Wall clock time and date at job start Tue Mar 31 2020 19:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35129 * 126.43940 * 2 1 4 4 O 1.33929 * 108.76678 * 180.02562 * 3 2 1 5 5 C 1.34909 * 109.38468 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98840 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99639 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 H 1.08999 * 109.47480 * 35.27807 * 9 8 6 11 11 C 1.52999 * 109.47493 * 155.28120 * 9 8 6 12 12 N 1.46909 * 109.46509 * 305.00232 * 11 9 8 13 13 C 1.46896 * 110.99741 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.47056 * 180.02562 * 13 12 11 15 15 O 1.21293 * 119.99964 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99908 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99723 * 179.97438 * 16 14 13 18 18 H 1.08007 * 120.00134 * 0.02562 * 17 16 14 19 19 C 1.38952 * 120.00194 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99341 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00285 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46832 * 60.00726 * 21 19 17 23 23 H 1.48503 * 109.47115 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47265 * 300.00535 * 21 19 17 25 25 C 1.53008 * 109.47014 * 275.27733 * 9 8 6 26 26 C 1.53007 * 117.49696 * 128.74932 * 25 9 8 27 27 C 1.52998 * 117.50017 * 60.09194 * 25 9 8 28 28 C 1.36549 * 108.02412 * 0.22292 * 5 4 3 29 29 H 1.08999 * 109.47086 * 89.97980 * 1 2 3 30 30 H 1.09002 * 109.46978 * 209.97112 * 1 2 3 31 31 H 1.08995 * 109.47714 * 329.97469 * 1 2 3 32 32 H 1.08005 * 125.61727 * 0.02562 * 3 2 1 33 33 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.47318 * 64.99083 * 11 9 8 35 35 H 1.08988 * 109.47710 * 185.00333 * 11 9 8 36 36 H 1.00898 * 111.00059 * 56.04358 * 12 11 9 37 37 H 1.09003 * 109.47432 * 299.99509 * 13 12 11 38 38 H 1.08997 * 109.47699 * 59.99569 * 13 12 11 39 39 H 0.96998 * 120.00034 * 359.97438 * 16 14 13 40 40 H 0.97004 * 119.99286 * 179.97438 * 20 19 17 41 41 H 1.08992 * 115.54981 * 274.41455 * 25 9 8 42 42 H 1.08999 * 117.49485 * 0.02562 * 26 25 9 43 43 H 1.09001 * 117.49917 * 145.01733 * 26 25 9 44 44 H 1.08993 * 117.49961 * 214.98139 * 27 25 9 45 45 H 1.09002 * 117.49657 * 359.97438 * 27 25 9 46 46 H 1.07999 * 126.64240 * 179.78042 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 -0.0006 5 6 3.6261 -0.6680 -0.0015 6 6 4.8379 -1.4939 -0.0029 7 8 4.7472 -2.7075 -0.0041 8 7 6.0521 -0.9089 -0.0028 9 6 7.2627 -1.7339 0.0020 10 1 7.0915 -2.6337 -0.5889 11 6 8.4231 -0.9404 -0.6019 12 7 8.0457 -0.4617 -1.9385 13 6 9.1379 0.3068 -2.5503 14 6 8.7147 0.7808 -3.9168 15 8 7.6118 0.5051 -4.3396 16 7 9.5621 1.5102 -4.6694 17 6 9.1773 1.9409 -5.9127 18 1 8.1949 1.6961 -6.2889 19 6 10.0506 2.6933 -6.6885 20 7 11.2457 2.9915 -6.2305 21 14 9.5265 3.2796 -8.3829 22 1 8.3239 4.1419 -8.2582 23 1 10.6309 4.0562 -9.0015 24 1 9.2083 2.1066 -9.2361 25 6 7.6070 -2.1261 1.4403 26 6 7.8495 -3.6089 1.7295 27 6 6.5672 -2.9326 2.2209 28 6 2.3408 -1.1291 -0.0066 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3634 0.8897 0.5142 32 1 1.9769 2.1146 0.0004 33 1 6.1245 0.0584 -0.0014 34 1 8.6524 -0.0882 0.0378 35 1 9.3004 -1.5824 -0.6803 36 1 7.1973 0.0832 -1.9012 37 1 9.3718 1.1677 -1.9239 38 1 10.0206 -0.3262 -2.6421 39 1 10.4443 1.7303 -4.3314 40 1 11.8556 3.5165 -6.7723 41 1 8.2021 -1.4012 1.9955 42 1 7.7641 -4.3048 0.8950 43 1 8.6039 -3.8594 2.4753 44 1 6.4784 -2.7384 3.2897 45 1 5.6376 -3.1834 1.7098 46 1 2.0267 -2.1624 -0.0119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276640664.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:18 Heat of formation + Delta-G solvation = -31.103071 kcal Electronic energy + Delta-G solvation = -28301.422324 eV Core-core repulsion = 24193.619860 eV Total energy + Delta-G solvation = -4107.802464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.89110 -40.10417 -38.31257 -37.50573 -35.69211 -34.55805 -34.00957 -33.54453 -31.24785 -30.89959 -29.49829 -27.52197 -26.34232 -24.28166 -23.69621 -22.41428 -22.08509 -21.33062 -20.55439 -20.24051 -19.25950 -18.15915 -17.85965 -16.79983 -16.59541 -16.41088 -16.05991 -15.68475 -15.34843 -14.98197 -14.54975 -14.29318 -14.26436 -13.80508 -13.79335 -13.49502 -13.44186 -13.26075 -13.23190 -12.86578 -12.56584 -12.05443 -11.99602 -11.88266 -11.79359 -11.53385 -11.49755 -11.42956 -11.01715 -10.58384 -10.44635 -10.37704 -10.22150 -10.16896 -9.92080 -9.50559 -9.22502 -8.77192 -8.48283 -8.10621 -7.96728 -6.42253 -3.83024 0.89425 2.09009 2.49522 2.97990 3.04681 3.19880 3.25495 3.30065 3.76639 3.89739 4.00796 4.23398 4.44850 4.53023 4.69615 4.70702 4.78569 4.92974 4.97508 5.04480 5.10259 5.22221 5.23851 5.33081 5.36290 5.39113 5.54355 5.58081 5.59481 5.68465 5.70396 5.73687 5.78822 5.88168 5.94911 6.06049 6.14322 6.17364 6.24522 6.32450 6.63683 7.12197 7.30524 7.54633 7.57353 7.95552 8.05441 8.60744 9.17338 9.53490 10.05148 10.75438 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009979 B = 0.002698 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.103097 B =10377.299114 C =12724.871064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.196 4.196 3 C -0.007 4.007 4 O -0.160 6.160 5 C -0.074 4.074 6 C 0.611 3.389 7 O -0.518 6.518 8 N -0.707 5.707 9 C 0.179 3.821 10 H 0.102 0.898 11 C 0.054 3.946 12 N -0.668 5.668 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.582 6.582 16 N -0.563 5.563 17 C -0.300 4.300 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.172 4.172 26 C -0.167 4.167 27 C -0.183 4.183 28 C -0.118 4.118 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.209 0.791 33 H 0.403 0.597 34 H 0.034 0.966 35 H 0.091 0.909 36 H 0.348 0.652 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.117 0.883 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.171 -5.211 19.451 23.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.198 4.198 3 C -0.077 4.077 4 O -0.055 6.055 5 C -0.126 4.126 6 C 0.397 3.603 7 O -0.396 6.396 8 N -0.357 5.357 9 C 0.074 3.926 10 H 0.120 0.880 11 C -0.076 4.076 12 N -0.301 5.301 13 C -0.082 4.082 14 C 0.225 3.775 15 O -0.466 6.466 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.192 4.192 26 C -0.205 4.205 27 C -0.220 4.220 28 C -0.139 4.139 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.225 0.775 33 H 0.237 0.763 34 H 0.052 0.948 35 H 0.109 0.891 36 H 0.168 0.832 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.105 0.895 45 H 0.135 0.865 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.339 -6.552 18.729 23.366 hybrid contribution 0.331 1.870 -0.130 1.903 sum -12.008 -4.682 18.599 22.628 Atomic orbital electron populations 1.20178 0.88635 1.02732 1.02443 1.20487 0.97734 0.92429 1.09128 1.24213 0.79910 1.00091 1.03486 1.84067 1.29375 1.21666 1.70438 1.22055 0.96169 0.80625 1.13718 1.16435 0.81191 0.86350 0.76275 1.90806 1.85905 1.12227 1.50710 1.45876 1.05258 1.10600 1.73940 1.20674 0.82988 0.95335 0.93563 0.87971 1.22238 0.97321 0.98501 0.89500 1.60019 1.06124 1.44732 1.19192 1.21689 0.94903 0.96435 0.95190 1.19798 0.86732 0.83884 0.87093 1.90535 1.22032 1.60491 1.73540 1.41849 1.15722 1.46549 1.15862 1.19657 1.01734 1.29830 0.91713 0.87991 1.25260 0.95179 0.97302 1.00172 1.69607 1.06850 1.39210 1.38692 0.85916 0.77940 0.78851 0.81511 1.19918 1.20966 1.19858 1.22659 1.04673 0.95124 0.96709 1.22936 0.99869 0.94110 1.03546 1.23278 0.95487 1.03580 0.99650 1.21823 0.90546 1.00535 1.01003 0.91170 0.91339 0.91491 0.77468 0.76252 0.94816 0.89061 0.83211 0.93808 0.89375 0.77457 0.91820 0.87735 0.88427 0.88909 0.89548 0.86484 0.82329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.39 36.01 0.37 -0.17 16 2 C -0.20 -1.86 6.14 -104.93 -0.64 -2.50 16 3 C -0.01 -0.06 12.00 29.63 0.36 0.29 16 4 O -0.16 -1.84 10.40 5.01 0.05 -1.79 16 5 C -0.07 -0.93 7.13 -36.79 -0.26 -1.19 16 6 C 0.61 8.27 7.11 -12.86 -0.09 8.18 16 7 O -0.52 -8.09 13.88 5.20 0.07 -8.02 16 8 N -0.71 -8.39 4.33 -55.12 -0.24 -8.63 16 9 C 0.18 2.08 2.58 -67.93 -0.18 1.90 16 10 H 0.10 1.43 7.34 -51.93 -0.38 1.05 16 11 C 0.05 0.64 5.28 -3.82 -0.02 0.62 16 12 N -0.67 -10.68 6.12 -115.06 -0.70 -11.38 16 13 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 14 C 0.44 10.41 7.82 -10.98 -0.09 10.33 16 15 O -0.58 -16.00 15.78 5.55 0.09 -15.91 16 16 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 17 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 18 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 21 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C -0.17 -1.71 5.36 -90.61 -0.49 -2.20 16 26 C -0.17 -1.60 10.18 -26.69 -0.27 -1.87 16 27 C -0.18 -1.93 9.73 -26.69 -0.26 -2.19 16 28 C -0.12 -1.35 10.57 -39.39 -0.42 -1.77 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.21 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.40 4.30 7.91 -40.82 -0.32 3.98 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 1.01 8.14 -51.94 -0.42 0.58 16 36 H 0.35 5.81 7.28 -39.29 -0.29 5.52 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.10 0.92 8.11 -51.93 -0.42 0.50 16 42 H 0.10 0.99 8.05 -51.93 -0.42 0.57 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.12 1.50 5.00 -51.93 -0.26 1.24 16 46 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 391.79 15.07 5.90 5.90 Total: -1.00 -33.51 391.79 -8.01 -41.52 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -6.57 Total: 18.12 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -2.25 Total: 2.23 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.28 Total: -58.17 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: 0.21 Total: -25.71 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.51 -8.01 -41.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276640664.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.418 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds