Wall clock time and date at job start Tue Mar 31 2020 19:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35129 * 126.43940 * 2 1 4 4 O 1.33929 * 108.76678 * 180.02562 * 3 2 1 5 5 C 1.34909 * 109.38468 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98840 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99639 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 H 1.08999 * 109.47480 * 35.27807 * 9 8 6 11 11 C 1.52999 * 109.47493 * 155.28120 * 9 8 6 12 12 N 1.46909 * 109.46509 * 305.00232 * 11 9 8 13 13 C 1.46896 * 110.99741 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.47056 * 180.02562 * 13 12 11 15 15 O 1.21293 * 119.99964 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99908 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99723 * 179.97438 * 16 14 13 18 18 H 1.08007 * 120.00134 * 0.02562 * 17 16 14 19 19 C 1.38952 * 120.00194 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99341 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00285 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46832 * 60.00726 * 21 19 17 23 23 H 1.48503 * 109.47115 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47265 * 300.00535 * 21 19 17 25 25 C 1.53008 * 109.47014 * 275.27733 * 9 8 6 26 26 C 1.53007 * 117.49696 * 128.74932 * 25 9 8 27 27 C 1.52998 * 117.50017 * 60.09194 * 25 9 8 28 28 C 1.36549 * 108.02412 * 0.22292 * 5 4 3 29 29 H 1.08999 * 109.47086 * 89.97980 * 1 2 3 30 30 H 1.09002 * 109.46978 * 209.97112 * 1 2 3 31 31 H 1.08995 * 109.47714 * 329.97469 * 1 2 3 32 32 H 1.08005 * 125.61727 * 0.02562 * 3 2 1 33 33 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.47318 * 64.99083 * 11 9 8 35 35 H 1.08988 * 109.47710 * 185.00333 * 11 9 8 36 36 H 1.00898 * 111.00059 * 56.04358 * 12 11 9 37 37 H 1.09003 * 109.47432 * 299.99509 * 13 12 11 38 38 H 1.08997 * 109.47699 * 59.99569 * 13 12 11 39 39 H 0.96998 * 120.00034 * 359.97438 * 16 14 13 40 40 H 0.97004 * 119.99286 * 179.97438 * 20 19 17 41 41 H 1.08992 * 115.54981 * 274.41455 * 25 9 8 42 42 H 1.08999 * 117.49485 * 0.02562 * 26 25 9 43 43 H 1.09001 * 117.49917 * 145.01733 * 26 25 9 44 44 H 1.08993 * 117.49961 * 214.98139 * 27 25 9 45 45 H 1.09002 * 117.49657 * 359.97438 * 27 25 9 46 46 H 1.07999 * 126.64240 * 179.78042 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 -0.0006 5 6 3.6261 -0.6680 -0.0015 6 6 4.8379 -1.4939 -0.0029 7 8 4.7472 -2.7075 -0.0041 8 7 6.0521 -0.9089 -0.0028 9 6 7.2627 -1.7339 0.0020 10 1 7.0915 -2.6337 -0.5889 11 6 8.4231 -0.9404 -0.6019 12 7 8.0457 -0.4617 -1.9385 13 6 9.1379 0.3068 -2.5503 14 6 8.7147 0.7808 -3.9168 15 8 7.6118 0.5051 -4.3396 16 7 9.5621 1.5102 -4.6694 17 6 9.1773 1.9409 -5.9127 18 1 8.1949 1.6961 -6.2889 19 6 10.0506 2.6933 -6.6885 20 7 11.2457 2.9915 -6.2305 21 14 9.5265 3.2796 -8.3829 22 1 8.3239 4.1419 -8.2582 23 1 10.6309 4.0562 -9.0015 24 1 9.2083 2.1066 -9.2361 25 6 7.6070 -2.1261 1.4403 26 6 7.8495 -3.6089 1.7295 27 6 6.5672 -2.9326 2.2209 28 6 2.3408 -1.1291 -0.0066 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3634 0.8897 0.5142 32 1 1.9769 2.1146 0.0004 33 1 6.1245 0.0584 -0.0014 34 1 8.6524 -0.0882 0.0378 35 1 9.3004 -1.5824 -0.6803 36 1 7.1973 0.0832 -1.9012 37 1 9.3718 1.1677 -1.9239 38 1 10.0206 -0.3262 -2.6421 39 1 10.4443 1.7303 -4.3314 40 1 11.8556 3.5165 -6.7723 41 1 8.2021 -1.4012 1.9955 42 1 7.7641 -4.3048 0.8950 43 1 8.6039 -3.8594 2.4753 44 1 6.4784 -2.7384 3.2897 45 1 5.6376 -3.1834 1.7098 46 1 2.0267 -2.1624 -0.0119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276640664.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:17 Heat of formation + Delta-G solvation = -55.716454 kcal Electronic energy + Delta-G solvation = -28302.489641 eV Core-core repulsion = 24193.619860 eV Total energy + Delta-G solvation = -4108.869781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.71115 -41.09611 -40.12826 -38.51444 -36.83636 -35.91837 -35.33088 -34.71022 -33.27006 -31.80938 -30.56232 -28.29940 -27.79296 -25.92100 -24.69745 -23.23381 -23.08536 -22.17953 -21.48974 -21.22982 -20.93841 -19.92043 -18.99636 -17.89772 -17.70551 -17.47337 -17.10763 -16.87768 -16.66846 -16.33882 -15.93697 -15.82833 -15.39726 -15.14175 -15.05236 -14.49291 -14.38280 -14.15079 -14.10078 -13.95958 -13.54269 -13.52024 -13.25762 -13.01065 -12.91455 -12.87462 -12.59347 -12.51450 -12.43977 -12.32167 -12.12954 -11.54599 -11.51177 -11.20560 -11.05625 -10.73652 -10.38606 -10.17167 -10.02333 -9.56385 -9.36001 -8.47344 -5.96018 0.00176 1.32154 1.39083 1.41205 1.51975 1.63727 2.04676 2.06653 2.11065 2.28501 2.80871 3.00856 3.20019 3.44240 3.65395 3.74334 3.80875 3.95337 4.03422 4.08902 4.16716 4.26733 4.31315 4.35360 4.42866 4.52592 4.60421 4.63469 4.71192 4.82917 4.85666 4.86412 4.91569 5.01725 5.04731 5.06867 5.25327 5.27732 5.39955 5.42230 5.49356 5.81479 5.84264 6.06759 6.30843 6.36953 6.59720 6.97541 7.12053 7.55611 8.11468 8.69765 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009979 B = 0.002698 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.103097 B =10377.299114 C =12724.871064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.207 4.207 3 C 0.001 3.999 4 O -0.170 6.170 5 C -0.104 4.104 6 C 0.606 3.394 7 O -0.550 6.550 8 N -0.700 5.700 9 C 0.181 3.819 10 H 0.073 0.927 11 C 0.061 3.939 12 N -0.687 5.687 13 C 0.066 3.934 14 C 0.435 3.565 15 O -0.626 6.626 16 N -0.571 5.571 17 C -0.335 4.335 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.919 5.919 21 Si 0.991 3.009 22 H -0.271 1.271 23 H -0.269 1.269 24 H -0.274 1.274 25 C -0.164 4.164 26 C -0.160 4.160 27 C -0.193 4.193 28 C -0.126 4.126 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.249 0.751 33 H 0.409 0.591 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.341 0.659 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.766 -3.865 20.568 24.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.208 4.208 3 C -0.069 4.069 4 O -0.065 6.065 5 C -0.155 4.155 6 C 0.394 3.606 7 O -0.430 6.430 8 N -0.350 5.350 9 C 0.077 3.923 10 H 0.091 0.909 11 C -0.068 4.068 12 N -0.321 5.321 13 C -0.067 4.067 14 C 0.223 3.777 15 O -0.512 6.512 16 N -0.209 5.209 17 C -0.465 4.465 18 H 0.095 0.905 19 C -0.211 4.211 20 N -0.560 5.560 21 Si 0.815 3.185 22 H -0.196 1.196 23 H -0.193 1.193 24 H -0.199 1.199 25 C -0.184 4.184 26 C -0.198 4.198 27 C -0.230 4.230 28 C -0.147 4.147 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.265 0.735 33 H 0.245 0.755 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.160 0.840 37 H 0.091 0.909 38 H 0.126 0.874 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.145 0.855 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.118 0.882 45 H 0.109 0.891 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.896 -5.196 19.874 23.738 hybrid contribution 0.126 1.440 -0.449 1.514 sum -11.770 -3.756 19.425 23.022 Atomic orbital electron populations 1.20256 0.86482 1.04011 1.03029 1.20863 0.99249 0.91686 1.09012 1.25089 0.78868 1.01737 1.01179 1.84052 1.30778 1.20983 1.70693 1.21942 0.96113 0.81300 1.16189 1.16629 0.81932 0.86179 0.75910 1.90781 1.86447 1.13487 1.52334 1.45838 1.04961 1.10912 1.73261 1.20611 0.82925 0.94261 0.94477 0.90890 1.22297 0.97436 0.99415 0.87684 1.59989 1.05597 1.44517 1.21952 1.21556 0.95586 0.97962 0.91554 1.20943 0.85690 0.82182 0.88919 1.90505 1.23939 1.61687 1.75105 1.41909 1.16233 1.47187 1.15552 1.19612 1.01422 1.31873 0.93597 0.90529 1.26018 0.95047 0.96716 1.03350 1.69662 1.07308 1.39126 1.39886 0.85014 0.78011 0.78340 0.77134 1.19615 1.19346 1.19914 1.22633 1.04490 0.95838 0.95423 1.22996 0.99635 0.93620 1.03518 1.23208 0.94890 1.04683 1.00192 1.22080 0.90869 1.01345 1.00400 0.90837 0.91005 0.89341 0.73545 0.75515 0.92102 0.87782 0.83973 0.90856 0.87368 0.76860 0.91246 0.85523 0.89568 0.86681 0.88187 0.89075 0.82456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.39 71.24 0.74 -0.18 16 2 C -0.21 -3.73 6.14 -20.06 -0.12 -3.86 16 3 C 0.00 0.01 12.00 67.10 0.81 0.81 16 4 O -0.17 -3.84 10.40 -4.97 -0.05 -3.89 16 5 C -0.10 -2.70 7.13 24.07 0.17 -2.53 16 6 C 0.61 17.26 7.11 86.44 0.61 17.88 16 7 O -0.55 -18.39 13.88 -4.33 -0.06 -18.45 16 8 N -0.70 -16.82 4.33 -446.51 -1.94 -18.76 16 9 C 0.18 4.15 2.58 44.99 0.12 4.27 16 10 H 0.07 2.12 7.34 -2.39 -0.02 2.10 16 11 C 0.06 1.30 5.28 86.30 0.46 1.75 16 12 N -0.69 -21.32 6.12 -517.94 -3.17 -24.49 16 13 C 0.07 2.16 6.17 85.56 0.53 2.69 16 14 C 0.44 20.70 7.82 87.66 0.69 21.39 16 15 O -0.63 -35.27 15.78 -3.07 -0.05 -35.32 16 16 N -0.57 -29.24 5.29 -306.97 -1.62 -30.86 16 17 C -0.34 -19.14 9.68 84.04 0.81 -18.33 16 18 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 19 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 20 N -0.92 -49.36 13.05 21.66 0.28 -49.08 16 21 Si 0.99 42.99 29.55 68.60 2.03 45.01 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 C -0.16 -3.03 5.36 -10.79 -0.06 -3.09 16 26 C -0.16 -2.89 10.18 30.62 0.31 -2.58 16 27 C -0.19 -4.00 9.73 30.62 0.30 -3.71 16 28 C -0.13 -2.98 10.57 22.39 0.24 -2.74 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.25 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.41 8.65 7.91 -92.71 -0.73 7.91 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.34 11.32 7.28 -89.70 -0.65 10.67 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 38 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.40 19.12 7.90 -92.71 -0.73 18.39 16 40 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.13 1.83 8.11 -2.39 -0.02 1.81 16 42 H 0.09 1.75 8.05 -2.39 -0.02 1.73 16 43 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.09 2.45 5.00 -2.39 -0.01 2.44 16 46 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -75.02 391.79 0.41 -74.61 By element: Atomic # 1 Polarization: 50.68 SS G_CDS: -1.08 Total: 49.60 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 6.06 Total: 11.63 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -6.44 Total: -123.20 kcal Atomic # 8 Polarization: -57.51 SS G_CDS: -0.16 Total: -57.67 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -75.02 0.41 -74.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276640664.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.898 kcal (2) G-P(sol) polarization free energy of solvation -75.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds