Wall clock time and date at job start Tue Mar 31 2020 19:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35275 * 126.70876 * 2 1 4 4 C 1.41936 * 103.95634 * 180.10967 * 3 2 1 5 5 O 1.35710 * 126.87549 * 179.91111 * 4 3 2 6 6 C 1.42896 * 116.99905 * 179.70890 * 5 4 3 7 7 C 1.50698 * 109.47114 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00300 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00083 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00214 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.17670 * 49.69813 * 10 9 7 12 12 C 1.53032 * 109.32250 * 290.14617 * 10 9 7 13 13 C 1.53964 * 108.83413 * 295.13926 * 12 10 9 14 14 H 1.08994 * 112.99902 * 168.09815 * 13 12 10 15 15 C 1.55433 * 107.19928 * 293.48909 * 13 12 10 16 16 C 1.56614 * 99.71847 * 72.68944 * 15 13 12 17 17 H 1.08998 * 112.20750 * 163.88606 * 16 15 13 18 18 C 1.52977 * 109.32503 * 169.25788 * 10 9 7 19 19 N 1.47928 * 103.52132 * 42.25280 * 16 15 13 20 20 C 1.36939 * 125.92223 * 153.05208 * 19 16 15 21 21 H 1.08002 * 119.99303 * 6.27743 * 20 19 16 22 22 C 1.38804 * 120.00260 * 186.27571 * 20 19 16 23 23 N 1.31619 * 120.00143 * 7.27541 * 22 20 19 24 24 Si 1.86800 * 119.99961 * 187.27733 * 22 20 19 25 25 H 1.48496 * 109.47457 * 84.99282 * 24 22 20 26 26 H 1.48505 * 109.47474 * 204.99213 * 24 22 20 27 27 H 1.48502 * 109.47353 * 324.99146 * 24 22 20 28 28 C 1.47089 * 108.20758 * 331.60761 * 19 16 15 29 29 N 1.30610 * 106.24505 * 359.65130 * 4 3 2 30 30 O 1.20920 * 111.49870 * 0.22312 * 29 4 3 31 31 H 1.08996 * 109.47476 * 180.30543 * 1 2 3 32 32 H 1.08998 * 109.47396 * 300.31007 * 1 2 3 33 33 H 1.09004 * 109.47149 * 60.30766 * 1 2 3 34 34 H 1.07996 * 128.02185 * 359.97438 * 3 2 1 35 35 H 1.09008 * 109.46904 * 60.00335 * 6 5 4 36 36 H 1.08992 * 109.47220 * 300.00022 * 6 5 4 37 37 H 0.96996 * 119.99725 * 0.02562 * 9 7 6 38 38 H 1.08999 * 109.57603 * 175.33396 * 12 10 9 39 39 H 1.09002 * 109.68646 * 55.01368 * 12 10 9 40 40 H 1.08998 * 111.23490 * 191.43246 * 15 13 12 41 41 H 1.09001 * 111.23614 * 315.88142 * 15 13 12 42 42 H 1.09004 * 109.53229 * 185.06340 * 18 10 9 43 43 H 1.08997 * 109.53465 * 305.21395 * 18 10 9 44 44 H 0.97003 * 119.99860 * 179.97438 * 23 22 20 45 45 H 1.08997 * 109.97550 * 243.14603 * 28 19 16 46 46 H 1.08997 * 109.97487 * 121.90729 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6245 0.5355 -0.0026 5 8 4.7953 1.2217 -0.0053 6 6 5.9988 0.4512 -0.0012 7 6 7.1879 1.3770 -0.0044 8 8 7.0213 2.5782 -0.0092 9 7 8.4367 0.8699 -0.0019 10 6 9.5927 1.7698 -0.0055 11 1 9.4660 2.5186 0.7763 12 6 9.6871 2.4674 -1.3643 13 6 9.9743 1.4108 -2.4467 14 1 9.8520 1.7944 -3.4595 15 6 11.3971 0.8477 -2.1732 16 6 11.1004 -0.0129 -0.8988 17 1 11.8978 -0.7254 -0.6880 18 6 10.8633 0.9628 0.2673 19 7 9.8173 -0.6754 -1.2199 20 6 9.3840 -1.8735 -0.7178 21 1 9.9512 -2.3722 0.0542 22 6 8.2160 -2.4469 -1.2011 23 7 7.6019 -1.9160 -2.2371 24 14 7.5156 -3.9722 -0.3810 25 1 6.6724 -3.5705 0.7734 26 1 6.6897 -4.7251 -1.3589 27 1 8.6279 -4.8336 0.0945 28 6 9.0712 0.1915 -2.1448 29 7 3.4765 -0.7621 0.0037 30 8 2.3084 -1.0749 0.0053 31 1 -0.3634 -1.0276 0.0055 32 1 -0.3634 0.5186 0.8872 33 1 -0.3634 0.5091 -0.8928 34 1 2.0312 2.1263 -0.0004 35 1 6.0281 -0.1815 -0.8883 36 1 6.0273 -0.1732 0.8916 37 1 8.5700 -0.0908 0.0016 38 1 10.4952 3.1986 -1.3441 39 1 8.7454 2.9700 -1.5852 40 1 11.7499 0.2435 -3.0090 41 1 12.1006 1.6477 -1.9424 42 1 11.7133 1.6397 0.3547 43 1 10.7470 0.4024 1.1949 44 1 6.7859 -2.3170 -2.5750 45 1 8.1431 0.5219 -1.6786 46 1 8.8533 -0.3478 -3.0665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278954334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:49 Heat of formation + Delta-G solvation = 52.504919 kcal Electronic energy + Delta-G solvation = -31114.701620 eV Core-core repulsion = 27010.524670 eV Total energy + Delta-G solvation = -4104.176950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.02468 -42.36827 -40.43392 -39.05857 -35.53479 -34.89548 -34.81273 -33.62238 -32.46586 -32.14321 -30.33367 -28.98117 -28.37200 -27.06167 -24.90916 -24.54539 -23.50322 -22.33162 -21.46649 -21.17345 -20.32591 -19.16176 -19.01538 -18.80573 -17.98712 -17.91869 -17.33591 -16.81576 -16.75405 -16.33482 -15.71141 -15.31157 -15.22543 -14.95581 -14.43804 -14.35516 -14.15979 -13.95660 -13.93118 -13.86935 -13.44996 -13.36142 -13.24760 -13.16922 -13.07495 -12.88643 -12.78069 -12.64261 -12.28361 -12.13189 -11.95222 -11.68795 -11.40799 -11.11865 -10.99295 -10.80178 -10.71185 -10.53742 -10.32207 -9.27390 -8.82763 -7.85551 -5.27092 0.43224 1.15394 1.28597 1.41265 1.45029 1.50608 1.51647 2.22537 2.42629 2.64497 3.10962 3.27198 3.58139 3.72755 3.77698 3.84118 3.85833 3.94096 3.97493 4.03243 4.12900 4.31313 4.35809 4.40162 4.42868 4.64888 4.75480 4.76575 4.78032 4.84133 4.87525 4.89483 5.05024 5.12736 5.23947 5.24925 5.30378 5.37762 5.47807 5.56041 5.70623 5.73461 5.82158 5.86293 6.17761 6.73940 7.05175 7.23572 7.33244 7.72634 8.39056 9.15641 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.004484 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.306664 B = 6242.856951 C = 7730.818123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.004 3.996 3 C -0.243 4.243 4 C 0.179 3.821 5 O -0.276 6.276 6 C 0.056 3.944 7 C 0.509 3.491 8 O -0.576 6.576 9 N -0.685 5.685 10 C 0.152 3.848 11 H 0.069 0.931 12 C -0.115 4.115 13 C -0.117 4.117 14 H 0.080 0.920 15 C -0.112 4.112 16 C 0.139 3.861 17 H 0.077 0.923 18 C -0.128 4.128 19 N -0.606 5.606 20 C -0.249 4.249 21 H 0.089 0.911 22 C -0.039 4.039 23 N -0.924 5.924 24 Si 0.944 3.056 25 H -0.289 1.289 26 H -0.303 1.303 27 H -0.266 1.266 28 C 0.146 3.854 29 N -0.442 5.442 30 O 0.093 5.907 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.204 0.796 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.431 0.569 38 H 0.098 0.902 39 H 0.043 0.957 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.062 0.938 44 H 0.243 0.757 45 H 0.043 0.957 46 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.740 6.675 4.719 9.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.060 4.060 3 C -0.265 4.265 4 C -0.018 4.018 5 O -0.181 6.181 6 C -0.022 4.022 7 C 0.293 3.707 8 O -0.457 6.457 9 N -0.351 5.351 10 C 0.048 3.952 11 H 0.087 0.913 12 C -0.153 4.153 13 C -0.136 4.136 14 H 0.098 0.902 15 C -0.150 4.150 16 C 0.033 3.967 17 H 0.095 0.905 18 C -0.168 4.168 19 N -0.332 5.332 20 C -0.378 4.378 21 H 0.107 0.893 22 C -0.235 4.235 23 N -0.571 5.571 24 Si 0.774 3.226 25 H -0.216 1.216 26 H -0.230 1.230 27 H -0.191 1.191 28 C 0.021 3.979 29 N -0.169 5.169 30 O 0.032 5.968 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.221 0.779 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.285 0.715 38 H 0.116 0.884 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -5.045 6.541 4.691 9.500 hybrid contribution -0.723 -1.080 -0.064 1.301 sum -5.768 5.461 4.627 9.193 Atomic orbital electron populations 1.20691 0.79187 1.06426 1.06363 1.25353 0.98382 0.84033 0.98224 1.22160 0.86378 1.03371 1.14558 1.22712 0.89220 0.88601 1.01281 1.86161 1.10742 1.31806 1.89437 1.22372 0.82230 0.93440 1.04197 1.19846 0.85203 0.88093 0.77512 1.90589 1.86736 1.15891 1.52526 1.47559 1.03434 1.14734 1.69326 1.20986 0.85303 0.91515 0.97397 0.91270 1.22004 1.01776 0.97390 0.94136 1.22744 0.97092 0.95712 0.98077 0.90160 1.23161 0.95343 0.99203 0.97289 1.22207 0.87999 0.92822 0.93673 0.90512 1.22427 0.96221 0.98813 0.99326 1.45107 1.16695 1.19242 1.52180 1.19379 1.05711 0.97068 1.15625 0.89276 1.25346 0.99562 1.00557 0.98084 1.70179 1.19539 1.42021 1.25317 0.85611 0.78440 0.81051 0.77536 1.21615 1.22992 1.19081 1.21914 0.94649 0.88495 0.92801 1.74281 0.99111 1.15161 1.28313 1.84764 1.09967 1.33302 1.68743 0.88378 0.86483 0.86773 0.77914 0.89336 0.89913 0.71526 0.88367 0.93855 0.92450 0.88185 0.87111 0.91957 0.94684 0.93973 0.97049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.45 71.23 0.74 0.07 16 2 C 0.00 0.09 7.48 25.00 0.19 0.27 16 3 C -0.24 -6.75 11.11 22.50 0.25 -6.50 16 4 C 0.18 6.99 8.01 85.79 0.69 7.68 16 5 O -0.28 -12.27 9.74 -71.27 -0.69 -12.96 16 6 C 0.06 2.59 6.11 71.24 0.44 3.03 16 7 C 0.51 23.43 6.18 87.66 0.54 23.97 16 8 O -0.58 -28.19 15.25 16.01 0.24 -27.95 16 9 N -0.68 -29.09 2.77 -442.52 -1.23 -30.32 16 10 C 0.15 5.32 2.72 44.99 0.12 5.45 16 11 H 0.07 2.37 8.02 -2.39 -0.02 2.35 16 12 C -0.11 -3.88 5.16 30.93 0.16 -3.72 16 13 C -0.12 -4.26 4.27 -9.05 -0.04 -4.30 16 14 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 15 C -0.11 -3.43 6.31 32.69 0.21 -3.22 16 16 C 0.14 4.78 4.28 46.28 0.20 4.98 16 17 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 18 C -0.13 -3.78 5.45 30.88 0.17 -3.61 16 19 N -0.61 -27.09 1.83 -661.32 -1.21 -28.29 16 20 C -0.25 -12.31 8.51 84.03 0.72 -11.59 16 21 H 0.09 4.21 7.84 -2.91 -0.02 4.18 16 22 C -0.04 -2.05 5.39 84.86 0.46 -1.60 16 23 N -0.92 -51.81 10.33 21.65 0.22 -51.59 16 24 Si 0.94 44.10 29.56 68.60 2.03 46.13 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 26 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 C 0.15 6.82 3.99 86.85 0.35 7.17 16 29 N -0.44 -17.82 11.54 -172.60 -1.99 -19.82 16 30 O 0.09 3.01 11.19 71.22 0.80 3.81 16 31 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.20 4.26 8.06 -2.91 -0.02 4.23 16 35 H 0.09 4.54 7.86 -2.38 -0.02 4.52 16 36 H 0.08 3.71 8.14 -2.39 -0.02 3.69 16 37 H 0.43 19.61 3.93 -92.71 -0.36 19.24 16 38 H 0.10 2.58 8.01 -2.39 -0.02 2.56 16 39 H 0.04 1.71 6.84 -2.39 -0.02 1.69 16 40 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 41 H 0.10 2.30 7.83 -2.39 -0.02 2.28 16 42 H 0.11 2.39 8.04 -2.38 -0.02 2.37 16 43 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.24 13.92 8.31 -92.71 -0.77 13.15 16 45 H 0.04 2.15 3.73 -21.20 -0.08 2.07 16 46 H 0.01 0.63 6.80 -2.39 -0.02 0.61 16 Total: -1.00 -70.94 359.32 3.93 -67.01 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: 0.58 Total: 35.90 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 5.18 Total: 18.08 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -4.20 Total: -130.02 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: 0.35 Total: -37.10 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -70.94 3.93 -67.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278954334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.512 kcal (2) G-P(sol) polarization free energy of solvation -70.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds