Wall clock time and date at job start Tue Mar 31 2020 19:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.34869 * 119.10234 * 2 1 4 4 C 1.41673 * 119.34013 * 179.72505 * 3 2 1 5 5 O 1.22081 * 121.06398 * 180.30159 * 4 3 2 6 6 C 1.47099 * 117.86226 * 0.27799 * 4 3 2 7 7 C 1.47282 * 120.87902 * 180.02562 * 6 4 3 8 8 O 1.21623 * 120.00273 * 0.02562 * 7 6 4 9 9 N 1.34778 * 120.00021 * 179.97438 * 7 6 4 10 10 C 1.46500 * 120.00162 * 174.91362 * 9 7 6 11 11 C 1.53004 * 109.50045 * 59.92941 * 10 9 7 12 12 O 1.42895 * 109.46616 * 54.28151 * 11 10 9 13 13 C 1.53048 * 109.49583 * 299.86784 * 10 9 7 14 14 C 1.53042 * 109.53468 * 301.41581 * 13 10 9 15 15 C 1.53193 * 109.31371 * 298.63008 * 14 13 10 16 16 N 1.46930 * 108.77137 * 54.64057 * 15 14 13 17 17 C 1.36938 * 120.63252 * 126.41499 * 16 15 14 18 18 H 1.08001 * 119.99407 * 330.36318 * 17 16 15 19 19 C 1.38809 * 120.00249 * 150.35738 * 17 16 15 20 20 N 1.31619 * 119.99954 * 341.56383 * 19 17 16 21 21 Si 1.86799 * 119.99985 * 161.55625 * 19 17 16 22 22 H 1.48500 * 109.47064 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47095 * 120.00227 * 21 19 17 24 24 H 1.48497 * 109.47234 * 240.00323 * 21 19 17 25 25 C 1.46998 * 118.75572 * 306.38683 * 16 15 14 26 26 C 1.37992 * 118.23756 * 359.97438 * 6 4 3 27 27 N 1.34340 * 120.37383 * 0.02562 * 26 6 4 28 28 H 0.96991 * 118.80827 * 179.97438 * 27 26 6 29 29 H 1.08999 * 109.47232 * 90.00169 * 1 2 3 30 30 H 1.09008 * 109.46927 * 209.99987 * 1 2 3 31 31 H 1.09003 * 109.47301 * 329.99381 * 1 2 3 32 32 H 1.07997 * 120.32331 * 0.02562 * 3 2 1 33 33 H 0.96997 * 120.00070 * 354.91207 * 9 7 6 34 34 H 1.08993 * 109.47120 * 174.28413 * 11 10 9 35 35 H 1.08999 * 109.47104 * 294.28588 * 11 10 9 36 36 H 0.96701 * 113.99620 * 179.97438 * 12 11 10 37 37 H 1.08998 * 109.45838 * 61.42968 * 13 10 9 38 38 H 1.08997 * 109.46012 * 181.39312 * 13 10 9 39 39 H 1.08998 * 109.50191 * 58.58687 * 14 13 10 40 40 H 1.09005 * 109.49514 * 178.65163 * 14 13 10 41 41 H 1.08999 * 109.58776 * 174.42519 * 15 14 13 42 42 H 1.09004 * 109.58808 * 294.71204 * 15 14 13 43 43 H 0.96999 * 120.00230 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.58452 * 293.83765 * 25 16 15 45 45 H 1.08991 * 109.62960 * 173.38026 * 25 16 15 46 46 H 1.08003 * 119.81284 * 180.02562 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0059 5 8 4.2051 2.2327 0.0116 6 6 4.2724 -0.1133 0.0056 7 6 5.7435 -0.1847 0.0121 8 8 6.4020 0.8379 0.0183 9 7 6.3600 -1.3832 0.0121 10 6 7.8194 -1.4563 -0.0939 11 6 8.4548 -0.7127 1.0827 12 8 7.9334 -1.2281 2.3093 13 6 8.2689 -0.8126 -1.4076 14 6 7.6073 -1.5344 -2.5838 15 6 8.0465 -3.0020 -2.5895 16 7 7.7486 -3.5897 -1.2762 17 6 7.0080 -4.7373 -1.1771 18 1 6.2602 -4.9634 -1.9227 19 6 7.2186 -5.6100 -0.1184 20 7 8.3356 -5.5461 0.5749 21 14 5.9168 -6.8750 0.3225 22 1 4.7634 -6.7415 -0.6033 23 1 6.4915 -8.2390 0.2031 24 1 5.4607 -6.6503 1.7177 25 6 8.2609 -2.9230 -0.0704 26 6 3.5076 -1.2618 0.0000 27 7 2.1664 -1.1848 -0.0054 28 1 1.6511 -2.0064 -0.0096 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3634 0.8899 0.5139 32 1 1.6135 2.1082 0.0004 33 1 5.8375 -2.1974 0.0824 34 1 9.5355 -0.8527 1.0600 35 1 8.2244 0.3500 1.0080 36 1 8.2933 -0.8022 3.0993 37 1 7.9775 0.2377 -1.4158 38 1 9.3525 -0.8893 -1.4975 39 1 6.5236 -1.4793 -2.4815 40 1 7.9091 -1.0603 -3.5178 41 1 7.5027 -3.5432 -3.3638 42 1 9.1172 -3.0623 -2.7848 43 1 8.4827 -6.1557 1.3150 44 1 9.3495 -2.9766 -0.0579 45 1 7.8587 -3.4115 0.8170 46 1 3.9899 -2.2282 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279518703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:32 Heat of formation + Delta-G solvation = -91.108056 kcal Electronic energy + Delta-G solvation = -30931.605329 eV Core-core repulsion = 26821.200853 eV Total energy + Delta-G solvation = -4110.404476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.04532 -41.03940 -39.04135 -38.37412 -37.34761 -35.32578 -34.62411 -33.87184 -32.63922 -31.83191 -31.17339 -28.73311 -27.27919 -26.63531 -25.14094 -24.00788 -23.43203 -22.59878 -21.86950 -20.18741 -19.82873 -18.67797 -18.37600 -18.16366 -17.46229 -17.14649 -16.72008 -16.44412 -16.19390 -15.85195 -15.71996 -15.66407 -15.18814 -14.96466 -14.70055 -14.46835 -14.35667 -14.11140 -13.95906 -13.89513 -13.65800 -13.47547 -13.37695 -13.04763 -13.01467 -12.87077 -12.73482 -12.51567 -12.16088 -11.91755 -11.67775 -11.48907 -11.23040 -11.13680 -10.62119 -10.51039 -10.42676 -10.13726 -9.78948 -9.13502 -8.62852 -7.81293 -5.28417 -0.13707 0.36558 1.52154 1.55171 1.65257 1.79337 2.04171 2.33548 2.56914 2.87650 3.33045 3.34047 3.37682 3.66848 3.67661 3.77510 4.01435 4.08158 4.10096 4.24660 4.34179 4.35215 4.44488 4.50041 4.62159 4.75871 4.82682 4.83778 4.85194 4.86953 4.94026 4.98885 5.12340 5.19690 5.20263 5.31609 5.37285 5.48918 5.65423 5.71736 5.75451 5.82252 6.09984 6.44227 6.85897 6.89495 7.12929 7.17816 7.53001 7.87661 8.45273 9.25615 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010522 B = 0.004921 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.469507 B = 5688.289761 C = 7084.944004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.191 3.809 3 C -0.305 4.305 4 C 0.389 3.611 5 O -0.562 6.562 6 C -0.345 4.345 7 C 0.570 3.430 8 O -0.571 6.571 9 N -0.685 5.685 10 C 0.165 3.835 11 C 0.073 3.927 12 O -0.576 6.576 13 C -0.117 4.117 14 C -0.115 4.115 15 C 0.143 3.857 16 N -0.601 5.601 17 C -0.262 4.262 18 H 0.075 0.925 19 C -0.044 4.044 20 N -0.931 5.931 21 Si 0.962 3.038 22 H -0.252 1.252 23 H -0.304 1.304 24 H -0.291 1.291 25 C 0.198 3.802 26 C 0.216 3.784 27 N -0.550 5.550 28 H 0.447 0.553 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.159 0.841 33 H 0.401 0.599 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.387 0.613 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.012 0.988 43 H 0.248 0.752 44 H 0.004 0.996 45 H 0.068 0.932 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.874 4.695 -0.789 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.082 3.918 3 C -0.328 4.328 4 C 0.281 3.719 5 O -0.450 6.450 6 C -0.356 4.356 7 C 0.359 3.641 8 O -0.451 6.451 9 N -0.336 5.336 10 C 0.076 3.924 11 C -0.006 4.006 12 O -0.382 6.382 13 C -0.155 4.155 14 C -0.154 4.154 15 C 0.018 3.982 16 N -0.324 5.324 17 C -0.391 4.391 18 H 0.093 0.907 19 C -0.240 4.240 20 N -0.576 5.576 21 Si 0.790 3.210 22 H -0.176 1.176 23 H -0.232 1.232 24 H -0.218 1.218 25 C 0.071 3.929 26 C 0.081 3.919 27 N -0.157 5.157 28 H 0.289 0.711 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.176 0.824 33 H 0.237 0.763 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.235 0.765 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.030 0.970 43 H 0.057 0.943 44 H 0.022 0.978 45 H 0.086 0.914 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -17.404 5.461 -1.119 18.275 hybrid contribution 0.461 -0.909 0.901 1.360 sum -16.943 4.551 -0.218 17.545 Atomic orbital electron populations 1.21300 0.83677 1.06823 1.06114 1.20858 0.96931 0.84198 0.89778 1.22127 0.93888 0.99533 1.17244 1.18876 0.90341 0.87491 0.75173 1.90746 1.71704 1.35272 1.47288 1.22365 0.93799 0.96258 1.23185 1.17865 0.87173 0.83204 0.75878 1.90689 1.66836 1.35711 1.51891 1.45578 1.06938 1.07387 1.73710 1.20968 0.80353 0.97951 0.93083 1.22523 0.96396 0.97232 0.84480 1.86470 1.70482 1.65265 1.15988 1.21684 1.00249 0.99438 0.94167 1.21788 0.99980 0.96437 0.97155 1.21054 0.96809 0.92372 0.88007 1.44267 1.61867 1.26068 1.00219 1.19496 1.12129 0.97282 1.10231 0.90731 1.25852 0.97903 0.99276 1.00966 1.70210 1.24582 1.40051 1.22742 0.85298 0.79760 0.78079 0.77820 1.17596 1.23191 1.21774 1.20560 0.94533 0.86829 0.90982 1.22488 0.83623 0.99577 0.86258 1.40959 1.05003 1.10373 1.59355 0.71068 0.87196 0.87433 0.87899 0.82356 0.76287 0.93045 0.93067 0.76526 0.92296 0.91461 0.92907 0.90840 0.92080 0.96982 0.94304 0.97765 0.91409 0.78995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.21 10.02 71.23 0.71 0.50 16 2 C 0.19 2.34 6.79 41.20 0.28 2.62 16 3 C -0.30 -7.03 9.57 22.34 0.21 -6.81 16 4 C 0.39 14.14 6.96 25.45 0.18 14.31 16 5 O -0.56 -27.01 16.41 13.56 0.22 -26.79 16 6 C -0.35 -11.43 6.05 -18.63 -0.11 -11.54 16 7 C 0.57 23.12 7.18 86.62 0.62 23.74 16 8 O -0.57 -27.86 11.90 15.03 0.18 -27.68 16 9 N -0.69 -26.12 3.88 -425.90 -1.65 -27.78 16 10 C 0.16 6.69 0.45 3.69 0.00 6.69 16 11 C 0.07 2.85 5.61 71.98 0.40 3.26 16 12 O -0.58 -21.89 13.08 -148.98 -1.95 -23.84 16 13 C -0.12 -4.51 4.48 30.62 0.14 -4.37 16 14 C -0.11 -4.12 5.93 30.67 0.18 -3.94 16 15 C 0.14 5.73 6.52 86.36 0.56 6.29 16 16 N -0.60 -27.83 2.88 -698.91 -2.01 -29.84 16 17 C -0.26 -12.76 9.55 84.03 0.80 -11.96 16 18 H 0.08 3.46 7.90 -2.91 -0.02 3.43 16 19 C -0.04 -2.21 4.86 84.86 0.41 -1.80 16 20 N -0.93 -52.09 11.41 21.65 0.25 -51.84 16 21 Si 0.96 39.77 29.59 68.60 2.03 41.80 16 22 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 23 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 25 C 0.20 9.22 3.86 86.35 0.33 9.56 16 26 C 0.22 4.35 10.73 84.25 0.90 5.25 16 27 N -0.55 -5.86 5.16 -182.38 -0.94 -6.80 16 28 H 0.45 0.50 8.70 -92.72 -0.81 -0.30 16 29 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.11 -0.34 8.12 -2.38 -0.02 -0.36 16 31 H 0.10 0.14 8.05 -2.39 -0.02 0.12 16 32 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 33 H 0.40 14.48 6.55 -92.71 -0.61 13.87 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.05 2.15 6.19 -2.39 -0.01 2.14 16 36 H 0.39 10.87 9.12 -74.06 -0.68 10.20 16 37 H 0.06 2.45 6.40 -2.39 -0.02 2.44 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.05 1.95 7.53 -2.39 -0.02 1.93 16 40 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.06 2.32 7.93 -2.39 -0.02 2.31 16 42 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.25 13.61 8.31 -92.71 -0.77 12.83 16 44 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.07 3.58 6.10 -2.39 -0.01 3.57 16 46 H 0.19 3.24 6.43 -2.91 -0.02 3.23 16 Total: -1.00 -88.33 368.44 0.72 -87.62 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: -1.04 Total: 33.36 kcal Atomic # 6 Polarization: 26.17 SS G_CDS: 5.63 Total: 31.81 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -4.36 Total: -116.27 kcal Atomic # 8 Polarization: -76.76 SS G_CDS: -1.55 Total: -78.31 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -88.33 0.72 -87.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279518703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.492 kcal (2) G-P(sol) polarization free energy of solvation -88.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds