Wall clock time and date at job start Tue Mar 31 2020 19:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35275 * 126.70876 * 2 1 4 4 C 1.41936 * 103.95634 * 180.10967 * 3 2 1 5 5 O 1.35710 * 126.87549 * 179.91111 * 4 3 2 6 6 C 1.42896 * 116.99905 * 179.70890 * 5 4 3 7 7 C 1.50698 * 109.47114 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00300 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00083 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00214 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.17670 * 49.69813 * 10 9 7 12 12 C 1.53032 * 109.32250 * 290.14617 * 10 9 7 13 13 C 1.53964 * 108.83413 * 295.13926 * 12 10 9 14 14 H 1.08994 * 112.99902 * 168.09815 * 13 12 10 15 15 C 1.55433 * 107.19928 * 293.48909 * 13 12 10 16 16 C 1.56614 * 99.71847 * 72.68944 * 15 13 12 17 17 H 1.08998 * 112.20750 * 163.88606 * 16 15 13 18 18 C 1.52977 * 109.32503 * 169.25788 * 10 9 7 19 19 N 1.47928 * 103.52132 * 42.25280 * 16 15 13 20 20 C 1.36939 * 125.92223 * 153.05208 * 19 16 15 21 21 H 1.08002 * 119.99303 * 6.27743 * 20 19 16 22 22 C 1.38804 * 120.00260 * 186.27571 * 20 19 16 23 23 N 1.31619 * 120.00143 * 7.27541 * 22 20 19 24 24 Si 1.86800 * 119.99961 * 187.27733 * 22 20 19 25 25 H 1.48496 * 109.47457 * 84.99282 * 24 22 20 26 26 H 1.48505 * 109.47474 * 204.99213 * 24 22 20 27 27 H 1.48502 * 109.47353 * 324.99146 * 24 22 20 28 28 C 1.47089 * 108.20758 * 331.60761 * 19 16 15 29 29 N 1.30610 * 106.24505 * 359.65130 * 4 3 2 30 30 O 1.20920 * 111.49870 * 0.22312 * 29 4 3 31 31 H 1.08996 * 109.47476 * 180.30543 * 1 2 3 32 32 H 1.08998 * 109.47396 * 300.31007 * 1 2 3 33 33 H 1.09004 * 109.47149 * 60.30766 * 1 2 3 34 34 H 1.07996 * 128.02185 * 359.97438 * 3 2 1 35 35 H 1.09008 * 109.46904 * 60.00335 * 6 5 4 36 36 H 1.08992 * 109.47220 * 300.00022 * 6 5 4 37 37 H 0.96996 * 119.99725 * 0.02562 * 9 7 6 38 38 H 1.08999 * 109.57603 * 175.33396 * 12 10 9 39 39 H 1.09002 * 109.68646 * 55.01368 * 12 10 9 40 40 H 1.08998 * 111.23490 * 191.43246 * 15 13 12 41 41 H 1.09001 * 111.23614 * 315.88142 * 15 13 12 42 42 H 1.09004 * 109.53229 * 185.06340 * 18 10 9 43 43 H 1.08997 * 109.53465 * 305.21395 * 18 10 9 44 44 H 0.97003 * 119.99860 * 179.97438 * 23 22 20 45 45 H 1.08997 * 109.97550 * 243.14603 * 28 19 16 46 46 H 1.08997 * 109.97487 * 121.90729 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6245 0.5355 -0.0026 5 8 4.7953 1.2217 -0.0053 6 6 5.9988 0.4512 -0.0012 7 6 7.1879 1.3770 -0.0044 8 8 7.0213 2.5782 -0.0092 9 7 8.4367 0.8699 -0.0019 10 6 9.5927 1.7698 -0.0055 11 1 9.4660 2.5186 0.7763 12 6 9.6871 2.4674 -1.3643 13 6 9.9743 1.4108 -2.4467 14 1 9.8520 1.7944 -3.4595 15 6 11.3971 0.8477 -2.1732 16 6 11.1004 -0.0129 -0.8988 17 1 11.8978 -0.7254 -0.6880 18 6 10.8633 0.9628 0.2673 19 7 9.8173 -0.6754 -1.2199 20 6 9.3840 -1.8735 -0.7178 21 1 9.9512 -2.3722 0.0542 22 6 8.2160 -2.4469 -1.2011 23 7 7.6019 -1.9160 -2.2371 24 14 7.5156 -3.9722 -0.3810 25 1 6.6724 -3.5705 0.7734 26 1 6.6897 -4.7251 -1.3589 27 1 8.6279 -4.8336 0.0945 28 6 9.0712 0.1915 -2.1448 29 7 3.4765 -0.7621 0.0037 30 8 2.3084 -1.0749 0.0053 31 1 -0.3634 -1.0276 0.0055 32 1 -0.3634 0.5186 0.8872 33 1 -0.3634 0.5091 -0.8928 34 1 2.0312 2.1263 -0.0004 35 1 6.0281 -0.1815 -0.8883 36 1 6.0273 -0.1732 0.8916 37 1 8.5700 -0.0908 0.0016 38 1 10.4952 3.1986 -1.3441 39 1 8.7454 2.9700 -1.5852 40 1 11.7499 0.2435 -3.0090 41 1 12.1006 1.6477 -1.9424 42 1 11.7133 1.6397 0.3547 43 1 10.7470 0.4024 1.1949 44 1 6.7859 -2.3170 -2.5750 45 1 8.1431 0.5219 -1.6786 46 1 8.8533 -0.3478 -3.0665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278954334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:50 Heat of formation + Delta-G solvation = 71.035278 kcal Electronic energy + Delta-G solvation = -31113.898083 eV Core-core repulsion = 27010.524670 eV Total energy + Delta-G solvation = -4103.373413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.73140 -40.76080 -38.84907 -37.40676 -33.81213 -33.71037 -33.22854 -32.34805 -30.77195 -30.56790 -28.71280 -27.88996 -26.97051 -25.31140 -23.24976 -23.23781 -22.05684 -20.96906 -19.79527 -19.53493 -18.77985 -17.77049 -17.67346 -17.13575 -16.57596 -16.32529 -15.70867 -15.22594 -15.05225 -14.57641 -14.14599 -13.84468 -13.79876 -13.61285 -13.41577 -13.31281 -12.69771 -12.62594 -12.51420 -12.36637 -12.25700 -11.93475 -11.75295 -11.67597 -11.49999 -11.22955 -10.94725 -10.91566 -10.87109 -10.67173 -10.16080 -9.91881 -9.76664 -9.62938 -9.42893 -9.42212 -9.07611 -8.94405 -8.86691 -7.59145 -6.97568 -5.90522 -3.33431 1.52450 2.46706 2.76908 3.21987 3.26300 3.30090 3.35966 3.40777 4.16254 4.31804 4.39637 4.84589 5.05828 5.15075 5.17873 5.20467 5.21286 5.23377 5.41075 5.47967 5.50389 5.54778 5.59599 5.67780 5.75974 5.85566 5.89989 5.91146 5.95393 6.09063 6.12682 6.24875 6.25079 6.41571 6.57984 6.67535 6.77721 6.85287 6.89628 7.25567 7.36727 7.44063 7.55241 7.74482 8.07674 8.43663 8.49506 8.96466 9.09541 9.57527 10.25947 11.13031 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.004484 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.306664 B = 6242.856951 C = 7730.818123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.021 4.021 3 C -0.234 4.234 4 C 0.215 3.785 5 O -0.261 6.261 6 C 0.043 3.957 7 C 0.511 3.489 8 O -0.555 6.555 9 N -0.688 5.688 10 C 0.164 3.836 11 H 0.063 0.937 12 C -0.124 4.124 13 C -0.119 4.119 14 H 0.075 0.925 15 C -0.126 4.126 16 C 0.150 3.850 17 H 0.067 0.933 18 C -0.140 4.140 19 N -0.595 5.595 20 C -0.258 4.258 21 H 0.082 0.918 22 C 0.003 3.997 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.282 1.282 26 H -0.287 1.287 27 H -0.280 1.280 28 C 0.141 3.859 29 N -0.403 5.403 30 O 0.099 5.901 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.176 0.824 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.437 0.563 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.257 0.743 45 H 0.062 0.938 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.353 5.397 3.673 9.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C -0.256 4.256 4 C 0.017 3.983 5 O -0.165 6.165 6 C -0.035 4.035 7 C 0.296 3.704 8 O -0.435 6.435 9 N -0.355 5.355 10 C 0.058 3.942 11 H 0.081 0.919 12 C -0.162 4.162 13 C -0.138 4.138 14 H 0.093 0.907 15 C -0.165 4.165 16 C 0.042 3.958 17 H 0.085 0.915 18 C -0.181 4.181 19 N -0.321 5.321 20 C -0.385 4.385 21 H 0.100 0.900 22 C -0.196 4.196 23 N -0.547 5.547 24 Si 0.730 3.270 25 H -0.209 1.209 26 H -0.213 1.213 27 H -0.205 1.205 28 C 0.017 3.983 29 N -0.130 5.130 30 O 0.038 5.962 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.194 0.806 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.293 0.707 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.708 5.266 3.624 8.570 hybrid contribution -0.440 -0.667 0.267 0.842 sum -6.148 4.600 3.891 8.608 Atomic orbital electron populations 1.20322 0.83839 1.04677 1.04073 1.24311 0.96386 0.85968 1.01805 1.21730 0.88478 1.01452 1.13961 1.22100 0.88729 0.87878 0.99600 1.86209 1.10239 1.31281 1.88808 1.22647 0.81451 0.93738 1.05667 1.19765 0.84666 0.88383 0.77602 1.90625 1.86412 1.15273 1.51161 1.47446 1.02997 1.14676 1.70425 1.20638 0.85375 0.91337 0.96801 0.91934 1.22072 1.01703 0.97332 0.95122 1.22787 0.96590 0.97178 0.97288 0.90710 1.23198 0.96138 0.98663 0.98456 1.21888 0.89712 0.92179 0.92004 0.91468 1.22499 0.95990 0.98921 1.00649 1.44958 1.15008 1.19696 1.52459 1.19117 1.06265 0.96740 1.16396 0.89996 1.24881 0.98744 0.98631 0.97385 1.69988 1.19710 1.41168 1.23841 0.86313 0.79010 0.82806 0.78890 1.20884 1.21296 1.20532 1.22133 0.93906 0.87301 0.94953 1.74294 0.97255 1.14440 1.26979 1.84831 1.10466 1.31947 1.68920 0.89798 0.89168 0.89117 0.80649 0.86698 0.89711 0.70750 0.92270 0.91154 0.91815 0.92312 0.91457 0.91851 0.93226 0.92042 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.45 36.00 0.38 -0.10 16 2 C -0.02 -0.25 7.48 -35.37 -0.26 -0.52 16 3 C -0.23 -3.30 11.11 -39.22 -0.44 -3.74 16 4 C 0.22 4.02 8.01 -16.66 -0.13 3.89 16 5 O -0.26 -5.47 9.74 -38.74 -0.38 -5.84 16 6 C 0.04 0.93 6.11 36.00 0.22 1.15 16 7 C 0.51 11.32 6.18 -10.98 -0.07 11.26 16 8 O -0.55 -13.23 15.25 -14.35 -0.22 -13.45 16 9 N -0.69 -14.43 2.77 -53.80 -0.15 -14.58 16 10 C 0.16 3.02 2.72 -67.92 -0.18 2.84 16 11 H 0.06 1.14 8.02 -51.93 -0.42 0.73 16 12 C -0.12 -2.23 5.16 -26.21 -0.14 -2.36 16 13 C -0.12 -2.25 4.27 -87.93 -0.38 -2.62 16 14 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 15 C -0.13 -2.15 6.31 -23.49 -0.15 -2.30 16 16 C 0.15 2.78 4.28 -64.74 -0.28 2.51 16 17 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 18 C -0.14 -2.33 5.45 -26.28 -0.14 -2.47 16 19 N -0.59 -13.35 1.83 -160.38 -0.29 -13.64 16 20 C -0.26 -6.31 8.51 -15.06 -0.13 -6.44 16 21 H 0.08 1.96 7.84 -52.49 -0.41 1.55 16 22 C 0.00 0.07 5.39 -17.43 -0.09 -0.03 16 23 N -0.90 -23.93 10.33 55.49 0.57 -23.36 16 24 Si 0.90 20.78 29.56 -169.99 -5.02 15.76 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 C 0.14 3.22 3.99 -2.82 -0.01 3.20 16 29 N -0.40 -7.72 11.54 30.38 0.35 -7.37 16 30 O 0.10 1.58 11.19 17.06 0.19 1.77 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.18 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.12 2.70 7.86 -51.92 -0.41 2.29 16 36 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 37 H 0.44 9.76 3.93 -40.82 -0.16 9.60 16 38 H 0.06 0.91 8.01 -51.93 -0.42 0.50 16 39 H 0.07 1.41 6.84 -51.93 -0.36 1.06 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 0.85 7.83 -51.93 -0.41 0.44 16 42 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 45 H 0.06 1.49 3.73 -61.46 -0.23 1.26 16 46 H 0.06 1.51 6.80 -51.93 -0.35 1.16 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -30.09 359.32 -7.85 -37.94 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -6.51 Total: 13.08 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -1.80 Total: 4.27 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 0.48 Total: -58.95 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.41 Total: -17.52 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.09 -7.85 -37.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278954334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.975 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds