Wall clock time and date at job start Tue Mar 31 2020 19:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35266 * 126.70772 * 2 1 4 4 C 1.41936 * 103.95957 * 179.97438 * 3 2 1 5 5 O 1.35705 * 126.87889 * 179.97438 * 4 3 2 6 6 C 1.42902 * 117.00076 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47380 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99736 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99889 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99704 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.32504 * 35.35642 * 10 9 7 12 12 C 1.53027 * 109.32568 * 154.99879 * 10 9 7 13 13 C 1.53970 * 108.83522 * 175.67929 * 12 10 9 14 14 H 1.08997 * 112.99943 * 169.00858 * 13 12 10 15 15 C 1.55429 * 106.40823 * 293.82557 * 13 12 10 16 16 C 1.55172 * 100.35775 * 73.37354 * 15 13 12 17 17 H 1.08999 * 112.48739 * 162.66397 * 16 15 13 18 18 C 1.52991 * 109.32574 * 275.88753 * 10 9 7 19 19 N 1.47791 * 104.25035 * 40.54316 * 16 15 13 20 20 C 1.36945 * 125.85162 * 153.54392 * 19 16 15 21 21 H 1.07997 * 119.99756 * 359.97438 * 20 19 16 22 22 C 1.38805 * 119.99878 * 179.97438 * 20 19 16 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.47078 * 108.29372 * 333.80724 * 19 16 15 29 29 N 1.30620 * 106.24057 * 0.23820 * 4 3 2 30 30 O 1.20918 * 111.49620 * 359.57356 * 29 4 3 31 31 H 1.08997 * 109.47608 * 89.99759 * 1 2 3 32 32 H 1.09007 * 109.47168 * 210.00234 * 1 2 3 33 33 H 1.09004 * 109.46875 * 329.99655 * 1 2 3 34 34 H 1.08001 * 128.02124 * 359.97438 * 3 2 1 35 35 H 1.09003 * 109.46790 * 59.99703 * 6 5 4 36 36 H 1.09000 * 109.46857 * 300.00103 * 6 5 4 37 37 H 0.96999 * 120.00224 * 359.97438 * 9 7 6 38 38 H 1.08997 * 109.57733 * 55.87196 * 12 10 9 39 39 H 1.08999 * 109.68325 * 295.54810 * 12 10 9 40 40 H 1.08999 * 111.23841 * 315.58821 * 15 13 12 41 41 H 1.09006 * 111.23262 * 191.14470 * 15 13 12 42 42 H 1.08997 * 109.53167 * 64.76004 * 18 10 9 43 43 H 1.09002 * 109.52994 * 304.52893 * 18 10 9 44 44 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.97515 * 120.19260 * 28 19 16 46 46 H 1.09001 * 109.97644 * 241.47965 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0844 0.0000 4 6 3.6245 0.5356 0.0006 5 8 4.7953 1.2217 0.0004 6 6 5.9988 0.4513 0.0017 7 6 7.1879 1.3770 0.0018 8 8 7.0212 2.5783 0.0014 9 7 8.4367 0.8699 0.0025 10 6 9.5927 1.7699 0.0020 11 1 9.3618 2.6539 0.5966 12 6 10.7961 1.0487 0.6131 13 6 12.0298 1.9639 0.5082 14 1 12.8788 1.6025 1.0885 15 6 12.3416 2.1085 -1.0076 16 6 11.1844 3.0465 -1.4422 17 1 11.3724 3.5222 -2.4047 18 6 9.9015 2.1967 -1.4343 19 7 11.0760 4.0253 -0.3402 20 6 10.5957 5.3033 -0.4469 21 1 10.2543 5.6738 -1.4022 22 6 10.5478 6.1224 0.6726 23 7 10.9644 5.6710 1.8368 24 14 9.8932 7.8659 0.5270 25 1 11.0112 8.7892 0.2062 26 1 8.8771 7.9244 -0.5544 27 1 9.2711 8.2701 1.8133 28 6 11.5784 3.3937 0.8893 29 7 3.4765 -0.7622 -0.0043 30 8 2.3084 -1.0749 0.0007 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 2.0311 2.1263 -0.0004 35 1 6.0281 -0.1783 -0.8876 36 1 6.0274 -0.1764 0.8923 37 1 8.5700 -0.0909 0.0032 38 1 10.9813 0.1223 0.0697 39 1 10.5962 0.8239 1.6608 40 1 12.2824 1.1464 -1.5164 41 1 13.3120 2.5784 -1.1680 42 1 9.0720 2.7854 -1.8259 43 1 10.0466 1.3118 -2.0542 44 1 10.9312 6.2436 2.6190 45 1 12.4227 3.9609 1.2812 46 1 10.7842 3.3448 1.6342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278954333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:45 Heat of formation + Delta-G solvation = 3.203552 kcal Electronic energy + Delta-G solvation = -29290.315032 eV Core-core repulsion = 25184.000215 eV Total energy + Delta-G solvation = -4106.314818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.97869 -41.68998 -40.66012 -39.40283 -36.19544 -34.82240 -34.75168 -33.60342 -32.40508 -31.72954 -30.44268 -29.08009 -28.41668 -27.22160 -24.96109 -24.51767 -23.56186 -22.28077 -21.63323 -21.21171 -20.20110 -19.08101 -18.97411 -18.94724 -18.10324 -17.90978 -17.37439 -17.23021 -16.59945 -16.26395 -15.81324 -15.37861 -15.32171 -14.93430 -14.82608 -14.40103 -14.17631 -14.12844 -13.92958 -13.82517 -13.48815 -13.43118 -13.26611 -13.25393 -13.01394 -12.87762 -12.67139 -12.52584 -12.18849 -12.15440 -11.92099 -11.66387 -11.45331 -11.19786 -11.06653 -10.85641 -10.69282 -10.55034 -10.30560 -10.10074 -8.84227 -7.84755 -5.16305 0.40766 1.14861 1.19443 1.37058 1.40930 1.41661 1.48313 2.13100 2.40754 2.47599 3.07143 3.33541 3.50467 3.64743 3.79589 3.80240 3.89103 3.90229 3.92160 3.95133 4.09938 4.35656 4.36404 4.40098 4.50343 4.57812 4.65644 4.75068 4.77805 4.78350 4.82260 4.89042 5.08661 5.17663 5.25151 5.26056 5.32244 5.33692 5.47272 5.48597 5.59385 5.72499 5.81179 5.83455 6.22317 6.46933 7.13242 7.15716 7.19613 7.81798 8.45221 9.25193 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.002816 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.246792 B = 9939.142350 C =11463.019087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.014 3.986 3 C -0.258 4.258 4 C 0.189 3.811 5 O -0.287 6.287 6 C 0.057 3.943 7 C 0.504 3.496 8 O -0.571 6.571 9 N -0.700 5.700 10 C 0.154 3.846 11 H 0.047 0.953 12 C -0.100 4.100 13 C -0.107 4.107 14 H 0.112 0.888 15 C -0.111 4.111 16 C 0.140 3.860 17 H 0.063 0.937 18 C -0.125 4.125 19 N -0.615 5.615 20 C -0.228 4.228 21 H 0.070 0.930 22 C -0.068 4.068 23 N -0.949 5.949 24 Si 0.967 3.033 25 H -0.279 1.279 26 H -0.279 1.279 27 H -0.296 1.296 28 C 0.189 3.811 29 N -0.427 5.427 30 O 0.095 5.905 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.190 0.810 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.420 0.580 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.017 0.983 43 H 0.091 0.909 44 H 0.243 0.757 45 H 0.002 0.998 46 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.800 -20.942 -4.880 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.050 4.050 3 C -0.279 4.279 4 C -0.008 4.008 5 O -0.193 6.193 6 C -0.021 4.021 7 C 0.289 3.711 8 O -0.449 6.449 9 N -0.354 5.354 10 C 0.050 3.950 11 H 0.065 0.935 12 C -0.138 4.138 13 C -0.127 4.127 14 H 0.130 0.870 15 C -0.149 4.149 16 C 0.033 3.967 17 H 0.081 0.919 18 C -0.165 4.165 19 N -0.339 5.339 20 C -0.358 4.358 21 H 0.088 0.912 22 C -0.260 4.260 23 N -0.598 5.598 24 Si 0.796 3.204 25 H -0.206 1.206 26 H -0.205 1.205 27 H -0.223 1.223 28 C 0.064 3.936 29 N -0.155 5.155 30 O 0.035 5.965 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.207 0.793 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.258 0.742 38 H 0.127 0.873 39 H 0.085 0.915 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.036 0.964 43 H 0.109 0.891 44 H 0.052 0.948 45 H 0.020 0.980 46 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -14.049 -20.619 -4.753 25.399 hybrid contribution -0.401 2.129 0.356 2.195 sum -14.450 -18.490 -4.397 23.875 Atomic orbital electron populations 1.20686 0.79710 1.06610 1.06048 1.25112 0.98044 0.83942 0.97867 1.22183 0.87661 1.03182 1.14903 1.22459 0.88602 0.88725 1.01012 1.86270 1.11217 1.32366 1.89435 1.22528 0.80486 0.92485 1.06619 1.20573 0.85334 0.88683 0.76475 1.90842 1.86250 1.18071 1.49725 1.45762 1.04041 1.11266 1.74319 1.20890 0.84775 0.92284 0.97045 0.93514 1.21907 0.92121 0.98663 1.01129 1.22801 0.97752 0.94517 0.97585 0.86969 1.22962 0.97095 0.99786 0.95019 1.21878 0.93893 0.89371 0.91585 0.91918 1.22450 0.98409 0.99597 0.96076 1.44856 1.73333 1.10170 1.05579 1.19299 1.33219 0.88654 0.94581 0.91199 1.25498 1.02858 1.02117 0.95566 1.70163 1.54355 1.36109 0.99222 0.85234 0.77963 0.80778 0.76396 1.20584 1.20462 1.22284 1.21029 0.94863 0.89950 0.87749 1.74118 0.99045 1.13861 1.28471 1.84731 1.10046 1.32750 1.68966 0.87173 0.87777 0.87091 0.79283 0.86174 0.86528 0.74248 0.87295 0.91525 0.87287 0.91880 0.96433 0.89088 0.94788 0.98000 0.97886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.45 71.24 0.74 0.45 16 2 C 0.01 0.21 7.48 25.00 0.19 0.40 16 3 C -0.26 -5.39 11.10 22.50 0.25 -5.14 16 4 C 0.19 5.20 8.01 85.79 0.69 5.89 16 5 O -0.29 -9.49 9.74 -71.22 -0.69 -10.19 16 6 C 0.06 1.52 6.14 71.24 0.44 1.95 16 7 C 0.50 17.80 7.86 87.66 0.69 18.49 16 8 O -0.57 -28.51 16.16 16.01 0.26 -28.26 16 9 N -0.70 -20.09 5.07 -442.50 -2.24 -22.34 16 10 C 0.15 5.62 2.07 45.00 0.09 5.71 16 11 H 0.05 2.43 5.41 -2.38 -0.01 2.41 16 12 C -0.10 -2.81 4.96 30.93 0.15 -2.66 16 13 C -0.11 -3.58 4.32 -9.05 -0.04 -3.61 16 14 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 15 C -0.11 -3.37 6.18 32.17 0.20 -3.17 16 16 C 0.14 5.64 4.30 45.79 0.20 5.83 16 17 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 18 C -0.12 -4.58 5.27 30.89 0.16 -4.42 16 19 N -0.61 -32.53 2.42 -664.48 -1.61 -34.13 16 20 C -0.23 -13.79 10.29 84.03 0.86 -12.92 16 21 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 22 C -0.07 -4.19 5.49 84.86 0.47 -3.72 16 23 N -0.95 -60.89 10.35 21.65 0.22 -60.66 16 24 Si 0.97 50.47 29.55 68.60 2.03 52.50 16 25 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 26 H -0.28 -14.28 7.11 99.48 0.71 -13.57 16 27 H -0.30 -15.56 7.11 99.48 0.71 -14.85 16 28 C 0.19 9.45 4.10 86.85 0.36 9.80 16 29 N -0.43 -10.68 11.54 -172.59 -1.99 -12.67 16 30 O 0.09 1.91 11.19 71.23 0.80 2.71 16 31 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.10 0.13 8.14 -2.38 -0.02 0.11 16 33 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.42 7.45 8.60 -92.71 -0.80 6.65 16 38 H 0.11 2.01 7.97 -2.39 -0.02 1.99 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.11 2.35 7.75 -2.39 -0.02 2.34 16 41 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.09 2.51 8.00 -2.39 -0.02 2.49 16 44 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16 45 H 0.00 0.10 7.42 -2.39 -0.02 0.08 16 46 H 0.00 0.17 6.17 -2.39 -0.01 0.16 16 Total: -1.00 -90.67 372.29 2.43 -88.24 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.21 Total: 11.92 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 5.45 Total: 12.87 kcal Atomic # 7 Polarization: -124.19 SS G_CDS: -5.62 Total: -129.80 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: 0.36 Total: -35.73 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 2.03 Total: 52.50 kcal Total: -90.67 2.43 -88.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278954333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.448 kcal (2) G-P(sol) polarization free energy of solvation -90.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds