Wall clock time and date at job start Tue Mar 31 2020 18:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35450 * 126.77708 * 2 1 4 4 C 1.41372 * 103.98739 * 180.02562 * 3 2 1 5 5 C 1.50694 * 126.80407 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47245 * 0.02562 * 5 4 3 7 7 C 1.42895 * 114.00345 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47290 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99981 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00204 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00275 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47060 * 179.97438 * 11 10 8 13 13 H 1.09002 * 115.51732 * 29.41802 * 12 11 10 14 14 C 1.52998 * 117.44387 * 244.00023 * 12 11 10 15 15 H 1.08998 * 119.53858 * 4.16402 * 14 12 11 16 16 C 1.54382 * 118.12429 * 160.85575 * 14 12 11 17 17 N 1.48149 * 104.61815 * 87.19216 * 16 14 12 18 18 C 1.36932 * 127.84199 * 140.41203 * 17 16 14 19 19 H 1.08002 * 120.00310 * 195.57697 * 18 17 16 20 20 C 1.38820 * 120.00042 * 15.56858 * 18 17 16 21 21 N 1.31622 * 119.99441 * 9.11018 * 20 18 17 22 22 Si 1.86794 * 120.00203 * 189.10417 * 20 18 17 23 23 H 1.48498 * 109.47468 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46993 * 120.00396 * 22 20 18 25 25 H 1.48506 * 109.47008 * 240.00118 * 22 20 18 26 26 C 1.47829 * 104.29602 * 320.40830 * 17 16 14 27 27 C 1.53001 * 117.44142 * 174.83145 * 12 11 10 28 28 H 1.09004 * 119.53710 * 355.84016 * 27 12 11 29 29 N 1.30183 * 106.39548 * 0.26889 * 4 3 2 30 30 O 1.20918 * 111.60174 * 359.52863 * 29 4 3 31 31 H 1.09003 * 109.47211 * 89.99608 * 1 2 3 32 32 H 1.08998 * 109.47000 * 209.99119 * 1 2 3 33 33 H 1.09000 * 109.47137 * 329.99399 * 1 2 3 34 34 H 1.07999 * 128.00595 * 0.06630 * 3 2 1 35 35 H 1.09005 * 109.47308 * 240.00600 * 5 4 3 36 36 H 1.09002 * 109.47359 * 120.00191 * 5 4 3 37 37 H 1.08999 * 109.47480 * 60.00003 * 7 6 5 38 38 H 1.09000 * 109.47337 * 299.99795 * 7 6 5 39 39 H 0.97009 * 120.00021 * 0.02562 * 10 8 7 40 40 H 1.09000 * 109.47216 * 60.00213 * 11 10 8 41 41 H 1.08997 * 109.47126 * 300.00126 * 11 10 8 42 42 H 1.09001 * 110.41022 * 205.97651 * 16 14 12 43 43 H 1.09004 * 110.40691 * 328.41059 * 16 14 12 44 44 H 0.97002 * 119.99889 * 180.02562 * 21 20 18 45 45 H 1.09001 * 110.42625 * 280.76818 * 26 17 16 46 46 H 1.09004 * 110.31600 * 158.39273 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5373 -0.0006 5 6 4.9210 1.3000 -0.0003 6 8 4.6500 2.7031 0.0013 7 6 5.8214 3.5214 0.0011 8 6 5.4196 4.9738 0.0022 9 8 4.2456 5.2782 0.0036 10 7 6.3648 5.9346 0.0028 11 6 5.9742 7.3465 0.0044 12 6 7.2285 8.2227 0.0054 13 1 8.1041 7.7897 -0.4783 14 6 7.4658 9.1130 1.2268 15 1 6.7870 9.0505 2.0774 16 6 8.8931 9.6485 1.4708 17 7 8.9608 10.9033 0.6861 18 6 9.5594 12.0833 1.0388 19 1 9.3271 12.9892 0.4986 20 6 10.4646 12.1152 2.0908 21 7 10.8841 10.9913 2.6321 22 14 11.0872 13.7532 2.7378 23 1 10.4671 14.8590 1.9647 24 1 10.7254 13.8887 4.1717 25 1 12.5638 13.8139 2.5920 26 6 8.2356 10.5918 -0.5638 27 6 7.0321 9.7352 -0.1152 28 1 6.0299 10.1367 -0.2654 29 7 3.4764 -0.7564 -0.0068 30 8 2.3095 -1.0736 -0.0007 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5137 33 1 -0.3633 0.8899 0.5139 34 1 2.0345 2.1270 0.0010 35 1 5.4943 1.0414 -0.8907 36 1 5.4947 1.0401 0.8893 37 1 6.4128 3.3092 -0.8896 38 1 6.4143 3.3074 0.8904 39 1 7.3038 5.6911 0.0021 40 1 5.3825 7.5588 0.8949 41 1 5.3816 7.5606 -0.8850 42 1 9.0460 9.8540 2.5302 43 1 9.6337 8.9345 1.1104 44 1 11.5164 11.0135 3.3675 45 1 8.8733 10.0255 -1.2426 46 1 7.8920 11.5098 -1.0408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282862364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:15 Heat of formation + Delta-G solvation = 21.179121 kcal Electronic energy + Delta-G solvation = -27036.675833 eV Core-core repulsion = 22931.140495 eV Total energy + Delta-G solvation = -4105.535338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.97042 -41.00604 -40.27129 -38.80681 -36.33246 -35.27523 -34.99943 -34.27782 -32.78015 -30.47700 -28.93494 -28.73329 -28.55955 -27.52103 -26.03442 -23.95480 -22.88040 -22.00885 -21.48394 -21.00361 -20.78037 -18.85465 -18.77555 -18.53176 -18.11470 -17.72911 -17.39627 -16.86843 -16.48620 -16.11772 -16.02675 -15.70899 -15.27359 -15.06310 -14.65744 -14.53668 -14.47772 -14.33727 -14.08544 -13.97343 -13.50706 -13.31813 -13.24796 -13.18367 -12.89311 -12.88123 -12.74913 -12.31140 -12.16427 -11.96101 -11.91315 -11.75724 -11.41859 -11.06213 -10.93247 -10.67794 -10.64757 -10.55502 -10.27571 -10.05437 -8.90302 -7.92538 -5.28253 0.44558 1.17143 1.46126 1.47049 1.56946 1.57721 1.61733 2.16926 2.46681 2.55596 2.78694 3.26168 3.40117 3.60990 3.65781 3.71070 3.77494 3.85871 4.06123 4.15458 4.21162 4.22765 4.28704 4.29277 4.36348 4.42395 4.44545 4.48352 4.56029 4.69392 4.72427 4.73899 4.89349 4.93988 4.98373 5.03403 5.20724 5.23674 5.36010 5.44178 5.46215 5.54673 5.67428 5.87781 6.18687 6.54440 7.01651 7.19889 7.21480 7.68720 8.46616 9.21338 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035539 B = 0.001470 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.673323 B =19047.998262 C =19346.993774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.024 4.024 3 C -0.233 4.233 4 C 0.006 3.994 5 C 0.144 3.856 6 O -0.384 6.384 7 C 0.047 3.953 8 C 0.511 3.489 9 O -0.575 6.575 10 N -0.711 5.711 11 C 0.165 3.835 12 C -0.106 4.106 13 H 0.114 0.886 14 C -0.180 4.180 15 H 0.109 0.891 16 C 0.189 3.811 17 N -0.621 5.621 18 C -0.241 4.241 19 H 0.080 0.920 20 C -0.061 4.061 21 N -0.946 5.946 22 Si 0.978 3.022 23 H -0.265 1.265 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.149 3.851 27 C -0.160 4.160 28 H 0.125 0.875 29 N -0.386 5.386 30 O 0.089 5.911 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.174 0.826 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.419 0.581 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.006 0.994 44 H 0.250 0.750 45 H 0.028 0.972 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.563 -23.114 -7.108 29.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.254 4.254 4 C -0.152 4.152 5 C 0.067 3.933 6 O -0.303 6.303 7 C -0.032 4.032 8 C 0.298 3.702 9 O -0.454 6.454 10 N -0.365 5.365 11 C 0.041 3.959 12 C -0.125 4.125 13 H 0.132 0.868 14 C -0.199 4.199 15 H 0.127 0.873 16 C 0.063 3.937 17 N -0.346 5.346 18 C -0.370 4.370 19 H 0.097 0.903 20 C -0.255 4.255 21 N -0.594 5.594 22 Si 0.806 3.194 23 H -0.190 1.190 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.024 3.976 27 C -0.180 4.180 28 H 0.143 0.857 29 N -0.094 5.094 30 O 0.024 5.976 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.191 0.809 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.256 0.744 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.024 0.976 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.554 -23.688 -6.975 29.729 hybrid contribution 1.040 1.604 0.645 2.017 sum -15.514 -22.085 -6.329 27.721 Atomic orbital electron populations 1.20589 0.80809 1.06094 1.05596 1.25244 0.97966 0.84920 1.00619 1.22554 0.91046 1.01805 1.10021 1.23548 0.98349 0.90247 1.03081 1.20466 0.89815 0.79299 1.03763 1.87899 1.30717 1.15715 1.95943 1.22375 0.88199 0.86444 1.06146 1.20762 0.85463 0.88418 0.75600 1.90717 1.19964 1.84197 1.50500 1.45760 1.10554 1.05434 1.74770 1.20669 0.94279 0.78855 1.02110 1.22421 0.99011 0.90941 1.00140 0.86825 1.24036 0.99170 1.04639 0.92103 0.87324 1.20813 0.90270 0.85931 0.96679 1.45470 1.63387 1.10208 1.15493 1.19418 1.17298 0.86163 1.14099 0.90259 1.25706 0.98527 1.00469 1.00812 1.70090 1.35477 1.26308 1.27534 0.85025 0.77397 0.79284 0.77691 1.18967 1.21840 1.21760 1.21230 0.91128 0.96723 0.88525 1.23773 0.99847 0.92964 1.01416 0.85702 1.73763 0.98097 1.15688 1.21842 1.84764 1.11045 1.33857 1.67915 0.87733 0.88229 0.87696 0.80856 0.88763 0.88963 0.86424 0.86798 0.74391 0.92078 0.90599 0.93110 0.97629 0.94131 0.95418 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.45 71.24 0.74 0.32 16 2 C -0.02 -0.37 7.49 25.04 0.19 -0.18 16 3 C -0.23 -4.43 10.45 22.40 0.23 -4.20 16 4 C 0.01 0.11 7.28 43.57 0.32 0.43 16 5 C 0.14 2.18 6.56 71.23 0.47 2.64 16 6 O -0.38 -7.44 9.37 -129.94 -1.22 -8.66 16 7 C 0.05 0.63 6.42 71.24 0.46 1.09 16 8 C 0.51 11.01 7.91 87.66 0.69 11.71 16 9 O -0.57 -18.30 16.50 16.00 0.26 -18.03 16 10 N -0.71 -13.07 5.56 -463.06 -2.57 -15.64 16 11 C 0.16 3.76 5.95 86.38 0.51 4.27 16 12 C -0.11 -2.79 5.40 -10.79 -0.06 -2.85 16 13 H 0.11 2.85 8.04 -2.39 -0.02 2.83 16 14 C -0.18 -6.34 6.74 -9.94 -0.07 -6.40 16 15 H 0.11 3.70 8.12 -2.39 -0.02 3.68 16 16 C 0.19 8.94 5.70 86.53 0.49 9.43 16 17 N -0.62 -31.54 3.37 -688.97 -2.32 -33.86 16 18 C -0.24 -13.41 10.35 84.04 0.87 -12.54 16 19 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 20 C -0.06 -3.45 5.40 84.86 0.46 -2.99 16 21 N -0.95 -56.07 10.86 21.65 0.24 -55.83 16 22 Si 0.98 45.09 29.56 68.60 2.03 47.12 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 25 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 26 C 0.15 5.93 7.02 86.59 0.61 6.54 16 27 C -0.16 -5.12 6.85 -9.94 -0.07 -5.19 16 28 H 0.13 3.54 8.14 -2.39 -0.02 3.52 16 29 N -0.39 -8.45 12.07 -49.56 -0.60 -9.05 16 30 O 0.09 1.72 11.20 71.63 0.80 2.52 16 31 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.17 3.35 8.05 -2.91 -0.02 3.33 16 35 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 37 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.11 0.89 8.14 -2.39 -0.02 0.88 16 39 H 0.42 5.24 8.40 -92.70 -0.78 4.46 16 40 H 0.06 1.56 7.93 -2.39 -0.02 1.54 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.05 2.77 6.51 -2.39 -0.02 2.76 16 43 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 45 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -78.48 390.69 2.69 -75.79 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.22 Total: 13.57 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 5.85 Total: 2.08 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -5.26 Total: -114.38 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.15 Total: -24.17 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -78.48 2.69 -75.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282862364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.971 kcal (2) G-P(sol) polarization free energy of solvation -78.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds