 16 14 C 0.06 0.96 6.09 71.91 0.44 1.40 16 15 C 0.11 2.42 1.56 5.16 0.01 2.43 16 16 C -0.01 -0.30 6.41 86.24 0.55 0.25 16 17 N -0.49 -16.06 4.42 -918.99 -4.07 -20.12 16 18 C 0.14 5.60 3.62 85.56 0.31 5.91 16 19 C -0.51 -26.54 9.92 25.60 0.25 -26.29 16 20 H 0.04 2.20 8.06 -2.91 -0.02 2.18 16 21 C 0.01 0.41 5.47 84.66 0.46 0.87 16 22 N -0.95 -56.67 13.96 21.45 0.30 -56.37 16 23 Si 0.94 40.49 27.47 68.60 1.88 42.37 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 25 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 26 H -0.24 -9.01 6.54 99.48 0.65 -8.36 16 27 C 0.00 -0.04 7.14 86.25 0.62 0.58 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.09 2.66 5.80 -2.39 -0.01 2.64 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.10 1.82 8.14 -2.38 -0.02 1.81 16 32 H 0.11 1.94 6.87 -2.39 -0.02 1.92 16 33 H 0.09 2.31 7.16 -2.39 -0.02 2.30 16 34 H 0.07 2.04 7.93 -2.39 -0.02 2.03 16 35 H 0.12 3.79 5.19 -2.38 -0.01 3.78 16 36 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.14 1.57 7.86 -2.38 -0.02 1.55 16 39 H 0.09 1.00 8.13 -2.39 -0.02 0.98 16 40 H 0.10 2.67 2.49 -2.39 -0.01 2.67 16 41 H 0.10 2.20 7.42 -2.39 -0.02 2.18 16 42 H 0.02 0.58 6.44 -2.39 -0.02 0.56 16 43 H 0.02 0.89 7.51 -2.38 -0.02 0.88 16 44 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 45 H 0.09 2.07 7.68 -2.39 -0.02 2.05 16 46 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -69.95 358.05 1.27 -68.68 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.96 Total: 19.71 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 5.89 Total: -2.52 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -6.62 Total: -107.00 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.85 Total: -21.24 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 1.88 Total: 42.37 kcal Total: -69.95 1.27 -68.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.486 kcal (2) G-P(sol) polarization free energy of solvation -69.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds