Wall clock time and date at job start Tue Mar 31 2020 19:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34863 * 119.10054 * 2 1 4 4 C 1.41673 * 119.34275 * 179.97438 * 3 2 1 5 5 O 1.22078 * 121.07256 * 180.02562 * 4 3 2 6 6 C 1.47098 * 117.85949 * 0.02562 * 4 3 2 7 7 C 1.47290 * 120.88327 * 180.02562 * 6 4 3 8 8 O 1.21623 * 119.99556 * 314.86625 * 7 6 4 9 9 N 1.34774 * 120.00152 * 134.86857 * 7 6 4 10 10 C 1.47147 * 120.98252 * 354.53638 * 9 7 6 11 11 C 1.53300 * 108.38106 * 230.55571 * 10 9 7 12 12 O 1.42958 * 109.22377 * 307.69566 * 11 10 9 13 13 C 1.42965 * 114.16618 * 62.58103 * 12 11 10 14 14 H 1.08997 * 109.55110 * 57.37016 * 13 12 11 15 15 C 1.53000 * 109.51206 * 177.49480 * 13 12 11 16 16 H 1.08996 * 109.47015 * 184.74563 * 15 13 12 17 17 C 1.53002 * 109.47223 * 304.74921 * 15 13 12 18 18 N 1.46495 * 109.47084 * 64.74643 * 15 13 12 19 19 C 1.36941 * 120.00014 * 154.99851 * 18 15 13 20 20 H 1.07992 * 119.99792 * 0.02562 * 19 18 15 21 21 C 1.38810 * 119.99972 * 180.27587 * 19 18 15 22 22 N 1.31622 * 120.00078 * 359.72759 * 21 19 18 23 23 Si 1.86797 * 120.00153 * 179.72536 * 21 19 18 24 24 H 1.48499 * 109.47444 * 89.99854 * 23 21 19 25 25 H 1.48502 * 109.47476 * 210.00125 * 23 21 19 26 26 H 1.48503 * 109.46953 * 330.00350 * 23 21 19 27 27 C 1.47152 * 120.97968 * 174.55498 * 9 7 6 28 28 C 1.37995 * 118.23587 * 0.27294 * 6 4 3 29 29 N 1.34340 * 120.37349 * 359.44528 * 28 6 4 30 30 H 0.96994 * 118.80976 * 180.26933 * 29 28 6 31 31 H 1.08998 * 109.47197 * 90.00143 * 1 2 3 32 32 H 1.08995 * 109.46851 * 209.99995 * 1 2 3 33 33 H 1.08999 * 109.47036 * 329.99704 * 1 2 3 34 34 H 1.08002 * 120.33076 * 359.95538 * 3 2 1 35 35 H 1.08997 * 109.68181 * 350.27511 * 10 9 7 36 36 H 1.08998 * 109.68724 * 110.83230 * 10 9 7 37 37 H 1.08997 * 109.51559 * 67.62251 * 11 10 9 38 38 H 1.09004 * 109.51115 * 187.77490 * 11 10 9 39 39 H 1.09000 * 109.46933 * 59.99847 * 17 15 13 40 40 H 1.08999 * 109.47164 * 179.97438 * 17 15 13 41 41 H 1.09005 * 109.46922 * 300.00004 * 17 15 13 42 42 H 0.97002 * 120.00132 * 334.99854 * 18 15 13 43 43 H 0.97006 * 119.99867 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.68721 * 9.72060 * 27 9 7 45 45 H 1.09001 * 109.71514 * 249.18388 * 27 9 7 46 46 H 1.08003 * 119.81173 * 179.70687 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1844 0.0006 5 8 4.2053 2.2326 0.0010 6 6 4.2725 -0.1132 0.0005 7 6 5.7437 -0.1847 0.0016 8 8 6.3876 0.5284 -0.7441 9 7 6.3762 -1.0402 0.8290 10 6 5.6276 -1.8259 1.8227 11 6 6.3022 -1.6475 3.1877 12 8 7.6961 -1.9407 3.0658 13 6 8.4028 -1.0671 2.1818 14 1 8.2837 -0.0363 2.5154 15 6 9.8879 -1.4350 2.1791 16 1 10.4389 -0.7171 1.5715 17 6 10.4229 -1.4071 3.6123 18 7 10.0571 -2.7788 1.6208 19 6 11.2467 -3.1359 1.0441 20 1 12.0602 -2.4269 1.0012 21 6 11.4050 -4.4073 0.5100 22 7 10.4136 -5.2714 0.5627 23 14 13.0251 -4.8918 -0.2836 24 1 13.9223 -5.4814 0.7425 25 1 12.7732 -5.8905 -1.3535 26 1 13.6680 -3.6888 -0.8708 27 6 7.8358 -1.2158 0.7654 28 6 3.5076 -1.2617 -0.0058 29 7 2.1664 -1.1847 -0.0006 30 1 1.6511 -2.0064 -0.0012 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6136 2.1083 -0.0007 35 1 4.5986 -1.4701 1.8725 36 1 5.6392 -2.8792 1.5424 37 1 6.1747 -0.6190 3.5253 38 1 5.8490 -2.3272 3.9094 39 1 9.8719 -2.1250 4.2198 40 1 11.4808 -1.6696 3.6103 41 1 10.2970 -0.4072 4.0277 42 1 9.3265 -3.4157 1.6597 43 1 10.5245 -6.1601 0.1898 44 1 8.2691 -0.4560 0.1150 45 1 8.0704 -2.2074 0.3783 46 1 3.9900 -2.2281 -0.0108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282926219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:15 Heat of formation + Delta-G solvation = -88.695660 kcal Electronic energy + Delta-G solvation = -29714.942639 eV Core-core repulsion = 25604.642773 eV Total energy + Delta-G solvation = -4110.299867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22245 -41.06653 -39.53911 -38.75122 -37.11327 -35.85497 -34.33258 -34.08403 -32.60680 -31.58666 -30.14839 -29.50577 -28.32166 -25.91636 -25.20983 -25.04320 -23.69701 -23.07976 -21.48248 -21.06770 -19.47641 -19.11468 -18.76745 -17.69893 -17.57946 -17.27188 -16.97675 -16.70525 -16.29080 -16.09474 -15.96081 -15.60627 -15.52937 -15.08202 -14.98943 -14.64863 -14.52072 -14.21009 -14.04799 -13.91932 -13.69131 -13.55097 -13.44217 -13.11046 -13.03125 -12.94863 -12.76789 -12.55236 -12.48648 -12.17837 -11.81787 -11.69531 -11.55534 -11.21596 -11.06389 -10.93593 -10.49322 -10.41642 -9.62835 -9.21782 -8.93833 -7.89092 -5.15749 -0.15796 0.29077 1.48959 1.49611 1.56376 1.57785 1.68564 1.92310 2.58699 2.62560 2.77548 3.32678 3.44290 3.44730 3.62818 3.68673 3.90909 3.92448 3.93798 4.00497 4.11460 4.15532 4.29299 4.30132 4.38624 4.52828 4.61990 4.73726 4.75744 4.77472 4.81415 4.83314 4.83927 5.00090 5.09605 5.19941 5.21709 5.25242 5.37094 5.55253 5.60020 5.66818 6.08357 6.23223 6.31437 6.33231 7.00782 7.10503 7.40514 8.13924 8.42072 9.34004 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.002836 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.760439 B = 9870.918915 C =10150.949504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.198 3.802 3 C -0.303 4.303 4 C 0.388 3.612 5 O -0.579 6.579 6 C -0.346 4.346 7 C 0.574 3.426 8 O -0.586 6.586 9 N -0.610 5.610 10 C 0.065 3.935 11 C 0.039 3.961 12 O -0.377 6.377 13 C 0.093 3.907 14 H 0.063 0.937 15 C 0.174 3.826 16 H 0.053 0.947 17 C -0.146 4.146 18 N -0.723 5.723 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.071 4.071 22 N -0.964 5.964 23 Si 0.966 3.034 24 H -0.288 1.288 25 H -0.296 1.296 26 H -0.275 1.275 27 C 0.098 3.902 28 C 0.220 3.780 29 N -0.545 5.545 30 H 0.452 0.548 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.157 0.843 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.051 0.949 38 H 0.139 0.861 39 H 0.050 0.950 40 H 0.039 0.961 41 H 0.062 0.938 42 H 0.379 0.621 43 H 0.249 0.751 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.614 3.343 4.180 30.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.088 3.912 3 C -0.326 4.326 4 C 0.283 3.717 5 O -0.469 6.469 6 C -0.356 4.356 7 C 0.364 3.636 8 O -0.466 6.466 9 N -0.343 5.343 10 C -0.056 4.056 11 C -0.038 4.038 12 O -0.296 6.296 13 C 0.034 3.966 14 H 0.081 0.919 15 C 0.065 3.935 16 H 0.071 0.929 17 C -0.206 4.206 18 N -0.364 5.364 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.264 4.264 22 N -0.614 5.614 23 Si 0.796 3.204 24 H -0.215 1.215 25 H -0.223 1.223 26 H -0.200 1.200 27 C -0.025 4.025 28 C 0.086 3.914 29 N -0.152 5.152 30 H 0.295 0.705 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.174 0.826 35 H 0.138 0.862 36 H 0.116 0.884 37 H 0.069 0.931 38 H 0.156 0.844 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.213 0.787 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -28.749 4.134 3.820 29.295 hybrid contribution 1.163 -0.355 -0.797 1.454 sum -27.586 3.778 3.023 28.007 Atomic orbital electron populations 1.21315 0.83668 1.07036 1.06056 1.20808 0.96891 0.84176 0.89281 1.22062 0.93473 0.99794 1.17276 1.18932 0.90590 0.87255 0.74969 1.90758 1.71880 1.35787 1.48480 1.21991 0.92454 0.96861 1.24328 1.18214 0.87800 0.78307 0.79247 1.90755 1.68719 1.43862 1.43287 1.48206 1.07495 1.42326 1.36318 1.22930 0.97359 0.97147 0.88200 1.23236 0.81517 1.02195 0.96812 1.88051 1.21107 1.55861 1.64559 1.22540 0.92699 0.93183 0.88180 0.91934 1.20451 0.90935 0.87750 0.94352 0.92870 1.22137 1.00229 1.00802 0.97439 1.42448 1.14091 1.10760 1.69144 1.19587 0.92226 0.96706 1.28301 0.91056 1.25417 1.00707 0.96895 1.03372 1.69807 1.32615 1.06174 1.52845 0.85247 0.79973 0.77517 0.77665 1.21549 1.22263 1.20040 1.22030 0.79777 1.02425 0.98289 1.22526 0.83378 0.99372 0.86172 1.40979 1.04916 1.10357 1.58976 0.70534 0.87427 0.86927 0.88056 0.82561 0.86151 0.88356 0.93108 0.84355 0.93106 0.94151 0.91951 0.78748 0.94169 0.91353 0.90872 0.77442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.46 10.03 71.24 0.71 1.17 16 2 C 0.20 1.15 6.79 41.20 0.28 1.43 16 3 C -0.30 -5.41 9.57 22.34 0.21 -5.20 16 4 C 0.39 12.20 6.95 25.45 0.18 12.38 16 5 O -0.58 -25.87 17.20 -0.29 -0.01 -25.88 16 6 C -0.35 -9.18 5.10 -18.63 -0.10 -9.28 16 7 C 0.57 21.16 7.14 86.62 0.62 21.78 16 8 O -0.59 -28.79 16.11 1.17 0.02 -28.77 16 9 N -0.61 -19.53 3.02 -821.39 -2.48 -22.01 16 10 C 0.07 1.33 5.25 86.36 0.45 1.78 16 11 C 0.04 0.89 6.98 72.08 0.50 1.39 16 12 O -0.38 -12.57 9.24 -148.98 -1.38 -13.95 16 13 C 0.09 3.43 2.57 30.69 0.08 3.51 16 14 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 15 C 0.17 7.32 2.80 44.99 0.13 7.45 16 16 H 0.05 2.30 8.08 -2.39 -0.02 2.28 16 17 C -0.15 -5.55 9.30 71.98 0.67 -4.89 16 18 N -0.72 -36.82 4.24 -322.96 -1.37 -38.19 16 19 C -0.24 -13.28 9.93 84.03 0.83 -12.44 16 20 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 21 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 22 N -0.96 -58.44 13.06 21.65 0.28 -58.16 16 23 Si 0.97 47.02 29.55 68.60 2.03 49.04 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 27 C 0.10 3.85 5.84 86.35 0.50 4.35 16 28 C 0.22 2.41 8.73 84.25 0.74 3.15 16 29 N -0.55 -1.16 5.16 -182.38 -0.94 -2.11 16 30 H 0.45 -3.67 8.70 -92.71 -0.81 -4.48 16 31 H 0.11 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H 0.11 -1.05 8.12 -2.39 -0.02 -1.07 16 33 H 0.10 -0.34 8.05 -2.39 -0.02 -0.35 16 34 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 35 H 0.12 1.56 5.24 -2.39 -0.01 1.55 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.14 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.05 1.98 7.57 -2.39 -0.02 1.96 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.38 20.59 7.08 -92.71 -0.66 19.94 16 43 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 44 H 0.07 3.04 7.06 -2.39 -0.02 3.02 16 45 H 0.07 3.24 6.94 -2.39 -0.02 3.22 16 46 H 0.21 1.02 7.08 -2.91 -0.02 1.00 16 Total: -1.00 -100.65 376.48 2.00 -98.65 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -0.44 Total: 18.44 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: 6.28 Total: 22.92 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -4.51 Total: -120.46 kcal Atomic # 8 Polarization: -67.23 SS G_CDS: -1.36 Total: -68.60 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Total: -100.65 2.00 -98.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282926219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.959 kcal (2) G-P(sol) polarization free energy of solvation -100.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds