Wall clock time and date at job start Tue Mar 31 2020 18:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35450 * 126.77708 * 2 1 4 4 C 1.41372 * 103.98739 * 180.02562 * 3 2 1 5 5 C 1.50694 * 126.80407 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47245 * 0.02562 * 5 4 3 7 7 C 1.42895 * 114.00345 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47290 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99981 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00204 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00275 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47060 * 179.97438 * 11 10 8 13 13 H 1.09002 * 115.51732 * 29.41802 * 12 11 10 14 14 C 1.52998 * 117.44387 * 244.00023 * 12 11 10 15 15 H 1.08998 * 119.53858 * 4.16402 * 14 12 11 16 16 C 1.54382 * 118.12429 * 160.85575 * 14 12 11 17 17 N 1.48149 * 104.61815 * 87.19216 * 16 14 12 18 18 C 1.36932 * 127.84199 * 140.41203 * 17 16 14 19 19 H 1.08002 * 120.00310 * 195.57697 * 18 17 16 20 20 C 1.38820 * 120.00042 * 15.56858 * 18 17 16 21 21 N 1.31622 * 119.99441 * 9.11018 * 20 18 17 22 22 Si 1.86794 * 120.00203 * 189.10417 * 20 18 17 23 23 H 1.48498 * 109.47468 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46993 * 120.00396 * 22 20 18 25 25 H 1.48506 * 109.47008 * 240.00118 * 22 20 18 26 26 C 1.47829 * 104.29602 * 320.40830 * 17 16 14 27 27 C 1.53001 * 117.44142 * 174.83145 * 12 11 10 28 28 H 1.09004 * 119.53710 * 355.84016 * 27 12 11 29 29 N 1.30183 * 106.39548 * 0.26889 * 4 3 2 30 30 O 1.20918 * 111.60174 * 359.52863 * 29 4 3 31 31 H 1.09003 * 109.47211 * 89.99608 * 1 2 3 32 32 H 1.08998 * 109.47000 * 209.99119 * 1 2 3 33 33 H 1.09000 * 109.47137 * 329.99399 * 1 2 3 34 34 H 1.07999 * 128.00595 * 0.06630 * 3 2 1 35 35 H 1.09005 * 109.47308 * 240.00600 * 5 4 3 36 36 H 1.09002 * 109.47359 * 120.00191 * 5 4 3 37 37 H 1.08999 * 109.47480 * 60.00003 * 7 6 5 38 38 H 1.09000 * 109.47337 * 299.99795 * 7 6 5 39 39 H 0.97009 * 120.00021 * 0.02562 * 10 8 7 40 40 H 1.09000 * 109.47216 * 60.00213 * 11 10 8 41 41 H 1.08997 * 109.47126 * 300.00126 * 11 10 8 42 42 H 1.09001 * 110.41022 * 205.97651 * 16 14 12 43 43 H 1.09004 * 110.40691 * 328.41059 * 16 14 12 44 44 H 0.97002 * 119.99889 * 180.02562 * 21 20 18 45 45 H 1.09001 * 110.42625 * 280.76818 * 26 17 16 46 46 H 1.09004 * 110.31600 * 158.39273 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5373 -0.0006 5 6 4.9210 1.3000 -0.0003 6 8 4.6500 2.7031 0.0013 7 6 5.8214 3.5214 0.0011 8 6 5.4196 4.9738 0.0022 9 8 4.2456 5.2782 0.0036 10 7 6.3648 5.9346 0.0028 11 6 5.9742 7.3465 0.0044 12 6 7.2285 8.2227 0.0054 13 1 8.1041 7.7897 -0.4783 14 6 7.4658 9.1130 1.2268 15 1 6.7870 9.0505 2.0774 16 6 8.8931 9.6485 1.4708 17 7 8.9608 10.9033 0.6861 18 6 9.5594 12.0833 1.0388 19 1 9.3271 12.9892 0.4986 20 6 10.4646 12.1152 2.0908 21 7 10.8841 10.9913 2.6321 22 14 11.0872 13.7532 2.7378 23 1 10.4671 14.8590 1.9647 24 1 10.7254 13.8887 4.1717 25 1 12.5638 13.8139 2.5920 26 6 8.2356 10.5918 -0.5638 27 6 7.0321 9.7352 -0.1152 28 1 6.0299 10.1367 -0.2654 29 7 3.4764 -0.7564 -0.0068 30 8 2.3095 -1.0736 -0.0007 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5137 33 1 -0.3633 0.8899 0.5139 34 1 2.0345 2.1270 0.0010 35 1 5.4943 1.0414 -0.8907 36 1 5.4947 1.0401 0.8893 37 1 6.4128 3.3092 -0.8896 38 1 6.4143 3.3074 0.8904 39 1 7.3038 5.6911 0.0021 40 1 5.3825 7.5588 0.8949 41 1 5.3816 7.5606 -0.8850 42 1 9.0460 9.8540 2.5302 43 1 9.6337 8.9345 1.1104 44 1 11.5164 11.0135 3.3675 45 1 8.8733 10.0255 -1.2426 46 1 7.8920 11.5098 -1.0408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282862364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:16 Heat of formation + Delta-G solvation = 43.858506 kcal Electronic energy + Delta-G solvation = -27035.692381 eV Core-core repulsion = 22931.140495 eV Total energy + Delta-G solvation = -4104.551887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.27092 -40.01316 -38.90514 -38.02416 -35.03805 -34.58832 -33.70391 -33.39892 -31.01645 -29.57500 -28.15764 -27.66175 -27.17016 -26.31961 -24.61733 -23.25073 -21.21793 -21.08109 -20.60969 -19.79935 -19.30313 -18.06716 -17.83595 -17.27590 -16.98492 -16.84539 -16.72891 -15.63174 -15.26267 -15.13868 -14.82231 -14.41830 -14.13533 -13.99433 -13.81269 -13.67256 -13.40365 -13.34695 -12.94139 -12.77976 -12.71023 -12.60090 -12.24103 -11.86898 -11.53095 -11.29603 -11.14470 -10.87324 -10.74713 -10.73463 -10.33334 -10.13747 -10.04714 -10.01772 -9.78567 -9.63972 -9.47889 -9.15284 -9.02420 -8.68151 -6.90711 -5.83991 -3.18186 1.10244 1.86814 2.35625 2.44897 2.76005 3.33838 3.35341 3.41563 3.43808 3.99794 4.10413 4.27930 4.42748 4.48528 4.64392 4.70318 4.73407 4.79805 4.84731 4.89069 4.95011 4.96896 5.04230 5.27591 5.32709 5.33138 5.39007 5.45173 5.46428 5.72680 5.76407 5.85730 5.88177 5.90788 6.19219 6.25702 6.47649 6.52089 6.62313 6.67411 6.87938 7.30770 7.35763 7.49246 7.68226 7.88290 8.06355 8.17191 9.07305 9.70245 10.46826 11.30443 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035539 B = 0.001470 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.673323 B =19047.998262 C =19346.993774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.205 4.205 4 C 0.017 3.983 5 C 0.143 3.857 6 O -0.356 6.356 7 C 0.046 3.954 8 C 0.513 3.487 9 O -0.523 6.523 10 N -0.721 5.721 11 C 0.157 3.843 12 C -0.151 4.151 13 H 0.103 0.897 14 C -0.168 4.168 15 H 0.102 0.898 16 C 0.183 3.817 17 N -0.594 5.594 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.155 3.845 27 C -0.165 4.165 28 H 0.104 0.896 29 N -0.362 5.362 30 O 0.100 5.900 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.178 0.822 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.404 0.596 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.023 0.977 44 H 0.254 0.746 45 H 0.024 0.976 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.675 -22.270 -6.152 27.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.227 4.227 4 C -0.141 4.141 5 C 0.066 3.934 6 O -0.274 6.274 7 C -0.034 4.034 8 C 0.298 3.702 9 O -0.399 6.399 10 N -0.375 5.375 11 C 0.034 3.966 12 C -0.170 4.170 13 H 0.121 0.879 14 C -0.188 4.188 15 H 0.120 0.880 16 C 0.057 3.943 17 N -0.318 5.318 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.562 5.562 22 Si 0.743 3.257 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.028 3.972 27 C -0.185 4.185 28 H 0.122 0.878 29 N -0.067 5.067 30 O 0.033 5.967 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.195 0.805 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.238 0.762 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.041 0.959 44 H 0.064 0.936 45 H 0.042 0.958 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.669 -22.823 -5.990 28.325 hybrid contribution 0.800 1.352 0.398 1.621 sum -14.869 -21.471 -5.592 26.708 Atomic orbital electron populations 1.20347 0.83783 1.04753 1.04199 1.24568 0.96499 0.85919 1.03203 1.22457 0.90649 1.01510 1.08043 1.23098 0.97130 0.90146 1.03695 1.20321 0.90495 0.80401 1.02195 1.87942 1.29156 1.14677 1.95609 1.22237 0.88553 0.89419 1.03224 1.20087 0.86242 0.86845 0.77058 1.90735 1.17821 1.83259 1.48051 1.45894 1.09705 1.06408 1.75458 1.20875 0.95606 0.77936 1.02175 1.22522 0.98091 0.92177 1.04228 0.87872 1.24356 1.02325 1.01432 0.90637 0.87988 1.21067 0.87521 0.86470 0.99216 1.45145 1.62993 1.10355 1.13274 1.19055 1.17421 0.84931 1.14115 0.90488 1.24896 0.97841 0.97250 1.00286 1.69906 1.34789 1.24401 1.27125 0.86042 0.78279 0.82764 0.78643 1.20328 1.21602 1.21675 1.21082 0.90362 0.95687 0.90043 1.23841 1.00336 0.91442 1.02909 0.87751 1.73783 0.97416 1.15258 1.20245 1.84802 1.11026 1.33204 1.67697 0.89345 0.89831 0.88828 0.80452 0.90573 0.90524 0.89749 0.89630 0.76191 0.91252 0.91151 0.89248 0.95924 0.93614 0.95828 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.45 36.01 0.38 0.10 16 2 C -0.04 -0.31 7.49 -35.30 -0.26 -0.57 16 3 C -0.21 -1.97 10.45 -39.39 -0.41 -2.38 16 4 C 0.02 0.18 7.28 -82.10 -0.60 -0.42 16 5 C 0.14 1.20 6.56 36.00 0.24 1.44 16 6 O -0.36 -3.73 9.37 -55.14 -0.52 -4.25 16 7 C 0.05 0.37 6.42 36.01 0.23 0.60 16 8 C 0.51 6.07 7.91 -10.99 -0.09 5.98 16 9 O -0.52 -8.55 16.50 -14.35 -0.24 -8.79 16 10 N -0.72 -7.62 5.56 -60.29 -0.33 -7.95 16 11 C 0.16 1.99 5.95 -4.04 -0.02 1.97 16 12 C -0.15 -2.17 5.40 -90.62 -0.49 -2.66 16 13 H 0.10 1.45 8.04 -51.93 -0.42 1.03 16 14 C -0.17 -3.03 6.74 -89.30 -0.60 -3.63 16 15 H 0.10 1.78 8.12 -51.93 -0.42 1.35 16 16 C 0.18 4.24 5.70 -2.41 -0.01 4.23 16 17 N -0.59 -14.93 3.37 -169.12 -0.57 -15.50 16 18 C -0.23 -6.24 10.35 -15.06 -0.16 -6.40 16 19 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 20 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 21 N -0.92 -26.37 10.86 55.49 0.60 -25.77 16 22 Si 0.91 21.66 29.56 -169.99 -5.03 16.64 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.15 3.15 7.02 -2.59 -0.02 3.13 16 27 C -0.16 -2.80 6.85 -89.30 -0.61 -3.41 16 28 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 29 N -0.36 -4.01 12.07 33.42 0.40 -3.61 16 30 O 0.10 0.99 11.20 17.17 0.19 1.18 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.18 1.67 8.05 -52.49 -0.42 1.25 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.40 3.22 8.40 -40.82 -0.34 2.87 16 40 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 2.35 6.51 -51.93 -0.34 2.01 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 390.69 15.07 5.89 5.89 Total: -1.00 -34.75 390.69 -9.10 -43.85 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.97 Total: 0.60 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.53 Total: -2.28 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.10 Total: -52.83 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.56 Total: -11.86 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.75 -9.10 -43.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282862364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.706 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds