Wall clock time and date at job start Tue Mar 31 2020 19:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35135 * 126.44119 * 2 1 4 4 O 1.33936 * 108.76765 * 179.74683 * 3 2 1 5 5 C 1.34916 * 109.38336 * 0.37885 * 4 3 2 6 6 C 1.46655 * 125.98603 * 179.88326 * 5 4 3 7 7 O 1.21703 * 119.99810 * 179.69284 * 6 5 4 8 8 N 1.34777 * 120.00110 * 359.42139 * 6 5 4 9 9 C 1.46504 * 119.99854 * 180.27595 * 8 6 5 10 10 C 1.53782 * 113.61084 * 254.13569 * 9 8 6 11 11 C 1.54054 * 86.98083 * 270.83768 * 10 9 8 12 12 C 1.52999 * 113.61714 * 220.01926 * 11 10 9 13 13 N 1.46899 * 109.47533 * 272.49486 * 12 11 10 14 14 C 1.46904 * 111.00119 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47047 * 180.02562 * 14 13 12 16 16 O 1.21292 * 119.99970 * 0.02562 * 15 14 13 17 17 N 1.34771 * 120.00045 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00251 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00184 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00541 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99719 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00333 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47220 * 89.99890 * 22 20 18 24 24 H 1.48503 * 109.46782 * 209.99935 * 22 20 18 25 25 H 1.48502 * 109.47135 * 329.99446 * 22 20 18 26 26 C 1.53776 * 113.61107 * 156.52513 * 9 8 6 27 27 C 1.36542 * 108.02307 * 359.62620 * 5 4 3 28 28 H 1.08995 * 109.47446 * 270.02248 * 1 2 3 29 29 H 1.08997 * 109.46966 * 30.02924 * 1 2 3 30 30 H 1.09002 * 109.46877 * 150.02704 * 1 2 3 31 31 H 1.07995 * 125.61658 * 359.94600 * 3 2 1 32 32 H 0.96990 * 119.99728 * 0.26873 * 8 6 5 33 33 H 1.08995 * 112.84849 * 25.32788 * 9 8 6 34 34 H 1.09004 * 113.61536 * 25.42834 * 10 9 8 35 35 H 1.09002 * 113.61372 * 156.33788 * 10 9 8 36 36 H 1.08998 * 113.69067 * 89.12817 * 11 10 9 37 37 H 1.08998 * 109.47196 * 32.49850 * 12 11 10 38 38 H 1.09006 * 109.46809 * 152.49449 * 12 11 10 39 39 H 1.00899 * 110.99711 * 56.04680 * 13 12 11 40 40 H 1.08995 * 109.47207 * 300.00809 * 14 13 12 41 41 H 1.09004 * 109.46581 * 60.00330 * 14 13 12 42 42 H 0.97006 * 120.00346 * 359.97438 * 17 15 14 43 43 H 0.96996 * 120.00182 * 180.02562 * 21 20 18 44 44 H 1.09001 * 113.61202 * 203.65633 * 26 9 8 45 45 H 1.08989 * 113.61854 * 334.48253 * 26 9 8 46 46 H 1.08005 * 126.64448 * 180.24938 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 0.0056 5 6 3.6261 -0.6680 0.0009 6 6 4.8380 -1.4940 0.0022 7 8 4.7472 -2.7076 0.0031 8 7 6.0522 -0.9090 -0.0032 9 6 7.2627 -1.7341 -0.0081 10 6 7.9944 -1.7622 1.3443 11 6 8.7717 -0.5246 0.8571 12 6 10.2536 -0.5427 1.2374 13 7 10.4244 0.0502 2.5706 14 6 11.8380 0.0492 2.9701 15 6 11.9734 0.6630 4.3397 16 8 10.9890 1.0615 4.9256 17 7 13.1882 0.7690 4.9136 18 6 13.3114 1.3278 6.1594 19 1 12.4350 1.6827 6.6812 20 6 14.5638 1.4367 6.7513 21 7 15.6303 1.0044 6.1167 22 14 14.7316 2.1974 8.4491 23 1 14.6106 1.1365 9.4811 24 1 16.0579 2.8548 8.5680 25 1 13.6598 3.2059 8.6478 26 6 8.4972 -1.0133 -0.5749 27 6 2.3409 -1.1291 0.0005 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8903 -0.5134 31 1 1.9770 2.1145 -0.0008 32 1 6.1244 0.0582 -0.0040 33 1 7.0993 -2.7229 -0.4367 34 1 7.3445 -1.5638 2.1966 35 1 8.6201 -2.6438 1.4839 36 1 8.2848 0.4207 1.0967 37 1 10.6133 -1.5716 1.2486 38 1 10.8230 0.0333 0.5079 39 1 9.8555 -0.4267 3.2539 40 1 12.2083 -0.9756 2.9933 41 1 12.4187 0.6291 2.2526 42 1 13.9755 0.4499 4.4452 43 1 16.5045 1.0800 6.5300 44 1 9.2601 -1.6905 -0.9588 45 1 8.2530 -0.2118 -1.2719 46 1 2.0267 -2.1624 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275274953.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:45 Heat of formation + Delta-G solvation = -40.736291 kcal Electronic energy + Delta-G solvation = -27088.528415 eV Core-core repulsion = 22980.308223 eV Total energy + Delta-G solvation = -4108.220192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.10533 -40.45190 -38.71900 -38.12378 -35.28626 -34.69154 -33.87302 -33.29255 -31.21377 -30.93162 -28.63091 -27.68923 -26.02573 -25.67599 -24.31769 -23.41086 -21.96575 -21.53864 -20.47428 -19.56339 -19.09933 -18.31939 -17.87164 -16.85170 -16.75530 -16.38840 -16.12731 -15.55107 -15.28629 -14.89650 -14.58104 -14.42197 -14.16916 -13.98105 -13.88629 -13.64418 -13.59657 -13.45382 -13.10892 -12.99232 -12.95324 -12.65344 -12.30906 -12.15820 -11.73848 -11.55542 -11.49511 -11.07697 -10.98893 -10.67108 -10.60982 -10.38643 -10.29830 -10.20072 -10.13594 -9.49935 -9.44584 -8.97844 -8.44369 -8.03295 -7.94439 -6.40751 -3.81517 0.66726 1.88300 2.27351 2.80371 2.81924 3.18557 3.27037 3.33194 3.92448 4.06820 4.20413 4.25012 4.27503 4.33279 4.51695 4.53313 4.63637 4.82107 4.87269 5.14800 5.15732 5.19285 5.26343 5.31542 5.36692 5.44387 5.47278 5.49397 5.51378 5.54780 5.59283 5.70260 5.80118 5.86529 5.96610 5.97676 6.00127 6.02494 6.27183 6.33562 6.44541 7.09987 7.25979 7.56168 7.70198 7.71777 8.07657 8.62635 9.19044 9.55685 10.07343 10.77042 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018441 B = 0.001646 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.999139 B =17005.314820 C =18057.431836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.195 4.195 3 C -0.006 4.006 4 O -0.161 6.161 5 C -0.078 4.078 6 C 0.607 3.393 7 O -0.520 6.520 8 N -0.699 5.699 9 C 0.118 3.882 10 C -0.150 4.150 11 C -0.106 4.106 12 C 0.068 3.932 13 N -0.669 5.669 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.138 4.138 27 C -0.116 4.116 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.210 0.790 32 H 0.408 0.592 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.028 0.972 38 H 0.071 0.929 39 H 0.349 0.651 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.097 0.903 45 H 0.075 0.925 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.124 -3.660 -18.156 29.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.197 4.197 3 C -0.076 4.076 4 O -0.057 6.057 5 C -0.130 4.130 6 C 0.393 3.607 7 O -0.397 6.397 8 N -0.350 5.350 9 C 0.013 3.987 10 C -0.189 4.189 11 C -0.125 4.125 12 C -0.061 4.061 13 N -0.301 5.301 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.177 4.177 27 C -0.137 4.137 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.227 0.773 32 H 0.243 0.757 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.168 0.832 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.116 0.884 45 H 0.093 0.907 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -23.328 -3.438 -17.927 29.621 hybrid contribution 0.776 -0.266 0.807 1.151 sum -22.552 -3.704 -17.120 28.555 Atomic orbital electron populations 1.20192 0.88512 1.02911 1.02487 1.20514 0.97822 0.92367 1.08953 1.24252 0.79831 1.00154 1.03356 1.84069 1.29436 1.21585 1.70561 1.22007 0.96078 0.80655 1.14232 1.16522 0.81240 0.86365 0.76577 1.90892 1.85974 1.12270 1.50609 1.45570 1.04735 1.10669 1.73976 1.21907 0.83204 0.95538 0.98027 1.23585 0.99061 0.98864 0.97351 1.22689 0.95916 0.98815 0.95066 1.21947 0.95182 0.96982 0.91999 1.60092 1.07294 1.59377 1.03326 1.21672 0.90239 0.99340 0.97007 1.19833 0.84356 0.85532 0.87659 1.90520 1.37559 1.53519 1.65162 1.41865 1.06952 1.54044 1.17234 1.19711 0.94586 1.35770 0.92860 0.87936 1.25259 0.94855 0.97774 1.00054 1.69613 0.98868 1.47084 1.38787 0.85853 0.77610 0.79174 0.81624 1.20439 1.20923 1.19421 1.23332 0.96713 1.00584 0.97028 1.21862 0.90528 1.00646 1.00637 0.91133 0.91373 0.91243 0.77322 0.75685 0.87793 0.90748 0.88999 0.88172 0.95348 0.91015 0.83208 0.93970 0.89658 0.77465 0.91895 0.88432 0.90673 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.39 36.00 0.37 -0.01 16 2 C -0.20 -1.40 6.14 -104.93 -0.64 -2.05 16 3 C -0.01 -0.04 12.00 29.63 0.36 0.32 16 4 O -0.16 -1.42 10.40 4.98 0.05 -1.37 16 5 C -0.08 -0.79 7.13 -36.80 -0.26 -1.05 16 6 C 0.61 6.86 7.79 -12.86 -0.10 6.76 16 7 O -0.52 -7.38 16.48 5.19 0.09 -7.29 16 8 N -0.70 -6.48 5.26 -54.33 -0.29 -6.76 16 9 C 0.12 1.07 4.30 -67.12 -0.29 0.78 16 10 C -0.15 -1.48 7.45 -25.77 -0.19 -1.67 16 11 C -0.11 -1.04 3.79 -89.66 -0.34 -1.38 16 12 C 0.07 0.80 5.52 -3.82 -0.02 0.78 16 13 N -0.67 -10.78 6.13 -115.06 -0.70 -11.48 16 14 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 15 C 0.44 10.55 7.82 -10.99 -0.09 10.46 16 16 O -0.58 -16.07 15.78 5.55 0.09 -15.99 16 17 N -0.56 -14.46 5.29 -10.97 -0.06 -14.52 16 18 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 22 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C -0.14 -1.05 7.38 -25.92 -0.19 -1.24 16 27 C -0.12 -1.07 10.57 -39.39 -0.42 -1.48 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.21 0.55 8.06 -52.49 -0.42 0.13 16 32 H 0.41 3.18 8.46 -40.82 -0.35 2.83 16 33 H 0.10 1.02 7.50 -51.93 -0.39 0.63 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.86 7.90 -51.93 -0.41 0.45 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.03 0.31 7.85 -51.93 -0.41 -0.09 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.35 5.90 8.43 -39.29 -0.33 5.57 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.10 0.66 8.10 -51.93 -0.42 0.23 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 LS Contribution 395.87 15.07 5.97 5.97 Total: -1.00 -34.15 395.87 -8.03 -42.17 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -6.79 Total: 14.06 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -2.08 Total: 2.99 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.32 Total: -56.71 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: 0.22 Total: -24.64 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.15 -8.03 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275274953.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.438 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds