Wall clock time and date at job start Tue Mar 31 2020 19:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34863 * 119.10054 * 2 1 4 4 C 1.41673 * 119.34275 * 179.97438 * 3 2 1 5 5 O 1.22078 * 121.07256 * 180.02562 * 4 3 2 6 6 C 1.47098 * 117.85949 * 0.02562 * 4 3 2 7 7 C 1.47290 * 120.88327 * 180.02562 * 6 4 3 8 8 O 1.21623 * 119.99556 * 314.86625 * 7 6 4 9 9 N 1.34774 * 120.00152 * 134.86857 * 7 6 4 10 10 C 1.47147 * 120.98252 * 354.53638 * 9 7 6 11 11 C 1.53300 * 108.38106 * 230.55571 * 10 9 7 12 12 O 1.42958 * 109.22377 * 307.69566 * 11 10 9 13 13 C 1.42965 * 114.16618 * 62.58103 * 12 11 10 14 14 H 1.08997 * 109.55110 * 57.37016 * 13 12 11 15 15 C 1.53000 * 109.51206 * 177.49480 * 13 12 11 16 16 H 1.08996 * 109.47015 * 184.74563 * 15 13 12 17 17 C 1.53002 * 109.47223 * 304.74921 * 15 13 12 18 18 N 1.46495 * 109.47084 * 64.74643 * 15 13 12 19 19 C 1.36941 * 120.00014 * 154.99851 * 18 15 13 20 20 H 1.07992 * 119.99792 * 0.02562 * 19 18 15 21 21 C 1.38810 * 119.99972 * 180.27587 * 19 18 15 22 22 N 1.31622 * 120.00078 * 359.72759 * 21 19 18 23 23 Si 1.86797 * 120.00153 * 179.72536 * 21 19 18 24 24 H 1.48499 * 109.47444 * 89.99854 * 23 21 19 25 25 H 1.48502 * 109.47476 * 210.00125 * 23 21 19 26 26 H 1.48503 * 109.46953 * 330.00350 * 23 21 19 27 27 C 1.47152 * 120.97968 * 174.55498 * 9 7 6 28 28 C 1.37995 * 118.23587 * 0.27294 * 6 4 3 29 29 N 1.34340 * 120.37349 * 359.44528 * 28 6 4 30 30 H 0.96994 * 118.80976 * 180.26933 * 29 28 6 31 31 H 1.08998 * 109.47197 * 90.00143 * 1 2 3 32 32 H 1.08995 * 109.46851 * 209.99995 * 1 2 3 33 33 H 1.08999 * 109.47036 * 329.99704 * 1 2 3 34 34 H 1.08002 * 120.33076 * 359.95538 * 3 2 1 35 35 H 1.08997 * 109.68181 * 350.27511 * 10 9 7 36 36 H 1.08998 * 109.68724 * 110.83230 * 10 9 7 37 37 H 1.08997 * 109.51559 * 67.62251 * 11 10 9 38 38 H 1.09004 * 109.51115 * 187.77490 * 11 10 9 39 39 H 1.09000 * 109.46933 * 59.99847 * 17 15 13 40 40 H 1.08999 * 109.47164 * 179.97438 * 17 15 13 41 41 H 1.09005 * 109.46922 * 300.00004 * 17 15 13 42 42 H 0.97002 * 120.00132 * 334.99854 * 18 15 13 43 43 H 0.97006 * 119.99867 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.68721 * 9.72060 * 27 9 7 45 45 H 1.09001 * 109.71514 * 249.18388 * 27 9 7 46 46 H 1.08003 * 119.81173 * 179.70687 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1844 0.0006 5 8 4.2053 2.2326 0.0010 6 6 4.2725 -0.1132 0.0005 7 6 5.7437 -0.1847 0.0016 8 8 6.3876 0.5284 -0.7441 9 7 6.3762 -1.0402 0.8290 10 6 5.6276 -1.8259 1.8227 11 6 6.3022 -1.6475 3.1877 12 8 7.6961 -1.9407 3.0658 13 6 8.4028 -1.0671 2.1818 14 1 8.2837 -0.0363 2.5154 15 6 9.8879 -1.4350 2.1791 16 1 10.4389 -0.7171 1.5715 17 6 10.4229 -1.4071 3.6123 18 7 10.0571 -2.7788 1.6208 19 6 11.2467 -3.1359 1.0441 20 1 12.0602 -2.4269 1.0012 21 6 11.4050 -4.4073 0.5100 22 7 10.4136 -5.2714 0.5627 23 14 13.0251 -4.8918 -0.2836 24 1 13.9223 -5.4814 0.7425 25 1 12.7732 -5.8905 -1.3535 26 1 13.6680 -3.6888 -0.8708 27 6 7.8358 -1.2158 0.7654 28 6 3.5076 -1.2617 -0.0058 29 7 2.1664 -1.1847 -0.0006 30 1 1.6511 -2.0064 -0.0012 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6136 2.1083 -0.0007 35 1 4.5986 -1.4701 1.8725 36 1 5.6392 -2.8792 1.5424 37 1 6.1747 -0.6190 3.5253 38 1 5.8490 -2.3272 3.9094 39 1 9.8719 -2.1250 4.2198 40 1 11.4808 -1.6696 3.6103 41 1 10.2970 -0.4072 4.0277 42 1 9.3265 -3.4157 1.6597 43 1 10.5245 -6.1601 0.1898 44 1 8.2691 -0.4560 0.1150 45 1 8.0704 -2.2074 0.3783 46 1 3.9900 -2.2281 -0.0108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282926219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:15 Heat of formation + Delta-G solvation = -56.740776 kcal Electronic energy + Delta-G solvation = -29713.556971 eV Core-core repulsion = 25604.642773 eV Total energy + Delta-G solvation = -4108.914199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.37338 -39.88431 -38.29098 -37.62468 -35.46314 -34.50061 -33.61599 -32.26944 -31.64523 -30.15619 -28.77437 -28.33923 -27.26976 -24.46875 -24.10568 -23.45063 -22.64999 -22.17915 -20.29295 -19.61195 -18.27148 -17.94005 -17.27780 -16.80057 -16.31425 -16.19818 -15.74546 -15.44954 -15.21271 -14.74042 -14.57798 -14.46806 -14.15125 -13.81404 -13.72596 -13.39080 -13.35139 -13.27136 -13.09225 -13.02699 -12.85338 -12.51186 -12.32830 -11.89371 -11.77639 -11.31880 -11.14113 -10.80285 -10.75129 -10.40709 -10.24098 -10.03620 -9.90738 -9.82983 -9.70148 -9.53085 -9.35831 -8.88569 -8.39115 -8.21369 -6.89051 -5.71590 -2.99182 0.64743 0.99368 2.28028 2.81772 3.04736 3.47440 3.53074 3.54287 3.57410 3.83993 4.02404 4.18154 4.30391 4.50523 4.63826 4.71065 4.77942 4.88194 4.92064 4.99626 5.15229 5.17646 5.31598 5.40495 5.45479 5.50962 5.57636 5.64210 5.72777 5.80503 5.91118 6.00718 6.13766 6.29262 6.33950 6.43924 6.45855 6.49087 6.67916 6.74074 6.85502 7.20034 7.51362 7.54112 7.76161 7.94321 8.37104 8.47108 9.59412 10.16244 10.53668 11.50904 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.002836 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.760439 B = 9870.918915 C =10150.949504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.156 3.844 3 C -0.271 4.271 4 C 0.411 3.589 5 O -0.491 6.491 6 C -0.291 4.291 7 C 0.579 3.421 8 O -0.518 6.518 9 N -0.613 5.613 10 C 0.067 3.933 11 C 0.048 3.952 12 O -0.359 6.359 13 C 0.077 3.923 14 H 0.056 0.944 15 C 0.182 3.818 16 H 0.061 0.939 17 C -0.159 4.159 18 N -0.717 5.717 19 C -0.235 4.235 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.291 1.291 25 H -0.293 1.293 26 H -0.282 1.282 27 C 0.088 3.912 28 C 0.167 3.833 29 N -0.579 5.579 30 H 0.421 0.579 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.152 0.848 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.033 0.967 42 H 0.389 0.611 43 H 0.253 0.747 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.735 5.560 3.055 26.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.049 3.951 3 C -0.295 4.295 4 C 0.297 3.703 5 O -0.373 6.373 6 C -0.302 4.302 7 C 0.367 3.633 8 O -0.393 6.393 9 N -0.348 5.348 10 C -0.056 4.056 11 C -0.030 4.030 12 O -0.277 6.277 13 C 0.018 3.982 14 H 0.074 0.926 15 C 0.071 3.929 16 H 0.079 0.921 17 C -0.219 4.219 18 N -0.360 5.360 19 C -0.366 4.366 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.736 3.264 24 H -0.219 1.219 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.033 4.033 28 C 0.036 3.964 29 N -0.186 5.186 30 H 0.258 0.742 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.170 0.830 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.223 0.777 43 H 0.063 0.937 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -24.778 6.399 2.642 25.727 hybrid contribution 0.201 -0.945 -0.493 1.085 sum -24.577 5.453 2.149 25.266 Atomic orbital electron populations 1.21101 0.87841 1.04922 1.04404 1.20292 0.94816 0.85521 0.94441 1.22210 0.96087 0.97391 1.13838 1.18161 0.88385 0.87664 0.76053 1.90812 1.70080 1.33418 1.42966 1.22458 0.94604 0.95270 1.17873 1.17500 0.85965 0.79463 0.80391 1.90812 1.66854 1.41125 1.40469 1.48154 1.08638 1.42182 1.35819 1.22599 0.96260 0.96741 0.90026 1.22858 0.83819 1.00935 0.95394 1.88093 1.18498 1.55971 1.65173 1.22923 0.94120 0.92826 0.88331 0.92618 1.20270 0.88813 0.89940 0.93828 0.92147 1.22320 1.01484 0.99290 0.98817 1.42403 1.15216 1.09482 1.68879 1.19259 0.91421 0.96732 1.29221 0.91182 1.24700 0.97631 0.96618 1.01975 1.69672 1.30930 1.06087 1.51412 0.86220 0.83456 0.77963 0.78751 1.21863 1.21926 1.20781 1.22438 0.77348 1.05133 0.98414 1.22279 0.82417 1.00206 0.91484 1.40724 1.05864 1.08980 1.62987 0.74216 0.89197 0.90389 0.88734 0.83036 0.89711 0.90139 0.93236 0.88095 0.92511 0.92842 0.94835 0.77659 0.93699 0.88456 0.88280 0.80838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.15 10.03 36.01 0.36 0.21 16 2 C 0.16 0.81 6.79 -82.13 -0.56 0.25 16 3 C -0.27 -2.55 9.57 -39.47 -0.38 -2.93 16 4 C 0.41 6.11 6.95 -34.68 -0.24 5.87 16 5 O -0.49 -9.84 17.20 -0.67 -0.01 -9.85 16 6 C -0.29 -3.88 5.10 -102.71 -0.52 -4.40 16 7 C 0.58 10.12 7.14 -12.58 -0.09 10.03 16 8 O -0.52 -11.54 16.11 -0.26 0.00 -11.55 16 9 N -0.61 -9.63 3.02 -173.60 -0.52 -10.16 16 10 C 0.07 0.77 5.25 -3.53 -0.02 0.75 16 11 C 0.05 0.60 6.98 37.31 0.26 0.86 16 12 O -0.36 -6.15 9.24 -35.23 -0.33 -6.47 16 13 C 0.08 1.39 2.57 -26.58 -0.07 1.32 16 14 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 15 C 0.18 3.73 2.80 -67.93 -0.19 3.54 16 16 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 17 C -0.16 -3.04 9.30 37.16 0.35 -2.69 16 18 N -0.72 -17.80 4.24 -53.43 -0.23 -18.03 16 19 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 23 Si 0.90 22.56 29.55 -169.99 -5.02 17.54 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.09 1.64 5.84 -3.53 -0.02 1.62 16 28 C 0.17 1.24 8.73 -16.54 -0.14 1.10 16 29 N -0.58 -2.31 5.16 -9.00 -0.05 -2.35 16 30 H 0.42 -0.05 8.70 -40.82 -0.35 -0.40 16 31 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 32 H 0.08 -0.05 8.12 -51.93 -0.42 -0.47 16 33 H 0.09 0.09 8.05 -51.93 -0.42 -0.33 16 34 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.08 0.72 5.24 -51.93 -0.27 0.45 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.12 7.57 -51.93 -0.39 0.73 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.39 10.29 7.08 -40.82 -0.29 10.00 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.10 1.96 7.06 -51.93 -0.37 1.59 16 45 H 0.10 2.07 6.94 -51.93 -0.36 1.71 16 46 H 0.17 0.91 7.08 -52.48 -0.37 0.54 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -40.29 376.48 -7.87 -48.16 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.59 Total: 5.76 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -1.51 Total: 8.40 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.07 Total: -57.66 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.34 Total: -27.87 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -40.29 -7.87 -48.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282926219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.585 kcal (2) G-P(sol) polarization free energy of solvation -40.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds