Wall clock time and date at job start Tue Mar 31 2020 19:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.34869 * 119.10234 * 2 1 4 4 C 1.41673 * 119.34013 * 179.72505 * 3 2 1 5 5 O 1.22081 * 121.06398 * 180.30159 * 4 3 2 6 6 C 1.47099 * 117.86226 * 0.27799 * 4 3 2 7 7 C 1.47282 * 120.87902 * 180.02562 * 6 4 3 8 8 O 1.21623 * 120.00273 * 0.02562 * 7 6 4 9 9 N 1.34778 * 120.00021 * 179.97438 * 7 6 4 10 10 C 1.46500 * 120.00162 * 174.91362 * 9 7 6 11 11 C 1.53004 * 109.50045 * 59.92941 * 10 9 7 12 12 O 1.42895 * 109.46616 * 54.28151 * 11 10 9 13 13 C 1.53048 * 109.49583 * 299.86784 * 10 9 7 14 14 C 1.53042 * 109.53468 * 301.41581 * 13 10 9 15 15 C 1.53193 * 109.31371 * 298.63008 * 14 13 10 16 16 N 1.46930 * 108.77137 * 54.64057 * 15 14 13 17 17 C 1.36938 * 120.63252 * 126.41499 * 16 15 14 18 18 H 1.08001 * 119.99407 * 330.36318 * 17 16 15 19 19 C 1.38809 * 120.00249 * 150.35738 * 17 16 15 20 20 N 1.31619 * 119.99954 * 341.56383 * 19 17 16 21 21 Si 1.86799 * 119.99985 * 161.55625 * 19 17 16 22 22 H 1.48500 * 109.47064 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47095 * 120.00227 * 21 19 17 24 24 H 1.48497 * 109.47234 * 240.00323 * 21 19 17 25 25 C 1.46998 * 118.75572 * 306.38683 * 16 15 14 26 26 C 1.37992 * 118.23756 * 359.97438 * 6 4 3 27 27 N 1.34340 * 120.37383 * 0.02562 * 26 6 4 28 28 H 0.96991 * 118.80827 * 179.97438 * 27 26 6 29 29 H 1.08999 * 109.47232 * 90.00169 * 1 2 3 30 30 H 1.09008 * 109.46927 * 209.99987 * 1 2 3 31 31 H 1.09003 * 109.47301 * 329.99381 * 1 2 3 32 32 H 1.07997 * 120.32331 * 0.02562 * 3 2 1 33 33 H 0.96997 * 120.00070 * 354.91207 * 9 7 6 34 34 H 1.08993 * 109.47120 * 174.28413 * 11 10 9 35 35 H 1.08999 * 109.47104 * 294.28588 * 11 10 9 36 36 H 0.96701 * 113.99620 * 179.97438 * 12 11 10 37 37 H 1.08998 * 109.45838 * 61.42968 * 13 10 9 38 38 H 1.08997 * 109.46012 * 181.39312 * 13 10 9 39 39 H 1.08998 * 109.50191 * 58.58687 * 14 13 10 40 40 H 1.09005 * 109.49514 * 178.65163 * 14 13 10 41 41 H 1.08999 * 109.58776 * 174.42519 * 15 14 13 42 42 H 1.09004 * 109.58808 * 294.71204 * 15 14 13 43 43 H 0.96999 * 120.00230 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.58452 * 293.83765 * 25 16 15 45 45 H 1.08991 * 109.62960 * 173.38026 * 25 16 15 46 46 H 1.08003 * 119.81284 * 180.02562 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0059 5 8 4.2051 2.2327 0.0116 6 6 4.2724 -0.1133 0.0056 7 6 5.7435 -0.1847 0.0121 8 8 6.4020 0.8379 0.0183 9 7 6.3600 -1.3832 0.0121 10 6 7.8194 -1.4563 -0.0939 11 6 8.4548 -0.7127 1.0827 12 8 7.9334 -1.2281 2.3093 13 6 8.2689 -0.8126 -1.4076 14 6 7.6073 -1.5344 -2.5838 15 6 8.0465 -3.0020 -2.5895 16 7 7.7486 -3.5897 -1.2762 17 6 7.0080 -4.7373 -1.1771 18 1 6.2602 -4.9634 -1.9227 19 6 7.2186 -5.6100 -0.1184 20 7 8.3356 -5.5461 0.5749 21 14 5.9168 -6.8750 0.3225 22 1 4.7634 -6.7415 -0.6033 23 1 6.4915 -8.2390 0.2031 24 1 5.4607 -6.6503 1.7177 25 6 8.2609 -2.9230 -0.0704 26 6 3.5076 -1.2618 0.0000 27 7 2.1664 -1.1848 -0.0054 28 1 1.6511 -2.0064 -0.0096 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3634 0.8899 0.5139 32 1 1.6135 2.1082 0.0004 33 1 5.8375 -2.1974 0.0824 34 1 9.5355 -0.8527 1.0600 35 1 8.2244 0.3500 1.0080 36 1 8.2933 -0.8022 3.0993 37 1 7.9775 0.2377 -1.4158 38 1 9.3525 -0.8893 -1.4975 39 1 6.5236 -1.4793 -2.4815 40 1 7.9091 -1.0603 -3.5178 41 1 7.5027 -3.5432 -3.3638 42 1 9.1172 -3.0623 -2.7848 43 1 8.4827 -6.1557 1.3150 44 1 9.3495 -2.9766 -0.0579 45 1 7.8587 -3.4115 0.8170 46 1 3.9899 -2.2282 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279518703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:33 Heat of formation + Delta-G solvation = -62.407531 kcal Electronic energy + Delta-G solvation = -30930.360781 eV Core-core repulsion = 26821.200853 eV Total energy + Delta-G solvation = -4109.159928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.97380 -39.58524 -37.72268 -36.86747 -35.79107 -33.72352 -33.43738 -32.44752 -31.38616 -30.13232 -29.68933 -27.94256 -25.42070 -25.00363 -24.09793 -22.39433 -22.18960 -21.32937 -20.31345 -18.64774 -18.63393 -17.28105 -16.88403 -16.65898 -16.21204 -16.00212 -15.40883 -15.04152 -14.62825 -14.44651 -14.37467 -14.06502 -13.82520 -13.54511 -13.28975 -13.15414 -13.06392 -12.91916 -12.87403 -12.78310 -12.38010 -12.33829 -12.20278 -11.84041 -11.39260 -11.11451 -11.02665 -10.79397 -10.45973 -10.23918 -9.97901 -9.82505 -9.63603 -9.57333 -9.47393 -9.21255 -8.68284 -8.56671 -8.26215 -7.97699 -6.72252 -5.87945 -3.31552 0.91630 1.31396 2.61059 3.25746 3.32077 3.35695 3.36557 3.76604 4.09077 4.13846 4.38835 4.50687 4.64025 4.78316 4.92366 4.97640 5.06126 5.24741 5.35166 5.43631 5.43892 5.63910 5.67472 5.76120 5.80190 5.91017 5.93013 6.07347 6.17681 6.35089 6.43376 6.46748 6.54147 6.58737 6.64669 6.72504 6.76043 6.85074 7.01511 7.13239 7.40860 7.57722 7.72454 8.17355 8.28466 8.33548 8.38013 8.99373 9.11519 9.75526 10.35649 11.20109 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010522 B = 0.004921 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.469507 B = 5688.289761 C = 7084.944004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.154 3.846 3 C -0.275 4.275 4 C 0.409 3.591 5 O -0.483 6.483 6 C -0.292 4.292 7 C 0.572 3.428 8 O -0.527 6.527 9 N -0.691 5.691 10 C 0.162 3.838 11 C 0.067 3.933 12 O -0.561 6.561 13 C -0.121 4.121 14 C -0.127 4.127 15 C 0.143 3.857 16 N -0.590 5.590 17 C -0.262 4.262 18 H 0.065 0.935 19 C 0.008 3.992 20 N -0.892 5.892 21 Si 0.895 3.105 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.288 1.288 25 C 0.177 3.823 26 C 0.171 3.829 27 N -0.579 5.579 28 H 0.420 0.580 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.149 0.851 33 H 0.399 0.601 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.367 0.633 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.017 0.983 43 H 0.255 0.745 44 H 0.031 0.969 45 H 0.096 0.904 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.824 6.543 -0.091 15.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.047 3.953 3 C -0.300 4.300 4 C 0.294 3.706 5 O -0.364 6.364 6 C -0.302 4.302 7 C 0.358 3.642 8 O -0.404 6.404 9 N -0.342 5.342 10 C 0.074 3.926 11 C -0.012 4.012 12 O -0.364 6.364 13 C -0.159 4.159 14 C -0.166 4.166 15 C 0.017 3.983 16 N -0.313 5.313 17 C -0.391 4.391 18 H 0.083 0.917 19 C -0.192 4.192 20 N -0.535 5.535 21 Si 0.725 3.275 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.215 1.215 25 C 0.051 3.949 26 C 0.040 3.960 27 N -0.185 5.185 28 H 0.256 0.744 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.166 0.834 33 H 0.234 0.766 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.212 0.788 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.115 0.885 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.266 7.354 -0.405 15.173 hybrid contribution -0.692 -1.347 0.699 1.668 sum -13.958 6.007 0.295 15.199 Atomic orbital electron populations 1.21083 0.88130 1.04747 1.04234 1.20265 0.94658 0.85672 0.94694 1.22239 0.96454 0.97126 1.14151 1.18163 0.88138 0.88024 0.76226 1.90797 1.70008 1.33271 1.42355 1.22678 0.95190 0.94722 1.17652 1.17422 0.85730 0.83998 0.77042 1.90721 1.65527 1.34416 1.49785 1.45714 1.07543 1.07340 1.73627 1.21138 0.79367 0.99966 0.92161 1.22639 0.95953 0.98201 0.84411 1.86528 1.69947 1.64756 1.15195 1.21727 0.99835 1.00203 0.94177 1.21908 1.00425 0.97859 0.96435 1.20967 0.96945 0.91270 0.89109 1.44060 1.61909 1.26094 0.99214 1.19153 1.12296 0.97273 1.10407 0.91699 1.25092 0.96218 0.97106 1.00776 1.70040 1.22430 1.38849 1.22141 0.86351 0.81550 0.81586 0.77992 1.20340 1.21665 1.21514 1.20965 0.96444 0.85460 0.92038 1.22416 0.82383 1.00614 0.90630 1.40725 1.06070 1.08843 1.62894 0.74358 0.89331 0.90503 0.88908 0.83382 0.76564 0.94027 0.91863 0.78818 0.91132 0.92030 0.92515 0.93185 0.92966 0.96495 0.93518 0.95057 0.88540 0.80903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 10.02 36.00 0.36 -0.12 16 2 C 0.15 1.27 6.79 -82.13 -0.56 0.71 16 3 C -0.28 -3.33 9.57 -39.47 -0.38 -3.71 16 4 C 0.41 7.16 6.96 -34.68 -0.24 6.91 16 5 O -0.48 -10.73 16.41 -15.17 -0.25 -10.98 16 6 C -0.29 -4.80 6.05 -102.72 -0.62 -5.43 16 7 C 0.57 11.22 7.18 -12.58 -0.09 11.13 16 8 O -0.53 -12.12 11.90 -14.76 -0.18 -12.29 16 9 N -0.69 -13.03 3.88 -48.59 -0.19 -13.22 16 10 C 0.16 3.21 0.45 -131.69 -0.06 3.15 16 11 C 0.07 1.26 5.61 37.16 0.21 1.47 16 12 O -0.56 -10.39 13.08 -35.23 -0.46 -10.85 16 13 C -0.12 -2.30 4.48 -26.68 -0.12 -2.42 16 14 C -0.13 -2.34 5.93 -26.61 -0.16 -2.50 16 15 C 0.14 2.93 6.52 -3.71 -0.02 2.91 16 16 N -0.59 -13.73 2.88 -172.26 -0.50 -14.23 16 17 C -0.26 -6.54 9.55 -15.06 -0.14 -6.68 16 18 H 0.07 1.59 7.90 -52.49 -0.41 1.17 16 19 C 0.01 0.21 4.86 -17.43 -0.08 0.13 16 20 N -0.89 -24.58 11.41 55.49 0.63 -23.95 16 21 Si 0.90 19.80 29.59 -169.99 -5.03 14.77 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 25 C 0.18 4.05 3.86 -3.67 -0.01 4.04 16 26 C 0.17 1.96 10.73 -16.54 -0.18 1.78 16 27 N -0.58 -4.49 5.16 -9.00 -0.05 -4.53 16 28 H 0.42 1.64 8.70 -40.82 -0.36 1.28 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.16 8.12 -51.92 -0.42 -0.26 16 31 H 0.09 0.31 8.05 -51.93 -0.42 -0.11 16 32 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 33 H 0.40 7.31 6.55 -40.82 -0.27 7.04 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 1.26 6.19 -51.93 -0.32 0.94 16 36 H 0.37 5.04 9.12 45.56 0.42 5.46 16 37 H 0.07 1.42 6.40 -51.93 -0.33 1.09 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.08 7.53 -51.93 -0.39 0.69 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.10 2.49 6.10 -51.93 -0.32 2.17 16 46 H 0.17 1.78 6.43 -52.48 -0.34 1.44 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -37.11 368.44 -8.23 -45.34 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -5.67 Total: 13.00 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: -2.10 Total: 11.39 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.10 Total: -55.93 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -0.89 Total: -34.12 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.11 -8.23 -45.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279518703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.066 kcal (2) G-P(sol) polarization free energy of solvation -37.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds