Wall clock time and date at job start Tue Mar 31 2020 19:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34862 * 119.09999 * 2 1 4 4 C 1.41673 * 119.34019 * 179.97438 * 3 2 1 5 5 O 1.22087 * 121.06865 * 180.02562 * 4 3 2 6 6 C 1.47101 * 117.85764 * 0.02562 * 4 3 2 7 7 C 1.47287 * 120.87739 * 180.02562 * 6 4 3 8 8 O 1.21628 * 120.00197 * 313.97068 * 7 6 4 9 9 N 1.34783 * 120.00212 * 133.97166 * 7 6 4 10 10 C 1.47154 * 120.97984 * 354.42687 * 9 7 6 11 11 C 1.53291 * 108.38422 * 230.51612 * 10 9 7 12 12 O 1.42964 * 109.22305 * 307.69940 * 11 10 9 13 13 C 1.42958 * 114.16918 * 62.57972 * 12 11 10 14 14 H 1.08997 * 109.51155 * 57.34295 * 13 12 11 15 15 C 1.53005 * 109.55501 * 177.47438 * 13 12 11 16 16 H 1.09002 * 109.46968 * 174.77508 * 15 13 12 17 17 C 1.52997 * 109.46936 * 54.77237 * 15 13 12 18 18 N 1.46498 * 109.47009 * 294.77138 * 15 13 12 19 19 C 1.36934 * 120.00308 * 205.00186 * 18 15 13 20 20 H 1.08004 * 119.99720 * 359.97438 * 19 18 15 21 21 C 1.38812 * 120.00410 * 180.02562 * 19 18 15 22 22 N 1.31614 * 119.99730 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99896 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47520 * 90.00166 * 23 21 19 25 25 H 1.48499 * 109.46954 * 209.99902 * 23 21 19 26 26 H 1.48498 * 109.47467 * 329.99659 * 23 21 19 27 27 C 1.47147 * 120.98254 * 174.40824 * 9 7 6 28 28 C 1.37990 * 118.24084 * 0.27041 * 6 4 3 29 29 N 1.34347 * 120.36661 * 359.44207 * 28 6 4 30 30 H 0.97001 * 118.80233 * 180.26577 * 29 28 6 31 31 H 1.09005 * 109.46990 * 89.99959 * 1 2 3 32 32 H 1.09000 * 109.47292 * 210.00260 * 1 2 3 33 33 H 1.09001 * 109.47345 * 330.00251 * 1 2 3 34 34 H 1.07996 * 120.33190 * 359.95264 * 3 2 1 35 35 H 1.08993 * 109.67918 * 110.79272 * 10 9 7 36 36 H 1.09000 * 109.71275 * 350.25157 * 10 9 7 37 37 H 1.09002 * 109.51952 * 67.61867 * 11 10 9 38 38 H 1.08998 * 109.51628 * 187.77758 * 11 10 9 39 39 H 1.09001 * 109.47047 * 299.99684 * 17 15 13 40 40 H 1.08995 * 109.47602 * 60.00365 * 17 15 13 41 41 H 1.09007 * 109.46643 * 180.02562 * 17 15 13 42 42 H 0.97000 * 119.99901 * 24.99904 * 18 15 13 43 43 H 0.97004 * 119.99988 * 180.02562 * 22 21 19 44 44 H 1.09008 * 109.68047 * 249.20853 * 27 9 7 45 45 H 1.08997 * 109.68661 * 9.75679 * 27 9 7 46 46 H 1.08000 * 119.81408 * 179.71189 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0006 5 8 4.2053 2.2327 0.0010 6 6 4.2724 -0.1133 0.0005 7 6 5.7435 -0.1847 0.0016 8 8 6.3871 0.5165 -0.7556 9 7 6.3768 -1.0272 0.8418 10 6 5.6292 -1.7956 1.8499 11 6 6.3071 -1.5963 3.2102 12 8 7.7003 -1.8937 3.0899 13 6 8.4064 -1.0357 2.1904 14 1 8.2889 0.0004 2.5078 15 6 9.8912 -1.4049 2.1899 16 1 10.4123 -0.8137 1.4369 17 6 10.0467 -2.8925 1.8679 18 7 10.4636 -1.1285 3.5098 19 6 11.8044 -0.8811 3.6366 20 1 12.4401 -0.8903 2.7635 21 6 12.3469 -0.6197 4.8873 22 7 11.5723 -0.6091 5.9513 23 14 14.1760 -0.2830 5.0602 24 1 14.4265 1.1741 4.9217 25 1 14.6395 -0.7403 6.3948 26 1 14.9164 -1.0153 4.0015 27 6 7.8359 -1.2062 0.7778 28 6 3.5076 -1.2618 -0.0058 29 7 2.1663 -1.1847 -0.0004 30 1 1.6509 -2.0064 -0.0011 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 1.6137 2.1083 -0.0008 35 1 5.6385 -2.8532 1.5865 36 1 4.6006 -1.4378 1.8965 37 1 6.1821 -0.5622 3.5315 38 1 5.8546 -2.2634 3.9438 39 1 9.5256 -3.4836 2.6210 40 1 9.6209 -3.0982 0.8859 41 1 11.1046 -3.1556 1.8680 42 1 9.8927 -1.1206 4.2940 43 1 11.9512 -0.4260 6.8253 44 1 8.0674 -2.2046 0.4064 45 1 8.2689 -0.4578 0.1142 46 1 3.9899 -2.2281 -0.0107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282926222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:26 Heat of formation + Delta-G solvation = -56.333221 kcal Electronic energy + Delta-G solvation = -29415.735977 eV Core-core repulsion = 25306.839451 eV Total energy + Delta-G solvation = -4108.896526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.46573 -40.01186 -38.37207 -37.70403 -35.49163 -34.54613 -33.71843 -32.47524 -31.70362 -30.26191 -28.84756 -28.33633 -26.95941 -24.79243 -24.41160 -23.39091 -22.71011 -22.20522 -20.43464 -19.59762 -18.39588 -18.03705 -17.19244 -16.86090 -16.46545 -16.26731 -15.75065 -15.63392 -15.10882 -15.06631 -14.77826 -14.37878 -14.29636 -13.91266 -13.80599 -13.46359 -13.40043 -13.28561 -13.17532 -13.01808 -12.81303 -12.62258 -12.47416 -12.15329 -11.95625 -11.29768 -11.08689 -10.80228 -10.67266 -10.48480 -10.24128 -10.13597 -9.92464 -9.81429 -9.75134 -9.60063 -9.46457 -8.83876 -8.49921 -8.34131 -6.87343 -5.67863 -2.96286 0.55655 0.91688 2.18875 2.64296 2.90202 3.48259 3.49772 3.54700 3.56173 3.76342 3.99971 4.06568 4.20336 4.42521 4.62018 4.64012 4.72671 4.78859 4.82273 4.88680 5.06666 5.12918 5.19683 5.29116 5.38010 5.41975 5.49499 5.64857 5.72574 5.74900 5.85297 5.97418 6.03492 6.06030 6.25546 6.27272 6.35902 6.46639 6.52197 6.70148 6.87754 7.20365 7.33590 7.52333 7.77528 7.87760 8.20412 8.50438 9.62228 10.20205 10.56861 11.54711 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023548 B = 0.002466 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.759177 B =11351.768905 C =11511.650758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.155 3.845 3 C -0.268 4.268 4 C 0.410 3.590 5 O -0.487 6.487 6 C -0.292 4.292 7 C 0.581 3.419 8 O -0.516 6.516 9 N -0.614 5.614 10 C 0.069 3.931 11 C 0.046 3.954 12 O -0.358 6.358 13 C 0.075 3.925 14 H 0.065 0.935 15 C 0.185 3.815 16 H 0.060 0.940 17 C -0.161 4.161 18 N -0.719 5.719 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.085 3.915 28 C 0.167 3.833 29 N -0.579 5.579 30 H 0.421 0.579 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.102 0.898 39 H 0.056 0.944 40 H 0.034 0.966 41 H 0.052 0.948 42 H 0.389 0.611 43 H 0.254 0.746 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.195 -7.630 -12.372 32.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.049 3.951 3 C -0.292 4.292 4 C 0.296 3.704 5 O -0.369 6.369 6 C -0.303 4.303 7 C 0.369 3.631 8 O -0.390 6.390 9 N -0.349 5.349 10 C -0.055 4.055 11 C -0.032 4.032 12 O -0.276 6.276 13 C 0.016 3.984 14 H 0.083 0.917 15 C 0.074 3.926 16 H 0.078 0.922 17 C -0.221 4.221 18 N -0.360 5.360 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.038 4.038 28 C 0.036 3.964 29 N -0.186 5.186 30 H 0.258 0.742 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.171 0.829 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.120 0.880 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.223 0.777 43 H 0.064 0.936 44 H 0.099 0.901 45 H 0.119 0.881 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -28.218 -6.740 -12.700 31.669 hybrid contribution 0.354 -0.173 0.373 0.542 sum -27.864 -6.913 -12.327 31.243 Atomic orbital electron populations 1.21104 0.87785 1.04998 1.04393 1.20284 0.94842 0.85464 0.94559 1.22231 0.96065 0.97467 1.13453 1.18172 0.88426 0.87661 0.76161 1.90836 1.70037 1.33385 1.42607 1.22420 0.94427 0.95404 1.18017 1.17527 0.86062 0.79169 0.80373 1.90820 1.66899 1.40976 1.40341 1.48110 1.08251 1.43734 1.34821 1.22610 0.96561 0.96378 0.89906 1.22879 0.83710 1.01607 0.95032 1.88087 1.18610 1.56450 1.64436 1.22985 0.93858 0.94368 0.87197 0.91737 1.20200 0.87411 0.94362 0.90616 0.92243 1.22408 1.01382 0.99398 0.98950 1.42351 1.06660 1.84221 1.02817 1.19255 0.84700 1.39820 0.93073 0.91162 1.24736 0.97788 1.02896 0.95604 1.69680 1.34043 1.56185 0.98074 0.86199 0.85297 0.77914 0.76844 1.21773 1.21871 1.20794 1.22487 0.78597 1.03392 0.99276 1.22190 0.82498 0.99958 0.91729 1.40703 1.05807 1.09000 1.63085 0.74241 0.89202 0.90385 0.88668 0.82941 0.90542 0.89524 0.92773 0.87974 0.92488 0.94686 0.92924 0.77694 0.93619 0.90088 0.88080 0.81032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.07 10.03 36.01 0.36 0.29 16 2 C 0.16 0.68 6.78 -82.13 -0.56 0.12 16 3 C -0.27 -2.36 9.57 -39.47 -0.38 -2.74 16 4 C 0.41 5.82 6.95 -34.68 -0.24 5.58 16 5 O -0.49 -9.62 17.23 0.32 0.01 -9.61 16 6 C -0.29 -3.51 5.07 -102.72 -0.52 -4.03 16 7 C 0.58 9.18 7.12 -12.58 -0.09 9.09 16 8 O -0.52 -10.62 16.14 0.73 0.01 -10.61 16 9 N -0.61 -8.43 3.02 -173.60 -0.52 -8.96 16 10 C 0.07 0.68 5.30 -3.53 -0.02 0.66 16 11 C 0.05 0.58 6.98 37.31 0.26 0.84 16 12 O -0.36 -6.16 9.25 -35.23 -0.33 -6.48 16 13 C 0.08 1.36 2.60 -26.57 -0.07 1.29 16 14 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 15 C 0.18 3.84 2.77 -67.93 -0.19 3.65 16 16 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 17 C -0.16 -3.01 9.06 37.16 0.34 -2.67 16 18 N -0.72 -18.78 5.10 -53.42 -0.27 -19.05 16 19 C -0.24 -6.78 9.93 -15.06 -0.15 -6.93 16 20 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -28.96 13.06 55.49 0.72 -28.24 16 23 Si 0.91 23.04 29.55 -169.99 -5.02 18.01 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.08 1.31 5.84 -3.54 -0.02 1.29 16 28 C 0.17 0.97 8.76 -16.54 -0.14 0.82 16 29 N -0.58 -1.58 5.16 -9.00 -0.05 -1.63 16 30 H 0.42 -0.62 8.70 -40.82 -0.35 -0.98 16 31 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 32 H 0.08 -0.10 8.12 -51.93 -0.42 -0.53 16 33 H 0.09 0.05 8.05 -51.93 -0.42 -0.37 16 34 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.64 5.29 -51.93 -0.27 0.37 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.10 7.56 -51.93 -0.39 0.71 16 40 H 0.03 0.53 6.42 -51.93 -0.33 0.20 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.39 10.94 7.59 -40.82 -0.31 10.63 16 43 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.08 1.12 6.28 -51.92 -0.33 0.80 16 45 H 0.10 1.71 7.06 -51.93 -0.37 1.34 16 46 H 0.17 0.49 7.16 -52.49 -0.38 0.12 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -42.12 375.45 -7.81 -49.93 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.50 Total: 4.24 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -1.51 Total: 6.74 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.12 Total: -57.88 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.31 Total: -26.70 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -42.12 -7.81 -49.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282926222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.405 kcal (2) G-P(sol) polarization free energy of solvation -42.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds