Wall clock time and date at job start Tue Mar 31 2020 19:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34860 * 119.10057 * 2 1 4 4 C 1.41671 * 119.34041 * 179.69577 * 3 2 1 5 5 O 1.22082 * 121.07250 * 180.29167 * 4 3 2 6 6 C 1.47103 * 117.86374 * 0.53556 * 4 3 2 7 7 C 1.47287 * 120.88301 * 179.77782 * 6 4 3 8 8 O 1.21615 * 119.99909 * 359.72528 * 7 6 4 9 9 N 1.34774 * 119.99753 * 179.71528 * 7 6 4 10 10 C 1.46503 * 119.99836 * 174.68805 * 9 7 6 11 11 C 1.52996 * 109.49893 * 302.54029 * 10 9 7 12 12 O 1.42900 * 109.47398 * 302.19392 * 11 10 9 13 13 C 1.53042 * 109.49532 * 62.63664 * 10 9 7 14 14 C 1.53041 * 109.53683 * 58.58715 * 13 10 9 15 15 C 1.53191 * 109.31667 * 61.36198 * 14 13 10 16 16 N 1.46924 * 108.77522 * 305.36865 * 15 14 13 17 17 C 1.36940 * 120.63049 * 233.88085 * 16 15 14 18 18 H 1.07997 * 120.00197 * 149.27946 * 17 16 15 19 19 C 1.38818 * 119.99740 * 329.27707 * 17 16 15 20 20 N 1.31615 * 119.99998 * 161.27831 * 19 17 16 21 21 Si 1.86803 * 119.99921 * 341.28087 * 19 17 16 22 22 H 1.48500 * 109.47295 * 92.62476 * 21 19 17 23 23 H 1.48502 * 109.46795 * 212.62053 * 21 19 17 24 24 H 1.48492 * 109.47119 * 332.62162 * 21 19 17 25 25 C 1.46926 * 118.74208 * 53.60647 * 16 15 14 26 26 C 1.37995 * 118.23040 * 359.50827 * 6 4 3 27 27 N 1.34342 * 120.37504 * 0.23104 * 26 6 4 28 28 H 0.96994 * 118.80793 * 180.02562 * 27 26 6 29 29 H 1.09006 * 109.47154 * 269.98563 * 1 2 3 30 30 H 1.09003 * 109.47069 * 29.98070 * 1 2 3 31 31 H 1.08997 * 109.47210 * 149.98318 * 1 2 3 32 32 H 1.08002 * 120.32950 * 359.97438 * 3 2 1 33 33 H 0.97000 * 120.00216 * 354.69918 * 9 7 6 34 34 H 1.08999 * 109.47269 * 62.20087 * 11 10 9 35 35 H 1.09004 * 109.46701 * 182.19913 * 11 10 9 36 36 H 0.96698 * 114.00613 * 179.97438 * 12 11 10 37 37 H 1.08997 * 109.46102 * 178.60122 * 13 10 9 38 38 H 1.08997 * 109.45980 * 298.56690 * 13 10 9 39 39 H 1.09005 * 109.49986 * 181.31772 * 14 13 10 40 40 H 1.09003 * 109.49634 * 301.41192 * 14 13 10 41 41 H 1.09005 * 109.59161 * 185.57744 * 15 14 13 42 42 H 1.09005 * 109.58234 * 65.15204 * 15 14 13 43 43 H 0.96998 * 120.00163 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.58331 * 66.17804 * 25 16 15 45 45 H 1.09001 * 109.58914 * 186.46144 * 25 16 15 46 46 H 1.08005 * 119.80881 * 180.25152 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1843 0.0066 5 8 4.2052 2.2326 0.0121 6 6 4.2725 -0.1133 0.0010 7 6 5.7437 -0.1846 0.0024 8 8 6.4021 0.8379 0.0031 9 7 6.3601 -1.3831 0.0030 10 6 7.8187 -1.4567 -0.1131 11 6 8.2643 -0.7597 -1.4002 12 8 7.6243 -1.3737 -2.5206 13 6 8.4624 -0.7663 1.0916 14 6 7.9907 -1.4423 2.3811 15 6 8.4293 -2.9100 2.3735 16 7 7.9355 -3.5448 1.1440 17 6 7.1864 -4.6897 1.2022 18 1 6.4387 -4.8848 0.4478 19 6 7.3883 -5.5996 2.2310 20 7 6.4616 -6.4907 2.5127 21 14 8.9752 -5.5591 3.2157 22 1 8.7912 -4.7048 4.4163 23 1 9.3304 -6.9376 3.6388 24 1 10.0655 -5.0030 2.3748 25 6 8.2554 -2.9246 -0.1490 26 6 3.5076 -1.2618 0.0001 27 7 2.1664 -1.1847 -0.0004 28 1 1.6510 -2.0064 -0.0006 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6136 2.1083 -0.0004 33 1 5.8381 -2.1970 0.0801 34 1 7.9889 0.2940 -1.3569 35 1 9.3456 -0.8486 -1.5058 36 1 7.8606 -0.9815 -3.3723 37 1 9.5471 -0.8430 1.0173 38 1 8.1729 0.2844 1.1055 39 1 8.4311 -0.9353 3.2397 40 1 6.9039 -1.3877 2.4439 41 1 8.0120 -3.4207 3.2415 42 1 9.5176 -2.9663 2.4021 43 1 6.6027 -7.1267 3.2313 44 1 9.3294 -2.9821 -0.3260 45 1 7.7253 -3.4464 -0.9457 46 1 3.9900 -2.2281 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279518702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:30 Heat of formation + Delta-G solvation = -58.005026 kcal Electronic energy + Delta-G solvation = -30718.053004 eV Core-core repulsion = 26609.083984 eV Total energy + Delta-G solvation = -4108.969021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.02311 -39.80129 -37.82425 -37.05270 -36.11897 -33.89837 -33.52603 -32.33906 -31.38180 -30.84630 -29.98012 -28.00995 -25.73032 -25.15408 -24.15174 -22.44740 -22.03863 -21.59079 -20.75240 -18.83455 -18.73401 -17.34552 -16.96616 -16.77654 -16.36543 -16.07265 -15.44710 -15.30769 -15.12388 -14.67806 -14.50224 -13.99937 -13.79669 -13.69661 -13.36798 -13.34938 -13.21770 -13.06897 -12.99458 -12.81042 -12.69336 -12.33200 -12.24729 -12.14599 -11.67825 -11.49800 -11.33898 -10.76408 -10.61349 -10.23138 -9.98951 -9.83417 -9.71121 -9.56873 -9.50998 -9.39193 -8.90625 -8.61899 -8.43313 -8.03826 -6.98786 -6.04322 -3.42925 0.87437 1.29059 2.59098 3.27302 3.29914 3.45354 3.49230 3.59408 4.05687 4.07697 4.46377 4.47868 4.50484 4.62728 4.87042 4.92394 4.98130 5.02027 5.23743 5.30034 5.36243 5.45328 5.50942 5.60033 5.64955 5.69523 5.79748 5.83665 5.93796 6.16576 6.22062 6.29100 6.34044 6.37027 6.50542 6.61755 6.64552 6.66971 6.73199 6.81021 6.94160 7.15487 7.86841 7.91321 8.14775 8.23009 8.25092 8.83037 8.87134 9.63974 10.04140 11.11331 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012251 B = 0.004298 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.894101 B = 6513.802489 C = 7722.311743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.155 3.845 3 C -0.275 4.275 4 C 0.409 3.591 5 O -0.485 6.485 6 C -0.297 4.297 7 C 0.575 3.425 8 O -0.525 6.525 9 N -0.697 5.697 10 C 0.170 3.830 11 C 0.065 3.935 12 O -0.565 6.565 13 C -0.123 4.123 14 C -0.127 4.127 15 C 0.125 3.875 16 N -0.605 5.605 17 C -0.263 4.263 18 H 0.084 0.916 19 C 0.029 3.971 20 N -0.909 5.909 21 Si 0.885 3.115 22 H -0.288 1.288 23 H -0.304 1.304 24 H -0.270 1.270 25 C 0.151 3.849 26 C 0.177 3.823 27 N -0.578 5.578 28 H 0.422 0.578 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.149 0.851 33 H 0.400 0.600 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.371 0.629 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.025 0.975 43 H 0.263 0.737 44 H 0.036 0.964 45 H 0.076 0.924 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.231 9.093 -6.875 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 C -0.300 4.300 4 C 0.295 3.705 5 O -0.366 6.366 6 C -0.307 4.307 7 C 0.362 3.638 8 O -0.402 6.402 9 N -0.349 5.349 10 C 0.082 3.918 11 C -0.014 4.014 12 O -0.369 6.369 13 C -0.161 4.161 14 C -0.167 4.167 15 C 0.000 4.000 16 N -0.329 5.329 17 C -0.391 4.391 18 H 0.101 0.899 19 C -0.171 4.171 20 N -0.552 5.552 21 Si 0.716 3.284 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.195 1.195 25 C 0.024 3.976 26 C 0.045 3.955 27 N -0.184 5.184 28 H 0.258 0.742 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.167 0.833 33 H 0.236 0.764 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.216 0.784 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.094 0.906 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.717 9.875 -6.314 15.225 hybrid contribution 0.653 -0.728 0.342 1.036 sum -9.064 9.147 -5.972 14.194 Atomic orbital electron populations 1.21092 0.88060 1.04762 1.04328 1.20279 0.94724 0.85644 0.94545 1.22237 0.96424 0.97165 1.14136 1.18150 0.88159 0.87972 0.76175 1.90796 1.69997 1.33289 1.42499 1.22597 0.94924 0.94826 1.18388 1.17402 0.85874 0.83762 0.76737 1.90727 1.65574 1.34353 1.49584 1.45703 1.07237 1.07757 1.74163 1.20849 0.80133 0.98413 0.92375 1.22633 0.95258 0.97590 0.85950 1.86486 1.71892 1.61919 1.16599 1.21786 0.99306 1.00850 0.94193 1.21900 1.01498 0.97195 0.96064 1.21376 0.96326 0.91855 0.90492 1.44363 1.62145 1.27073 0.99304 1.18830 1.12502 0.95167 1.12588 0.89877 1.25315 0.97441 0.95818 0.98480 1.69793 1.32699 1.21357 1.31328 0.86897 0.86168 0.75511 0.79869 1.21601 1.23248 1.19483 1.21130 0.97953 0.89152 0.89334 1.22407 0.82453 1.00527 0.90063 1.40745 1.06079 1.08940 1.62610 0.74193 0.89253 0.88902 0.90440 0.83341 0.76378 0.91576 0.93569 0.78390 0.92052 0.90229 0.92820 0.91855 0.91145 0.95753 0.92756 0.94624 0.90589 0.80905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.47 10.03 36.00 0.36 -0.11 16 2 C 0.16 1.24 6.79 -82.13 -0.56 0.69 16 3 C -0.28 -3.25 9.57 -39.47 -0.38 -3.63 16 4 C 0.41 6.97 6.96 -34.68 -0.24 6.73 16 5 O -0.48 -10.50 16.41 -15.17 -0.25 -10.75 16 6 C -0.30 -4.68 6.05 -102.71 -0.62 -5.30 16 7 C 0.58 10.63 7.18 -12.58 -0.09 10.54 16 8 O -0.53 -11.43 11.85 -14.75 -0.17 -11.61 16 9 N -0.70 -11.98 3.95 -48.60 -0.19 -12.17 16 10 C 0.17 2.98 0.45 -131.70 -0.06 2.92 16 11 C 0.06 1.02 5.66 37.16 0.21 1.23 16 12 O -0.56 -8.37 13.02 -35.23 -0.46 -8.83 16 13 C -0.12 -2.19 4.51 -26.69 -0.12 -2.31 16 14 C -0.13 -2.40 5.93 -26.61 -0.16 -2.56 16 15 C 0.12 2.67 4.20 -3.71 -0.02 2.66 16 16 N -0.61 -13.46 2.59 -172.31 -0.45 -13.91 16 17 C -0.26 -6.73 10.01 -15.06 -0.15 -6.88 16 18 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 19 C 0.03 0.79 5.24 -17.43 -0.09 0.70 16 20 N -0.91 -26.20 13.97 55.49 0.78 -25.42 16 21 Si 0.89 21.81 24.37 -169.99 -4.14 17.67 16 22 H -0.29 -6.95 6.67 56.52 0.38 -6.58 16 23 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 24 H -0.27 -6.59 6.64 56.52 0.38 -6.22 16 25 C 0.15 2.91 5.03 -3.71 -0.02 2.89 16 26 C 0.18 1.95 10.73 -16.54 -0.18 1.77 16 27 N -0.58 -4.35 5.16 -9.00 -0.05 -4.39 16 28 H 0.42 1.62 8.70 -40.82 -0.35 1.26 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.29 8.05 -51.93 -0.42 -0.13 16 31 H 0.08 0.16 8.12 -51.93 -0.42 -0.26 16 32 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.40 6.67 6.52 -40.82 -0.27 6.41 16 34 H 0.07 1.15 6.24 -51.93 -0.32 0.83 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.37 3.81 9.12 45.56 0.42 4.23 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.52 6.22 -51.93 -0.32 1.19 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.26 7.53 -51.93 -0.39 0.87 16 41 H 0.07 1.64 4.78 -51.93 -0.25 1.40 16 42 H 0.02 0.52 7.03 -51.93 -0.36 0.16 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 1.50 7.71 -51.93 -0.40 1.10 16 46 H 0.17 1.68 6.44 -52.48 -0.34 1.34 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -37.88 361.69 -7.17 -45.06 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -5.58 Total: 9.58 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -2.11 Total: 9.32 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.09 Total: -55.89 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.88 Total: -31.19 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.14 Total: 17.67 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.88 -7.17 -45.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279518702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.950 kcal (2) G-P(sol) polarization free energy of solvation -37.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds