Wall clock time and date at job start Tue Mar 31 2020 19:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35266 * 126.70772 * 2 1 4 4 C 1.41936 * 103.95957 * 179.97438 * 3 2 1 5 5 O 1.35705 * 126.87889 * 179.97438 * 4 3 2 6 6 C 1.42902 * 117.00076 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47380 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99736 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99889 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99704 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.32504 * 35.35642 * 10 9 7 12 12 C 1.53027 * 109.32568 * 154.99879 * 10 9 7 13 13 C 1.53970 * 108.83522 * 175.67929 * 12 10 9 14 14 H 1.08997 * 112.99943 * 169.00858 * 13 12 10 15 15 C 1.55429 * 106.40823 * 293.82557 * 13 12 10 16 16 C 1.55172 * 100.35775 * 73.37354 * 15 13 12 17 17 H 1.08999 * 112.48739 * 162.66397 * 16 15 13 18 18 C 1.52991 * 109.32574 * 275.88753 * 10 9 7 19 19 N 1.47791 * 104.25035 * 40.54316 * 16 15 13 20 20 C 1.36945 * 125.85162 * 153.54392 * 19 16 15 21 21 H 1.07997 * 119.99756 * 359.97438 * 20 19 16 22 22 C 1.38805 * 119.99878 * 179.97438 * 20 19 16 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.47078 * 108.29372 * 333.80724 * 19 16 15 29 29 N 1.30620 * 106.24057 * 0.23820 * 4 3 2 30 30 O 1.20918 * 111.49620 * 359.57356 * 29 4 3 31 31 H 1.08997 * 109.47608 * 89.99759 * 1 2 3 32 32 H 1.09007 * 109.47168 * 210.00234 * 1 2 3 33 33 H 1.09004 * 109.46875 * 329.99655 * 1 2 3 34 34 H 1.08001 * 128.02124 * 359.97438 * 3 2 1 35 35 H 1.09003 * 109.46790 * 59.99703 * 6 5 4 36 36 H 1.09000 * 109.46857 * 300.00103 * 6 5 4 37 37 H 0.96999 * 120.00224 * 359.97438 * 9 7 6 38 38 H 1.08997 * 109.57733 * 55.87196 * 12 10 9 39 39 H 1.08999 * 109.68325 * 295.54810 * 12 10 9 40 40 H 1.08999 * 111.23841 * 315.58821 * 15 13 12 41 41 H 1.09006 * 111.23262 * 191.14470 * 15 13 12 42 42 H 1.08997 * 109.53167 * 64.76004 * 18 10 9 43 43 H 1.09002 * 109.52994 * 304.52893 * 18 10 9 44 44 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.97515 * 120.19260 * 28 19 16 46 46 H 1.09001 * 109.97644 * 241.47965 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0844 0.0000 4 6 3.6245 0.5356 0.0006 5 8 4.7953 1.2217 0.0004 6 6 5.9988 0.4513 0.0017 7 6 7.1879 1.3770 0.0018 8 8 7.0212 2.5783 0.0014 9 7 8.4367 0.8699 0.0025 10 6 9.5927 1.7699 0.0020 11 1 9.3618 2.6539 0.5966 12 6 10.7961 1.0487 0.6131 13 6 12.0298 1.9639 0.5082 14 1 12.8788 1.6025 1.0885 15 6 12.3416 2.1085 -1.0076 16 6 11.1844 3.0465 -1.4422 17 1 11.3724 3.5222 -2.4047 18 6 9.9015 2.1967 -1.4343 19 7 11.0760 4.0253 -0.3402 20 6 10.5957 5.3033 -0.4469 21 1 10.2543 5.6738 -1.4022 22 6 10.5478 6.1224 0.6726 23 7 10.9644 5.6710 1.8368 24 14 9.8932 7.8659 0.5270 25 1 11.0112 8.7892 0.2062 26 1 8.8771 7.9244 -0.5544 27 1 9.2711 8.2701 1.8133 28 6 11.5784 3.3937 0.8893 29 7 3.4765 -0.7622 -0.0043 30 8 2.3084 -1.0749 0.0007 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 2.0311 2.1263 -0.0004 35 1 6.0281 -0.1783 -0.8876 36 1 6.0274 -0.1764 0.8923 37 1 8.5700 -0.0909 0.0032 38 1 10.9813 0.1223 0.0697 39 1 10.5962 0.8239 1.6608 40 1 12.2824 1.1464 -1.5164 41 1 13.3120 2.5784 -1.1680 42 1 9.0720 2.7854 -1.8259 43 1 10.0466 1.3118 -2.0542 44 1 10.9312 6.2436 2.6190 45 1 12.4227 3.9609 1.2812 46 1 10.7842 3.3448 1.6342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278954333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:46 Heat of formation + Delta-G solvation = 30.161789 kcal Electronic energy + Delta-G solvation = -29289.146035 eV Core-core repulsion = 25184.000215 eV Total energy + Delta-G solvation = -4105.145821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.10928 -40.23368 -39.31463 -38.06638 -34.57874 -34.10656 -32.84130 -32.72903 -30.68419 -30.21382 -28.80451 -28.21611 -27.42263 -25.29247 -23.63137 -23.12264 -22.30507 -21.18751 -20.23055 -19.43634 -18.71513 -18.12408 -18.06956 -17.16580 -16.93365 -16.64452 -16.21968 -15.78434 -14.86507 -14.52670 -14.31121 -14.16254 -14.05397 -13.84251 -13.62046 -13.54185 -13.14253 -12.88556 -12.75489 -12.72720 -12.14168 -11.86603 -11.80349 -11.69028 -11.55067 -11.33946 -11.21776 -10.71124 -10.63998 -10.52691 -9.94259 -9.90628 -9.76911 -9.73561 -9.66407 -9.44813 -9.39949 -9.31407 -8.64960 -8.51046 -6.75457 -5.61356 -2.93697 1.15853 2.06207 2.25485 2.78088 2.84624 3.48870 3.54233 3.54788 3.57060 3.96884 4.50871 4.59622 4.68108 4.71621 4.89101 4.91130 4.93676 4.98071 5.21718 5.23214 5.25514 5.39205 5.42997 5.58181 5.63491 5.64655 5.88029 5.89236 6.04180 6.07372 6.08123 6.12959 6.22742 6.56194 6.61920 6.65786 6.78076 6.84051 6.88949 6.98737 7.06435 7.63060 7.65295 7.71501 7.90445 8.01062 8.33655 8.44363 9.31576 9.91859 10.57267 11.50697 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.002816 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.246792 B = 9939.142350 C =11463.019087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.011 4.011 3 C -0.232 4.232 4 C 0.216 3.784 5 O -0.253 6.253 6 C 0.046 3.954 7 C 0.508 3.492 8 O -0.498 6.498 9 N -0.722 5.722 10 C 0.148 3.852 11 H 0.117 0.883 12 C -0.111 4.111 13 C -0.119 4.119 14 H 0.082 0.918 15 C -0.129 4.129 16 C 0.157 3.843 17 H 0.066 0.934 18 C -0.136 4.136 19 N -0.595 5.595 20 C -0.220 4.220 21 H 0.076 0.924 22 C -0.007 4.007 23 N -0.924 5.924 24 Si 0.909 3.091 25 H -0.291 1.291 26 H -0.281 1.281 27 H -0.291 1.291 28 C 0.181 3.819 29 N -0.414 5.414 30 O 0.096 5.904 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.179 0.821 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.392 0.608 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.044 0.956 44 H 0.250 0.750 45 H 0.044 0.956 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.091 -17.190 -3.587 22.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.075 4.075 3 C -0.254 4.254 4 C 0.018 3.982 5 O -0.158 6.158 6 C -0.033 4.033 7 C 0.290 3.710 8 O -0.371 6.371 9 N -0.375 5.375 10 C 0.046 3.954 11 H 0.134 0.866 12 C -0.149 4.149 13 C -0.138 4.138 14 H 0.101 0.899 15 C -0.168 4.168 16 C 0.048 3.952 17 H 0.084 0.916 18 C -0.177 4.177 19 N -0.320 5.320 20 C -0.349 4.349 21 H 0.094 0.906 22 C -0.203 4.203 23 N -0.572 5.572 24 Si 0.740 3.260 25 H -0.218 1.218 26 H -0.207 1.207 27 H -0.218 1.218 28 C 0.056 3.944 29 N -0.143 5.143 30 O 0.036 5.964 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.197 0.803 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.225 0.775 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.362 -16.774 -3.425 21.717 hybrid contribution -0.496 0.995 0.000 1.112 sum -13.858 -15.778 -3.425 21.277 Atomic orbital electron populations 1.20376 0.83502 1.04911 1.04363 1.24333 0.96458 0.85599 1.01094 1.21846 0.88354 1.01813 1.13342 1.22100 0.88628 0.87976 0.99482 1.86334 1.09971 1.30674 1.88797 1.22541 0.82623 0.93809 1.04280 1.19826 0.83817 0.89126 0.78195 1.90869 1.85156 1.14736 1.46317 1.46055 1.05451 1.10214 1.75776 1.21245 0.82592 0.93308 0.98247 0.86568 1.21955 0.95082 0.97802 1.00101 1.22844 0.95854 0.98587 0.96556 0.89928 1.23006 0.99105 0.98682 0.95959 1.21509 0.91279 0.89341 0.93024 0.91632 1.22613 1.01023 0.98839 0.95275 1.44622 1.73709 1.10289 1.03369 1.19012 1.34142 0.86787 0.94919 0.90596 1.24735 1.01533 0.98457 0.95569 1.69939 1.52856 1.35384 0.98975 0.86141 0.78355 0.84573 0.76890 1.21830 1.20695 1.21769 1.21287 0.97983 0.86271 0.88848 1.74148 0.97891 1.14245 1.27987 1.84774 1.10324 1.31990 1.69293 0.89112 0.89572 0.88754 0.80322 0.88931 0.88906 0.77496 0.92704 0.92071 0.92230 0.91823 0.92198 0.93748 0.93928 0.93753 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.45 36.01 0.38 0.10 16 2 C -0.01 -0.10 7.48 -35.37 -0.26 -0.36 16 3 C -0.23 -2.48 11.10 -39.23 -0.44 -2.91 16 4 C 0.22 2.97 8.01 -16.65 -0.13 2.84 16 5 O -0.25 -4.07 9.74 -38.73 -0.38 -4.45 16 6 C 0.05 0.63 6.14 36.00 0.22 0.85 16 7 C 0.51 8.79 7.86 -10.99 -0.09 8.71 16 8 O -0.50 -11.61 16.16 -14.35 -0.23 -11.84 16 9 N -0.72 -10.87 5.07 -53.80 -0.27 -11.14 16 10 C 0.15 2.74 2.07 -67.92 -0.14 2.60 16 11 H 0.12 2.84 5.41 -51.93 -0.28 2.56 16 12 C -0.11 -1.75 4.96 -26.21 -0.13 -1.88 16 13 C -0.12 -2.12 4.32 -87.93 -0.38 -2.50 16 14 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 15 C -0.13 -2.20 6.18 -24.29 -0.15 -2.35 16 16 C 0.16 3.21 4.30 -65.61 -0.28 2.93 16 17 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 18 C -0.14 -2.57 5.27 -26.28 -0.14 -2.71 16 19 N -0.60 -15.07 2.42 -161.38 -0.39 -15.46 16 20 C -0.22 -6.30 10.29 -15.06 -0.16 -6.46 16 21 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 22 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 23 N -0.92 -27.80 10.35 55.49 0.57 -27.23 16 24 Si 0.91 23.35 29.55 -169.99 -5.02 18.33 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 28 C 0.18 4.32 4.10 -2.83 -0.01 4.31 16 29 N -0.41 -5.38 11.54 30.38 0.35 -5.03 16 30 O 0.10 1.04 11.19 17.06 0.19 1.23 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.21 8.14 -51.92 -0.42 -0.21 16 33 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.39 4.24 8.60 -40.82 -0.35 3.88 16 38 H 0.05 0.71 7.97 -51.93 -0.41 0.29 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.04 0.71 8.00 -51.93 -0.42 0.29 16 44 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 46 H 0.05 1.24 6.17 -51.93 -0.32 0.92 16 LS Contribution 372.29 15.07 5.61 5.61 Total: -1.00 -36.19 372.29 -8.14 -44.33 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.77 Total: 2.78 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.81 Total: 2.87 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.26 Total: -58.86 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.42 Total: -15.06 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.19 -8.14 -44.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278954333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.490 kcal (2) G-P(sol) polarization free energy of solvation -36.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds