Wall clock time and date at job start Tue Mar 31 2020 19:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30017 * 127.33294 * 2 1 4 4 O 1.20660 * 112.29529 * 180.30535 * 3 2 1 5 5 C 1.33489 * 113.16241 * 359.70913 * 4 3 2 6 6 C 1.50694 * 126.83048 * 180.02562 * 5 4 3 7 7 C 1.52998 * 117.49895 * 8.72840 * 6 5 4 8 8 C 1.52997 * 117.50137 * 300.06509 * 6 5 4 9 9 C 1.37364 * 106.33936 * 0.02562 * 5 4 3 10 10 C 1.47393 * 128.56360 * 179.97438 * 9 5 4 11 11 O 1.21603 * 120.00587 * 89.99387 * 10 9 5 12 12 N 1.34784 * 119.99688 * 269.99335 * 10 9 5 13 13 C 1.46497 * 119.99874 * 184.19749 * 12 10 9 14 14 C 1.52997 * 113.28093 * 307.08329 * 13 12 10 15 15 C 1.52998 * 109.47306 * 292.25202 * 14 13 12 16 16 O 1.42901 * 109.47603 * 174.82570 * 15 14 13 17 17 C 1.53501 * 114.20454 * 174.01885 * 13 12 10 18 18 N 1.47072 * 87.98350 * 220.14574 * 17 13 12 19 19 C 1.36940 * 136.05655 * 207.08757 * 18 17 13 20 20 H 1.07992 * 119.99801 * 5.84566 * 19 18 17 21 21 C 1.38807 * 119.99651 * 185.85026 * 19 18 17 22 22 N 1.31615 * 120.00264 * 6.67880 * 21 19 18 23 23 Si 1.86806 * 119.99773 * 186.95422 * 21 19 18 24 24 H 1.48497 * 109.46896 * 264.84765 * 23 21 19 25 25 H 1.48499 * 109.46779 * 24.84311 * 23 21 19 26 26 H 1.48504 * 109.47121 * 144.84482 * 23 21 19 27 27 C 1.47070 * 87.88663 * 27.34174 * 18 17 13 28 28 H 1.08997 * 109.46574 * 270.14664 * 1 2 3 29 29 H 1.08994 * 109.46732 * 30.14536 * 1 2 3 30 30 H 1.08999 * 109.47070 * 150.14609 * 1 2 3 31 31 H 1.09007 * 115.54622 * 154.39217 * 6 5 4 32 32 H 1.09000 * 117.49754 * 359.97438 * 7 6 5 33 33 H 1.09005 * 117.49923 * 145.02081 * 7 6 5 34 34 H 1.09000 * 117.49813 * 214.97856 * 8 6 5 35 35 H 1.09002 * 117.49664 * 359.97438 * 8 6 5 36 36 H 0.96997 * 119.99965 * 4.19311 * 12 10 9 37 37 H 1.08997 * 109.47436 * 52.25989 * 14 13 12 38 38 H 1.09005 * 109.47073 * 172.25948 * 14 13 12 39 39 H 1.08998 * 109.47409 * 294.83267 * 15 14 13 40 40 H 1.09002 * 109.46624 * 54.82939 * 15 14 13 41 41 H 0.96693 * 114.00382 * 180.02562 * 16 15 14 42 42 H 1.08997 * 113.46381 * 105.36822 * 17 13 12 43 43 H 1.08998 * 113.52188 * 334.93267 * 17 13 12 44 44 H 0.97004 * 119.99826 * 180.27489 * 22 21 19 45 45 H 1.08998 * 113.46993 * 87.43505 * 27 18 17 46 46 H 1.08995 * 113.47039 * 217.87964 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7207 -0.0059 5 6 3.6495 -0.6007 -0.0048 6 6 4.9712 -1.3245 -0.0104 7 6 6.2362 -0.4870 0.1878 8 6 5.9114 -1.0694 -1.1901 9 6 2.3992 -1.1696 0.0025 10 6 2.0402 -2.5991 0.0061 11 8 1.8977 -3.1877 1.0607 12 7 1.8697 -3.2541 -1.1595 13 6 1.4235 -4.6494 -1.1572 14 6 2.2814 -5.5572 -0.2736 15 6 3.6785 -5.6898 -0.8831 16 8 4.5153 -6.4376 0.0015 17 6 1.1344 -5.2200 -2.5526 18 7 -0.0361 -5.8984 -1.9758 19 6 -0.7593 -7.0268 -2.2565 20 1 -0.4299 -7.6997 -3.0343 21 6 -1.9158 -7.3057 -1.5413 22 7 -2.3896 -6.4242 -0.6864 23 14 -2.7956 -8.9352 -1.7865 24 1 -3.8816 -8.7661 -2.7851 25 1 -1.8286 -9.9512 -2.2742 26 1 -3.3758 -9.3838 -0.4952 27 6 -0.0920 -4.8280 -0.9687 28 1 -0.3632 0.0026 1.0277 29 1 -0.3632 0.8886 -0.5161 30 1 -0.3633 -0.8913 -0.5116 31 1 4.9597 -2.3275 0.4164 32 1 6.1123 0.5877 0.3217 33 1 7.0571 -0.9391 0.7444 34 1 6.5188 -1.9044 -1.5393 35 1 5.5737 -0.3784 -1.9625 36 1 2.0424 -2.8015 -1.9998 37 1 2.3597 -5.1248 0.7239 38 1 1.8191 -6.5421 -0.2074 39 1 3.6096 -6.2055 -1.8409 40 1 4.1044 -4.6979 -1.0344 41 1 5.4183 -6.5608 -0.3214 42 1 1.9025 -5.9068 -2.9083 43 1 0.8760 -4.4590 -3.2888 44 1 -3.1956 -6.6207 -0.1838 45 1 -0.6738 -3.9628 -1.2867 46 1 -0.3688 -5.1807 0.0247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282527977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:22 Heat of formation + Delta-G solvation = 63.776647 kcal Electronic energy + Delta-G solvation = -30066.720309 eV Core-core repulsion = 25963.032138 eV Total energy + Delta-G solvation = -4103.688171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.96025 -40.09002 -38.05367 -37.63612 -36.47662 -34.60960 -33.67406 -32.20022 -31.58583 -30.32588 -28.84013 -27.26029 -25.10663 -24.99518 -23.79979 -23.14326 -22.78624 -21.85320 -20.62055 -19.56958 -18.80149 -17.92906 -17.79910 -17.21491 -16.79486 -16.64008 -16.06888 -15.58995 -14.99818 -14.79827 -14.44832 -14.37020 -13.86794 -13.71019 -13.56314 -13.42638 -13.40468 -13.01769 -12.69241 -12.28436 -12.07287 -11.96720 -11.72460 -11.60643 -11.55850 -11.40363 -11.22550 -11.03861 -10.89012 -10.78465 -10.72743 -10.22160 -10.14712 -9.97326 -9.85091 -9.59718 -9.31959 -9.15207 -8.84585 -8.62635 -6.99272 -5.84139 -3.17239 1.13667 1.84209 2.54775 2.69994 3.30009 3.37387 3.42243 3.44782 3.49208 3.92200 4.09051 4.37059 4.38105 4.42698 4.52506 4.57321 4.81987 5.02622 5.12852 5.23852 5.24690 5.29096 5.40782 5.42365 5.45278 5.49196 5.54203 5.57615 5.59861 5.67471 5.69877 5.77857 5.85896 6.00824 6.12801 6.28142 6.38498 6.48620 6.82417 6.84808 7.13615 7.23661 7.46528 7.74466 7.81485 7.89097 8.12253 8.40483 8.95735 9.62761 10.52487 11.33760 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.003541 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.512289 B = 7905.648947 C = 9241.681495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.059 3.941 3 N -0.358 5.358 4 O 0.093 5.907 5 C 0.042 3.958 6 C -0.091 4.091 7 C -0.162 4.162 8 C -0.157 4.157 9 C -0.236 4.236 10 C 0.598 3.402 11 O -0.512 6.512 12 N -0.700 5.700 13 C 0.118 3.882 14 C -0.102 4.102 15 C 0.083 3.917 16 O -0.572 6.572 17 C 0.117 3.883 18 N -0.597 5.597 19 C -0.224 4.224 20 H 0.084 0.916 21 C -0.002 4.002 22 N -0.913 5.913 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.279 1.279 26 H -0.288 1.288 27 C 0.166 3.834 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.140 0.860 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.397 0.603 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.035 0.965 41 H 0.370 0.630 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.256 0.744 45 H 0.032 0.968 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.877 12.534 -2.051 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 N -0.066 5.066 4 O 0.032 5.968 5 C -0.021 4.021 6 C -0.111 4.111 7 C -0.199 4.199 8 C -0.194 4.194 9 C -0.243 4.243 10 C 0.381 3.619 11 O -0.388 6.388 12 N -0.351 5.351 13 C 0.032 3.968 14 C -0.140 4.140 15 C 0.006 3.994 16 O -0.376 6.376 17 C -0.010 4.010 18 N -0.323 5.323 19 C -0.351 4.351 20 H 0.101 0.899 21 C -0.200 4.200 22 N -0.559 5.559 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.204 1.204 26 H -0.215 1.215 27 C 0.039 3.961 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.158 0.842 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.231 0.769 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.216 0.784 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.049 0.951 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.705 13.133 -0.888 20.492 hybrid contribution -0.277 -1.166 -0.980 1.548 sum 15.428 11.967 -1.868 19.614 Atomic orbital electron populations 1.20270 0.84880 1.04386 1.04210 1.24790 0.98682 0.86406 1.00388 1.73616 0.89001 1.23249 1.20691 1.84477 1.21632 1.22382 1.68298 1.23474 0.95467 0.83503 0.99688 1.20517 0.84104 0.99677 1.06754 1.23099 0.96934 1.00307 0.99577 1.23137 1.00831 1.03867 0.91614 1.22026 0.92299 0.95821 1.14139 1.16824 0.77189 0.83401 0.84489 1.90809 1.49606 1.67172 1.31164 1.45959 1.68074 1.13439 1.07621 1.22780 0.97047 0.78388 0.98598 1.21416 0.91626 1.00729 1.00265 1.22159 0.91589 0.93461 0.92239 1.86538 1.25451 1.76947 1.48698 1.22679 0.91557 0.94586 0.92210 1.45322 1.32356 1.23248 1.31396 1.18867 1.03214 0.95550 1.17463 0.89860 1.24842 0.97147 0.98506 0.99464 1.69855 1.23403 1.33918 1.28706 0.86093 0.79509 0.82914 0.77162 1.21575 1.20393 1.21462 1.22354 0.87584 0.90273 0.95908 0.89440 0.90010 0.89262 0.84230 0.87658 0.87385 0.87287 0.87984 0.76864 0.88689 0.89184 0.93849 0.94690 0.78421 0.93372 0.94705 0.93427 0.95051 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.49 36.01 0.38 -0.56 16 2 C 0.06 0.81 7.59 -79.76 -0.61 0.20 16 3 N -0.36 -4.91 12.01 34.78 0.42 -4.50 16 4 O 0.09 1.16 10.86 18.66 0.20 1.37 16 5 C 0.04 0.50 7.00 -34.63 -0.24 0.26 16 6 C -0.09 -0.83 6.14 -91.78 -0.56 -1.39 16 7 C -0.16 -1.08 10.19 -26.69 -0.27 -1.35 16 8 C -0.16 -1.02 10.24 -26.69 -0.27 -1.29 16 9 C -0.24 -3.29 6.25 -102.89 -0.64 -3.93 16 10 C 0.60 9.59 7.44 -12.53 -0.09 9.50 16 11 O -0.51 -10.26 14.79 5.27 0.08 -10.19 16 12 N -0.70 -10.33 5.05 -48.37 -0.24 -10.58 16 13 C 0.12 2.15 0.84 -131.56 -0.11 2.04 16 14 C -0.10 -1.91 4.89 -26.73 -0.13 -2.05 16 15 C 0.08 1.22 6.81 37.16 0.25 1.47 16 16 O -0.57 -8.34 13.66 -35.23 -0.48 -8.82 16 17 C 0.12 2.21 7.82 -8.49 -0.07 2.14 16 18 N -0.60 -14.74 3.54 -184.53 -0.65 -15.39 16 19 C -0.22 -6.10 10.73 -15.06 -0.16 -6.27 16 20 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 21 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 22 N -0.91 -26.98 11.79 55.49 0.65 -26.32 16 23 Si 0.91 21.86 29.56 -169.99 -5.02 16.83 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.17 3.88 6.63 -8.35 -0.06 3.82 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.14 1.35 8.14 -51.92 -0.42 0.93 16 32 H 0.10 0.70 8.02 -51.93 -0.42 0.28 16 33 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.40 4.75 8.66 -40.82 -0.35 4.40 16 37 H 0.09 1.96 5.70 -51.93 -0.30 1.67 16 38 H 0.09 1.97 7.94 -51.93 -0.41 1.56 16 39 H 0.04 0.61 6.94 -51.93 -0.36 0.25 16 40 H 0.03 0.45 7.90 -51.93 -0.41 0.04 16 41 H 0.37 3.32 9.12 45.56 0.42 3.74 16 42 H 0.05 0.85 6.84 -51.93 -0.36 0.49 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.07 1.88 7.53 -51.93 -0.39 1.49 16 LS Contribution 389.23 15.07 5.87 5.87 Total: -1.00 -34.37 389.23 -7.80 -42.17 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.93 Total: 7.11 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -2.68 Total: 2.45 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.17 Total: -56.79 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.20 Total: -17.64 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.37 -7.80 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282527977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.949 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds