Wall clock time and date at job start Tue Mar 31 2020 19:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34860 * 119.10057 * 2 1 4 4 C 1.41671 * 119.34041 * 179.69577 * 3 2 1 5 5 O 1.22082 * 121.07250 * 180.29167 * 4 3 2 6 6 C 1.47103 * 117.86374 * 0.53556 * 4 3 2 7 7 C 1.47287 * 120.88301 * 179.77782 * 6 4 3 8 8 O 1.21615 * 119.99909 * 359.72528 * 7 6 4 9 9 N 1.34774 * 119.99753 * 179.71528 * 7 6 4 10 10 C 1.46503 * 119.99836 * 174.68805 * 9 7 6 11 11 C 1.52996 * 109.49893 * 302.54029 * 10 9 7 12 12 O 1.42900 * 109.47398 * 302.19392 * 11 10 9 13 13 C 1.53042 * 109.49532 * 62.63664 * 10 9 7 14 14 C 1.53041 * 109.53683 * 58.58715 * 13 10 9 15 15 C 1.53191 * 109.31667 * 61.36198 * 14 13 10 16 16 N 1.46924 * 108.77522 * 305.36865 * 15 14 13 17 17 C 1.36940 * 120.63049 * 233.88085 * 16 15 14 18 18 H 1.07997 * 120.00197 * 149.27946 * 17 16 15 19 19 C 1.38818 * 119.99740 * 329.27707 * 17 16 15 20 20 N 1.31615 * 119.99998 * 161.27831 * 19 17 16 21 21 Si 1.86803 * 119.99921 * 341.28087 * 19 17 16 22 22 H 1.48500 * 109.47295 * 92.62476 * 21 19 17 23 23 H 1.48502 * 109.46795 * 212.62053 * 21 19 17 24 24 H 1.48492 * 109.47119 * 332.62162 * 21 19 17 25 25 C 1.46926 * 118.74208 * 53.60647 * 16 15 14 26 26 C 1.37995 * 118.23040 * 359.50827 * 6 4 3 27 27 N 1.34342 * 120.37504 * 0.23104 * 26 6 4 28 28 H 0.96994 * 118.80793 * 180.02562 * 27 26 6 29 29 H 1.09006 * 109.47154 * 269.98563 * 1 2 3 30 30 H 1.09003 * 109.47069 * 29.98070 * 1 2 3 31 31 H 1.08997 * 109.47210 * 149.98318 * 1 2 3 32 32 H 1.08002 * 120.32950 * 359.97438 * 3 2 1 33 33 H 0.97000 * 120.00216 * 354.69918 * 9 7 6 34 34 H 1.08999 * 109.47269 * 62.20087 * 11 10 9 35 35 H 1.09004 * 109.46701 * 182.19913 * 11 10 9 36 36 H 0.96698 * 114.00613 * 179.97438 * 12 11 10 37 37 H 1.08997 * 109.46102 * 178.60122 * 13 10 9 38 38 H 1.08997 * 109.45980 * 298.56690 * 13 10 9 39 39 H 1.09005 * 109.49986 * 181.31772 * 14 13 10 40 40 H 1.09003 * 109.49634 * 301.41192 * 14 13 10 41 41 H 1.09005 * 109.59161 * 185.57744 * 15 14 13 42 42 H 1.09005 * 109.58234 * 65.15204 * 15 14 13 43 43 H 0.96998 * 120.00163 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.58331 * 66.17804 * 25 16 15 45 45 H 1.09001 * 109.58914 * 186.46144 * 25 16 15 46 46 H 1.08005 * 119.80881 * 180.25152 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1843 0.0066 5 8 4.2052 2.2326 0.0121 6 6 4.2725 -0.1133 0.0010 7 6 5.7437 -0.1846 0.0024 8 8 6.4021 0.8379 0.0031 9 7 6.3601 -1.3831 0.0030 10 6 7.8187 -1.4567 -0.1131 11 6 8.2643 -0.7597 -1.4002 12 8 7.6243 -1.3737 -2.5206 13 6 8.4624 -0.7663 1.0916 14 6 7.9907 -1.4423 2.3811 15 6 8.4293 -2.9100 2.3735 16 7 7.9355 -3.5448 1.1440 17 6 7.1864 -4.6897 1.2022 18 1 6.4387 -4.8848 0.4478 19 6 7.3883 -5.5996 2.2310 20 7 6.4616 -6.4907 2.5127 21 14 8.9752 -5.5591 3.2157 22 1 8.7912 -4.7048 4.4163 23 1 9.3304 -6.9376 3.6388 24 1 10.0655 -5.0030 2.3748 25 6 8.2554 -2.9246 -0.1490 26 6 3.5076 -1.2618 0.0001 27 7 2.1664 -1.1847 -0.0004 28 1 1.6510 -2.0064 -0.0006 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6136 2.1083 -0.0004 33 1 5.8381 -2.1970 0.0801 34 1 7.9889 0.2940 -1.3569 35 1 9.3456 -0.8486 -1.5058 36 1 7.8606 -0.9815 -3.3723 37 1 9.5471 -0.8430 1.0173 38 1 8.1729 0.2844 1.1055 39 1 8.4311 -0.9353 3.2397 40 1 6.9039 -1.3877 2.4439 41 1 8.0120 -3.4207 3.2415 42 1 9.5176 -2.9663 2.4021 43 1 6.6027 -7.1267 3.2313 44 1 9.3294 -2.9821 -0.3260 45 1 7.7253 -3.4464 -0.9457 46 1 3.9900 -2.2281 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279518702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:29 Heat of formation + Delta-G solvation = -88.411662 kcal Electronic energy + Delta-G solvation = -30719.371535 eV Core-core repulsion = 26609.083984 eV Total energy + Delta-G solvation = -4110.287551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.07122 -41.12986 -39.12492 -38.46795 -37.43004 -35.44845 -34.60448 -33.79580 -32.77031 -32.46785 -31.28954 -28.76568 -27.38278 -26.76436 -25.15933 -23.82105 -23.47737 -22.85748 -22.18171 -20.25086 -19.83894 -18.69432 -18.38800 -18.16114 -17.54134 -17.16117 -17.14382 -16.58438 -16.43338 -15.88089 -15.70333 -15.55291 -15.30392 -15.07450 -14.97018 -14.49538 -14.43630 -14.31321 -13.94937 -13.91333 -13.70445 -13.67449 -13.39700 -13.28529 -13.22624 -13.02439 -12.93318 -12.50900 -12.19676 -11.96665 -11.66447 -11.45584 -11.37111 -11.11069 -10.76675 -10.58638 -10.43771 -10.17290 -9.83522 -9.14906 -8.85942 -8.12701 -5.46590 -0.15014 0.35661 1.34435 1.45901 1.52982 1.78721 2.01325 2.28400 2.46320 2.85728 3.10641 3.26427 3.35102 3.37249 3.65542 3.73669 3.94728 3.99320 4.00465 4.16505 4.23340 4.27723 4.39063 4.46801 4.56416 4.63772 4.74530 4.77993 4.79360 4.82251 4.83894 4.85568 4.98748 5.02871 5.11526 5.18594 5.27676 5.33091 5.38038 5.71132 5.74918 5.92637 6.07859 6.17496 6.78712 6.90168 6.94359 7.11261 7.48413 7.64419 8.08117 9.05802 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012251 B = 0.004298 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.894101 B = 6513.802489 C = 7722.311743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.190 3.810 3 C -0.305 4.305 4 C 0.389 3.611 5 O -0.562 6.562 6 C -0.348 4.348 7 C 0.572 3.428 8 O -0.567 6.567 9 N -0.692 5.692 10 C 0.169 3.831 11 C 0.074 3.926 12 O -0.576 6.576 13 C -0.118 4.118 14 C -0.119 4.119 15 C 0.124 3.876 16 N -0.612 5.612 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.021 4.021 20 N -0.949 5.949 21 Si 0.932 3.068 22 H -0.283 1.283 23 H -0.315 1.315 24 H -0.263 1.263 25 C 0.157 3.843 26 C 0.217 3.783 27 N -0.551 5.551 28 H 0.447 0.553 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.159 0.841 33 H 0.402 0.598 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.391 0.609 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.032 0.968 43 H 0.259 0.741 44 H 0.048 0.952 45 H 0.071 0.929 46 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.723 8.171 -7.448 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.082 3.918 3 C -0.329 4.329 4 C 0.282 3.718 5 O -0.450 6.450 6 C -0.359 4.359 7 C 0.361 3.639 8 O -0.447 6.447 9 N -0.343 5.343 10 C 0.081 3.919 11 C -0.005 4.005 12 O -0.383 6.383 13 C -0.157 4.157 14 C -0.158 4.158 15 C 0.000 4.000 16 N -0.336 5.336 17 C -0.369 4.369 18 H 0.086 0.914 19 C -0.216 4.216 20 N -0.595 5.595 21 Si 0.762 3.238 22 H -0.210 1.210 23 H -0.245 1.245 24 H -0.188 1.188 25 C 0.031 3.969 26 C 0.082 3.918 27 N -0.158 5.158 28 H 0.289 0.711 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.177 0.823 33 H 0.238 0.762 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.240 0.760 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -11.248 8.926 -6.919 15.940 hybrid contribution 0.935 -0.542 0.436 1.165 sum -10.313 8.385 -6.483 14.788 Atomic orbital electron populations 1.21302 0.83759 1.06872 1.06033 1.20859 0.96939 0.84227 0.89803 1.22141 0.94033 0.99471 1.17207 1.18856 0.90283 0.87540 0.75149 1.90744 1.71646 1.35251 1.47332 1.22378 0.94032 0.96111 1.23330 1.17786 0.87044 0.83251 0.75778 1.90696 1.66738 1.35638 1.51668 1.45640 1.07179 1.07504 1.73971 1.20840 0.80398 0.97264 0.93375 1.22433 0.96387 0.96074 0.85585 1.86425 1.72195 1.62102 1.17534 1.21735 1.00359 0.99815 0.93759 1.21790 1.00642 0.95839 0.97502 1.21368 0.96506 0.92845 0.89325 1.44431 1.61993 1.26374 1.00846 1.18834 1.11506 0.95501 1.11056 0.91369 1.25779 0.99455 0.96282 1.00127 1.69884 1.34173 1.22801 1.32600 0.86130 0.83657 0.74791 0.79204 1.20964 1.24464 1.18799 1.21158 0.98532 0.89638 0.87562 1.22487 0.83608 0.99591 0.86125 1.40982 1.05133 1.10379 1.59268 0.71134 0.87402 0.87759 0.87431 0.82341 0.76215 0.93551 0.91331 0.76019 0.90270 0.91610 0.91073 0.93341 0.93076 0.94966 0.93151 0.93422 0.91036 0.79102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.30 10.03 71.24 0.71 0.41 16 2 C 0.19 2.42 6.79 41.20 0.28 2.70 16 3 C -0.31 -7.05 9.57 22.34 0.21 -6.83 16 4 C 0.39 13.93 6.96 25.45 0.18 14.10 16 5 O -0.56 -26.48 16.41 13.56 0.22 -26.25 16 6 C -0.35 -11.18 6.05 -18.63 -0.11 -11.29 16 7 C 0.57 21.82 7.18 86.62 0.62 22.44 16 8 O -0.57 -26.07 11.85 15.06 0.18 -25.89 16 9 N -0.69 -23.70 3.95 -425.92 -1.68 -25.38 16 10 C 0.17 5.78 0.45 3.68 0.00 5.78 16 11 C 0.07 2.28 5.66 71.98 0.41 2.69 16 12 O -0.58 -16.29 13.02 -148.98 -1.94 -18.23 16 13 C -0.12 -4.11 4.51 30.62 0.14 -3.97 16 14 C -0.12 -4.36 5.93 30.67 0.18 -4.18 16 15 C 0.12 5.14 4.20 86.36 0.36 5.50 16 16 N -0.61 -26.40 2.59 -699.08 -1.81 -28.21 16 17 C -0.24 -12.10 10.01 84.03 0.84 -11.25 16 18 H 0.07 3.61 8.06 -2.91 -0.02 3.59 16 19 C -0.02 -1.12 5.24 84.86 0.44 -0.68 16 20 N -0.95 -54.88 13.97 21.65 0.30 -54.57 16 21 Si 0.93 44.51 24.37 68.60 1.67 46.18 16 22 H -0.28 -13.08 6.67 99.48 0.66 -12.42 16 23 H -0.32 -15.55 7.11 99.48 0.71 -14.84 16 24 H -0.26 -12.16 6.64 99.48 0.66 -11.50 16 25 C 0.16 5.76 5.03 86.36 0.43 6.20 16 26 C 0.22 4.36 10.73 84.25 0.90 5.26 16 27 N -0.55 -6.22 5.16 -182.38 -0.94 -7.16 16 28 H 0.45 1.05 8.70 -92.71 -0.81 0.24 16 29 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 30 H 0.10 0.17 8.05 -2.39 -0.02 0.16 16 31 H 0.11 -0.26 8.12 -2.39 -0.02 -0.28 16 32 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 33 H 0.40 13.12 6.52 -92.71 -0.60 12.52 16 34 H 0.05 1.64 6.24 -2.39 -0.01 1.63 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.39 7.44 9.12 -74.06 -0.68 6.76 16 37 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.07 2.53 6.22 -2.39 -0.01 2.52 16 39 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.05 1.91 7.53 -2.39 -0.02 1.90 16 41 H 0.05 2.32 4.78 -2.38 -0.01 2.31 16 42 H 0.03 1.30 7.03 -2.38 -0.02 1.28 16 43 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 44 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.07 2.70 7.71 -2.39 -0.02 2.69 16 46 H 0.19 3.22 6.44 -2.91 -0.02 3.20 16 Total: -1.00 -88.17 361.69 0.49 -87.68 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -1.12 Total: 24.94 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: 5.61 Total: 26.89 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -4.13 Total: -115.32 kcal Atomic # 8 Polarization: -68.84 SS G_CDS: -1.54 Total: -70.38 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.67 Total: 46.18 kcal Total: -88.17 0.49 -87.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279518702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.729 kcal (2) G-P(sol) polarization free energy of solvation -88.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds