Wall clock time and date at job start Tue Mar 31 2020 19:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30017 * 127.33294 * 2 1 4 4 O 1.20660 * 112.29529 * 180.30535 * 3 2 1 5 5 C 1.33489 * 113.16241 * 359.70913 * 4 3 2 6 6 C 1.50694 * 126.83048 * 180.02562 * 5 4 3 7 7 C 1.52998 * 117.49895 * 8.72840 * 6 5 4 8 8 C 1.52997 * 117.50137 * 300.06509 * 6 5 4 9 9 C 1.37364 * 106.33936 * 0.02562 * 5 4 3 10 10 C 1.47393 * 128.56360 * 179.97438 * 9 5 4 11 11 O 1.21603 * 120.00587 * 89.99387 * 10 9 5 12 12 N 1.34784 * 119.99688 * 269.99335 * 10 9 5 13 13 C 1.46497 * 119.99874 * 184.19749 * 12 10 9 14 14 C 1.52997 * 113.28093 * 307.08329 * 13 12 10 15 15 C 1.52998 * 109.47306 * 292.25202 * 14 13 12 16 16 O 1.42901 * 109.47603 * 174.82570 * 15 14 13 17 17 C 1.53501 * 114.20454 * 174.01885 * 13 12 10 18 18 N 1.47072 * 87.98350 * 220.14574 * 17 13 12 19 19 C 1.36940 * 136.05655 * 207.08757 * 18 17 13 20 20 H 1.07992 * 119.99801 * 5.84566 * 19 18 17 21 21 C 1.38807 * 119.99651 * 185.85026 * 19 18 17 22 22 N 1.31615 * 120.00264 * 6.67880 * 21 19 18 23 23 Si 1.86806 * 119.99773 * 186.95422 * 21 19 18 24 24 H 1.48497 * 109.46896 * 264.84765 * 23 21 19 25 25 H 1.48499 * 109.46779 * 24.84311 * 23 21 19 26 26 H 1.48504 * 109.47121 * 144.84482 * 23 21 19 27 27 C 1.47070 * 87.88663 * 27.34174 * 18 17 13 28 28 H 1.08997 * 109.46574 * 270.14664 * 1 2 3 29 29 H 1.08994 * 109.46732 * 30.14536 * 1 2 3 30 30 H 1.08999 * 109.47070 * 150.14609 * 1 2 3 31 31 H 1.09007 * 115.54622 * 154.39217 * 6 5 4 32 32 H 1.09000 * 117.49754 * 359.97438 * 7 6 5 33 33 H 1.09005 * 117.49923 * 145.02081 * 7 6 5 34 34 H 1.09000 * 117.49813 * 214.97856 * 8 6 5 35 35 H 1.09002 * 117.49664 * 359.97438 * 8 6 5 36 36 H 0.96997 * 119.99965 * 4.19311 * 12 10 9 37 37 H 1.08997 * 109.47436 * 52.25989 * 14 13 12 38 38 H 1.09005 * 109.47073 * 172.25948 * 14 13 12 39 39 H 1.08998 * 109.47409 * 294.83267 * 15 14 13 40 40 H 1.09002 * 109.46624 * 54.82939 * 15 14 13 41 41 H 0.96693 * 114.00382 * 180.02562 * 16 15 14 42 42 H 1.08997 * 113.46381 * 105.36822 * 17 13 12 43 43 H 1.08998 * 113.52188 * 334.93267 * 17 13 12 44 44 H 0.97004 * 119.99826 * 180.27489 * 22 21 19 45 45 H 1.08998 * 113.46993 * 87.43505 * 27 18 17 46 46 H 1.08995 * 113.47039 * 217.87964 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7207 -0.0059 5 6 3.6495 -0.6007 -0.0048 6 6 4.9712 -1.3245 -0.0104 7 6 6.2362 -0.4870 0.1878 8 6 5.9114 -1.0694 -1.1901 9 6 2.3992 -1.1696 0.0025 10 6 2.0402 -2.5991 0.0061 11 8 1.8977 -3.1877 1.0607 12 7 1.8697 -3.2541 -1.1595 13 6 1.4235 -4.6494 -1.1572 14 6 2.2814 -5.5572 -0.2736 15 6 3.6785 -5.6898 -0.8831 16 8 4.5153 -6.4376 0.0015 17 6 1.1344 -5.2200 -2.5526 18 7 -0.0361 -5.8984 -1.9758 19 6 -0.7593 -7.0268 -2.2565 20 1 -0.4299 -7.6997 -3.0343 21 6 -1.9158 -7.3057 -1.5413 22 7 -2.3896 -6.4242 -0.6864 23 14 -2.7956 -8.9352 -1.7865 24 1 -3.8816 -8.7661 -2.7851 25 1 -1.8286 -9.9512 -2.2742 26 1 -3.3758 -9.3838 -0.4952 27 6 -0.0920 -4.8280 -0.9687 28 1 -0.3632 0.0026 1.0277 29 1 -0.3632 0.8886 -0.5161 30 1 -0.3633 -0.8913 -0.5116 31 1 4.9597 -2.3275 0.4164 32 1 6.1123 0.5877 0.3217 33 1 7.0571 -0.9391 0.7444 34 1 6.5188 -1.9044 -1.5393 35 1 5.5737 -0.3784 -1.9625 36 1 2.0424 -2.8015 -1.9998 37 1 2.3597 -5.1248 0.7239 38 1 1.8191 -6.5421 -0.2074 39 1 3.6096 -6.2055 -1.8409 40 1 4.1044 -4.6979 -1.0344 41 1 5.4183 -6.5608 -0.3214 42 1 1.9025 -5.9068 -2.9083 43 1 0.8760 -4.4590 -3.2888 44 1 -3.1956 -6.6207 -0.1838 45 1 -0.6738 -3.9628 -1.2867 46 1 -0.3688 -5.1807 0.0247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282527977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:21 Heat of formation + Delta-G solvation = 38.026447 kcal Electronic energy + Delta-G solvation = -30067.836921 eV Core-core repulsion = 25963.032138 eV Total energy + Delta-G solvation = -4104.804784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.98563 -41.59783 -39.53371 -38.30783 -37.66955 -35.67428 -35.29175 -33.89402 -32.78744 -31.76428 -29.83286 -29.12324 -26.70985 -26.37510 -24.77124 -24.47422 -23.45628 -23.26833 -21.94426 -20.54666 -20.30830 -19.08436 -18.82804 -18.75288 -18.35301 -17.59884 -17.25149 -16.94606 -16.65963 -16.06159 -15.81495 -15.69111 -15.35899 -15.05632 -14.74082 -14.48908 -14.36153 -14.35501 -13.98091 -13.85069 -13.22597 -13.15254 -13.04358 -12.99042 -12.83328 -12.70415 -12.50132 -12.38327 -12.33689 -12.17192 -12.06115 -11.80353 -11.40479 -11.40220 -11.12486 -10.98580 -10.86521 -10.59735 -10.21498 -10.13661 -8.99711 -7.94915 -5.28573 0.18040 0.78015 1.29437 1.45032 1.47812 1.56793 1.66659 2.11118 2.48248 2.84401 3.00476 3.11789 3.14510 3.29777 3.35470 3.62020 3.68770 3.74651 3.90421 4.01478 4.14267 4.16709 4.30947 4.34305 4.44805 4.47296 4.51076 4.53493 4.61577 4.65799 4.72320 4.80324 4.90516 4.95359 4.97236 5.04207 5.09753 5.16456 5.17417 5.25166 5.30507 5.44426 5.64331 5.84386 6.48000 6.84491 6.98925 7.12284 7.13418 7.56159 8.52863 9.23635 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.003541 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.512289 B = 7905.648947 C = 9241.681495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.053 3.947 3 N -0.370 5.370 4 O 0.097 5.903 5 C 0.068 3.932 6 C -0.121 4.121 7 C -0.151 4.151 8 C -0.137 4.137 9 C -0.266 4.266 10 C 0.608 3.392 11 O -0.557 6.557 12 N -0.683 5.683 13 C 0.150 3.850 14 C -0.099 4.099 15 C 0.095 3.905 16 O -0.593 6.593 17 C 0.126 3.874 18 N -0.627 5.627 19 C -0.227 4.227 20 H 0.095 0.905 21 C -0.066 4.066 22 N -0.954 5.954 23 Si 0.980 3.020 24 H -0.284 1.284 25 H -0.262 1.262 26 H -0.299 1.299 27 C 0.162 3.838 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.134 0.866 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.106 0.894 36 H 0.417 0.583 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.397 0.603 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.248 0.752 45 H 0.019 0.981 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.964 13.090 -4.225 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 N -0.078 5.078 4 O 0.037 5.963 5 C 0.004 3.996 6 C -0.140 4.140 7 C -0.188 4.188 8 C -0.174 4.174 9 C -0.274 4.274 10 C 0.393 3.607 11 O -0.435 6.435 12 N -0.335 5.335 13 C 0.063 3.937 14 C -0.137 4.137 15 C 0.017 3.983 16 O -0.402 6.402 17 C 0.001 3.999 18 N -0.353 5.353 19 C -0.354 4.354 20 H 0.113 0.887 21 C -0.260 4.260 22 N -0.602 5.602 23 Si 0.807 3.193 24 H -0.211 1.211 25 H -0.187 1.187 26 H -0.226 1.226 27 C 0.034 3.966 28 H 0.106 0.894 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.152 0.848 32 H 0.124 0.876 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.124 0.876 36 H 0.254 0.746 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.247 0.753 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.037 0.963 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 18.867 13.720 -3.131 23.538 hybrid contribution -1.122 -1.273 -0.271 1.719 sum 17.745 12.447 -3.402 21.941 Atomic orbital electron populations 1.20318 0.84149 1.04869 1.04444 1.25028 0.99363 0.86308 1.00162 1.73604 0.89361 1.23345 1.21500 1.84465 1.21187 1.22580 1.68040 1.23944 0.96021 0.83046 0.96556 1.20657 0.83626 0.99634 1.10063 1.23242 0.95479 1.00105 0.99988 1.23288 0.98740 1.04254 0.91069 1.21745 0.93568 0.94489 1.17557 1.16998 0.75874 0.84078 0.83788 1.90802 1.51467 1.68414 1.32821 1.45654 1.67342 1.12029 1.08474 1.22094 0.93440 0.80133 0.98060 1.21268 0.94451 0.98283 0.99720 1.21972 0.89148 0.95231 0.91935 1.86475 1.27418 1.76971 1.49301 1.22808 0.89691 0.94986 0.92440 1.45561 1.33627 1.23279 1.32820 1.19331 1.02897 0.96535 1.16678 0.88693 1.25710 0.98557 1.01863 0.99835 1.70060 1.23800 1.35960 1.30350 0.85051 0.78478 0.79294 0.76453 1.21121 1.18660 1.22571 1.22266 0.91486 0.89590 0.93242 0.89354 0.88068 0.90180 0.84848 0.87617 0.85619 0.85158 0.87607 0.74584 0.91061 0.93147 0.92357 0.92013 0.75325 0.90877 0.92049 0.94355 0.96312 0.96337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 10.49 71.24 0.75 -1.15 16 2 C 0.05 1.43 7.59 45.16 0.34 1.77 16 3 N -0.37 -9.76 12.01 -44.78 -0.54 -10.30 16 4 O 0.10 2.27 10.86 77.01 0.84 3.11 16 5 C 0.07 1.51 7.00 25.48 0.18 1.69 16 6 C -0.12 -1.88 6.14 -11.54 -0.07 -1.95 16 7 C -0.15 -1.51 10.19 30.62 0.31 -1.20 16 8 C -0.14 -1.22 10.24 30.62 0.31 -0.91 16 9 C -0.27 -7.28 6.25 -18.75 -0.12 -7.39 16 10 C 0.61 19.57 7.44 86.65 0.64 20.22 16 11 O -0.56 -23.20 14.79 -4.04 -0.06 -23.26 16 12 N -0.68 -19.54 5.05 -425.20 -2.15 -21.69 16 13 C 0.15 5.45 0.84 4.17 0.00 5.45 16 14 C -0.10 -3.75 4.89 30.59 0.15 -3.60 16 15 C 0.09 2.56 6.81 71.98 0.49 3.05 16 16 O -0.59 -16.04 13.66 -148.98 -2.04 -18.08 16 17 C 0.13 4.54 7.82 83.19 0.65 5.19 16 18 N -0.63 -31.31 3.54 -737.72 -2.61 -33.93 16 19 C -0.23 -12.46 10.73 84.03 0.90 -11.56 16 20 H 0.10 4.86 7.84 -2.91 -0.02 4.84 16 21 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 22 N -0.95 -59.15 11.79 21.65 0.26 -58.89 16 23 Si 0.98 45.87 29.56 68.60 2.03 47.90 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 25 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 27 C 0.16 7.93 6.63 83.28 0.55 8.48 16 28 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.11 1.08 8.02 -2.39 -0.02 1.06 16 33 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.42 8.96 8.66 -92.71 -0.80 8.15 16 37 H 0.07 3.07 5.70 -2.39 -0.01 3.06 16 38 H 0.05 2.29 7.94 -2.38 -0.02 2.27 16 39 H 0.06 1.42 6.94 -2.39 -0.02 1.41 16 40 H 0.06 1.36 7.90 -2.39 -0.02 1.34 16 41 H 0.40 5.83 9.12 -74.06 -0.68 5.15 16 42 H 0.07 2.32 6.84 -2.39 -0.02 2.30 16 43 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 45 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.02 1.07 7.53 -2.39 -0.02 1.05 16 Total: -1.00 -79.53 389.23 0.84 -78.69 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -0.45 Total: 21.69 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 5.56 Total: 14.76 kcal Atomic # 7 Polarization: -119.77 SS G_CDS: -5.04 Total: -124.81 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.26 Total: -38.23 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -79.53 0.84 -78.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282527977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.719 kcal (2) G-P(sol) polarization free energy of solvation -79.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds