Wall clock time and date at job start Tue Mar 31 2020 19:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34862 * 119.09999 * 2 1 4 4 C 1.41673 * 119.34019 * 179.97438 * 3 2 1 5 5 O 1.22087 * 121.06865 * 180.02562 * 4 3 2 6 6 C 1.47101 * 117.85764 * 0.02562 * 4 3 2 7 7 C 1.47287 * 120.87739 * 180.02562 * 6 4 3 8 8 O 1.21628 * 120.00197 * 313.97068 * 7 6 4 9 9 N 1.34783 * 120.00212 * 133.97166 * 7 6 4 10 10 C 1.47154 * 120.97984 * 354.42687 * 9 7 6 11 11 C 1.53291 * 108.38422 * 230.51612 * 10 9 7 12 12 O 1.42964 * 109.22305 * 307.69940 * 11 10 9 13 13 C 1.42958 * 114.16918 * 62.57972 * 12 11 10 14 14 H 1.08997 * 109.51155 * 57.34295 * 13 12 11 15 15 C 1.53005 * 109.55501 * 177.47438 * 13 12 11 16 16 H 1.09002 * 109.46968 * 174.77508 * 15 13 12 17 17 C 1.52997 * 109.46936 * 54.77237 * 15 13 12 18 18 N 1.46498 * 109.47009 * 294.77138 * 15 13 12 19 19 C 1.36934 * 120.00308 * 205.00186 * 18 15 13 20 20 H 1.08004 * 119.99720 * 359.97438 * 19 18 15 21 21 C 1.38812 * 120.00410 * 180.02562 * 19 18 15 22 22 N 1.31614 * 119.99730 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99896 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47520 * 90.00166 * 23 21 19 25 25 H 1.48499 * 109.46954 * 209.99902 * 23 21 19 26 26 H 1.48498 * 109.47467 * 329.99659 * 23 21 19 27 27 C 1.47147 * 120.98254 * 174.40824 * 9 7 6 28 28 C 1.37990 * 118.24084 * 0.27041 * 6 4 3 29 29 N 1.34347 * 120.36661 * 359.44207 * 28 6 4 30 30 H 0.97001 * 118.80233 * 180.26577 * 29 28 6 31 31 H 1.09005 * 109.46990 * 89.99959 * 1 2 3 32 32 H 1.09000 * 109.47292 * 210.00260 * 1 2 3 33 33 H 1.09001 * 109.47345 * 330.00251 * 1 2 3 34 34 H 1.07996 * 120.33190 * 359.95264 * 3 2 1 35 35 H 1.08993 * 109.67918 * 110.79272 * 10 9 7 36 36 H 1.09000 * 109.71275 * 350.25157 * 10 9 7 37 37 H 1.09002 * 109.51952 * 67.61867 * 11 10 9 38 38 H 1.08998 * 109.51628 * 187.77758 * 11 10 9 39 39 H 1.09001 * 109.47047 * 299.99684 * 17 15 13 40 40 H 1.08995 * 109.47602 * 60.00365 * 17 15 13 41 41 H 1.09007 * 109.46643 * 180.02562 * 17 15 13 42 42 H 0.97000 * 119.99901 * 24.99904 * 18 15 13 43 43 H 0.97004 * 119.99988 * 180.02562 * 22 21 19 44 44 H 1.09008 * 109.68047 * 249.20853 * 27 9 7 45 45 H 1.08997 * 109.68661 * 9.75679 * 27 9 7 46 46 H 1.08000 * 119.81408 * 179.71189 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0006 5 8 4.2053 2.2327 0.0010 6 6 4.2724 -0.1133 0.0005 7 6 5.7435 -0.1847 0.0016 8 8 6.3871 0.5165 -0.7556 9 7 6.3768 -1.0272 0.8418 10 6 5.6292 -1.7956 1.8499 11 6 6.3071 -1.5963 3.2102 12 8 7.7003 -1.8937 3.0899 13 6 8.4064 -1.0357 2.1904 14 1 8.2889 0.0004 2.5078 15 6 9.8912 -1.4049 2.1899 16 1 10.4123 -0.8137 1.4369 17 6 10.0467 -2.8925 1.8679 18 7 10.4636 -1.1285 3.5098 19 6 11.8044 -0.8811 3.6366 20 1 12.4401 -0.8903 2.7635 21 6 12.3469 -0.6197 4.8873 22 7 11.5723 -0.6091 5.9513 23 14 14.1760 -0.2830 5.0602 24 1 14.4265 1.1741 4.9217 25 1 14.6395 -0.7403 6.3948 26 1 14.9164 -1.0153 4.0015 27 6 7.8359 -1.2062 0.7778 28 6 3.5076 -1.2618 -0.0058 29 7 2.1663 -1.1847 -0.0004 30 1 1.6509 -2.0064 -0.0011 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 1.6137 2.1083 -0.0008 35 1 5.6385 -2.8532 1.5865 36 1 4.6006 -1.4378 1.8965 37 1 6.1821 -0.5622 3.5315 38 1 5.8546 -2.2634 3.9438 39 1 9.5256 -3.4836 2.6210 40 1 9.6209 -3.0982 0.8859 41 1 11.1046 -3.1556 1.8680 42 1 9.8927 -1.1206 4.2940 43 1 11.9512 -0.4260 6.8253 44 1 8.0674 -2.2046 0.4064 45 1 8.2689 -0.4578 0.1142 46 1 3.9899 -2.2281 -0.0107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282926222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:25 Heat of formation + Delta-G solvation = -91.217682 kcal Electronic energy + Delta-G solvation = -29417.248681 eV Core-core repulsion = 25306.839451 eV Total energy + Delta-G solvation = -4110.409230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.21814 -41.08972 -39.54917 -38.75980 -37.13091 -35.82323 -34.47930 -34.12049 -32.62067 -31.78108 -29.98218 -29.40417 -28.08447 -26.42056 -25.19670 -24.94941 -23.71218 -23.09995 -21.51933 -21.03263 -19.40551 -19.15382 -18.74724 -17.69355 -17.62440 -17.28500 -16.95347 -16.67435 -16.46352 -16.11358 -16.00564 -15.62630 -15.58830 -15.17064 -15.02753 -14.56039 -14.43204 -14.27281 -14.05533 -13.90470 -13.70374 -13.65700 -13.47184 -13.16662 -13.03840 -12.97442 -12.83859 -12.44507 -12.38412 -12.18537 -11.86488 -11.65083 -11.59982 -11.28131 -11.07921 -10.94511 -10.49829 -10.41007 -9.62964 -9.21560 -9.01402 -7.92976 -5.21732 -0.13709 0.29923 1.45756 1.48646 1.52106 1.56695 1.69272 1.94218 2.56091 2.62870 2.75938 3.33528 3.40240 3.43617 3.58853 3.63276 3.88190 3.92126 3.95398 4.00985 4.11766 4.14208 4.29238 4.36904 4.39770 4.49818 4.59873 4.62161 4.74189 4.76719 4.79932 4.81674 4.83837 4.95265 5.11011 5.21692 5.23073 5.26703 5.36280 5.50780 5.64603 5.67193 6.11092 6.21323 6.27321 6.29600 7.01375 7.10038 7.34551 8.10124 8.35178 9.30754 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023548 B = 0.002466 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.759177 B =11351.768905 C =11511.650758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.199 3.801 3 C -0.306 4.306 4 C 0.383 3.617 5 O -0.584 6.584 6 C -0.350 4.350 7 C 0.576 3.424 8 O -0.584 6.584 9 N -0.612 5.612 10 C 0.072 3.928 11 C 0.034 3.966 12 O -0.375 6.375 13 C 0.091 3.909 14 H 0.023 0.977 15 C 0.175 3.825 16 H 0.053 0.947 17 C -0.145 4.145 18 N -0.733 5.733 19 C -0.239 4.239 20 H 0.076 0.924 21 C -0.079 4.079 22 N -0.970 5.970 23 Si 0.974 3.026 24 H -0.291 1.291 25 H -0.294 1.294 26 H -0.267 1.267 27 C 0.095 3.905 28 C 0.226 3.774 29 N -0.545 5.545 30 H 0.453 0.547 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.152 0.848 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.028 0.972 38 H 0.139 0.861 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.109 0.891 45 H 0.076 0.924 46 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.949 -12.164 -13.316 37.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.090 3.910 3 C -0.330 4.330 4 C 0.278 3.722 5 O -0.474 6.474 6 C -0.361 4.361 7 C 0.367 3.633 8 O -0.464 6.464 9 N -0.346 5.346 10 C -0.049 4.049 11 C -0.043 4.043 12 O -0.294 6.294 13 C 0.031 3.969 14 H 0.042 0.958 15 C 0.067 3.933 16 H 0.070 0.930 17 C -0.204 4.204 18 N -0.374 5.374 19 C -0.371 4.371 20 H 0.094 0.906 21 C -0.271 4.271 22 N -0.621 5.621 23 Si 0.803 3.197 24 H -0.218 1.218 25 H -0.220 1.220 26 H -0.192 1.192 27 C -0.029 4.029 28 C 0.091 3.909 29 N -0.152 5.152 30 H 0.296 0.704 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.169 0.831 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.046 0.954 38 H 0.156 0.844 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.127 0.873 45 H 0.094 0.906 46 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -32.076 -11.386 -13.669 36.679 hybrid contribution 1.238 1.079 0.656 1.769 sum -30.838 -10.307 -13.013 35.022 Atomic orbital electron populations 1.21316 0.83800 1.06955 1.06086 1.20745 0.96830 0.84254 0.89170 1.22053 0.93617 0.99826 1.17460 1.19026 0.90646 0.87578 0.74973 1.90778 1.71948 1.36096 1.48623 1.21950 0.92669 0.96720 1.24723 1.18165 0.87705 0.77971 0.79463 1.90765 1.68703 1.43573 1.43319 1.48195 1.07521 1.43730 1.35116 1.22921 0.96908 0.98327 0.86779 1.23240 0.81795 1.01206 0.98029 1.88036 1.21167 1.55795 1.64402 1.22517 0.92877 0.92305 0.89189 0.95846 1.20439 0.88935 0.95993 0.87978 0.92951 1.22179 1.00629 0.96698 1.00919 1.42530 1.05922 1.84596 1.04317 1.19658 0.85947 1.38244 0.93255 0.90565 1.25583 1.02270 1.03815 0.95435 1.69845 1.35851 1.58081 0.98322 0.85127 0.80176 0.77540 0.76858 1.21801 1.22031 1.19199 1.22235 0.80105 1.03962 0.96559 1.22621 0.83126 0.99448 0.85696 1.40984 1.05153 1.10169 1.58878 0.70356 0.87296 0.86774 0.88450 0.83067 0.85971 0.86616 0.95357 0.84367 0.93005 0.90703 0.94430 0.79341 0.94124 0.87300 0.90566 0.76246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.60 10.03 71.24 0.71 1.31 16 2 C 0.20 0.85 6.78 41.20 0.28 1.13 16 3 C -0.31 -5.33 9.57 22.34 0.21 -5.12 16 4 C 0.38 11.78 6.95 25.45 0.18 11.95 16 5 O -0.58 -26.39 17.23 -1.27 -0.02 -26.41 16 6 C -0.35 -8.26 5.07 -18.63 -0.09 -8.36 16 7 C 0.58 18.91 7.12 86.62 0.62 19.53 16 8 O -0.58 -26.34 16.14 0.21 0.00 -26.33 16 9 N -0.61 -16.38 3.02 -821.38 -2.48 -18.86 16 10 C 0.07 1.15 5.30 86.35 0.46 1.61 16 11 C 0.03 0.82 6.98 72.08 0.50 1.32 16 12 O -0.38 -12.78 9.25 -148.98 -1.38 -14.15 16 13 C 0.09 3.41 2.60 30.70 0.08 3.49 16 14 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 15 C 0.18 7.48 2.77 44.99 0.12 7.60 16 16 H 0.05 2.28 8.08 -2.39 -0.02 2.26 16 17 C -0.14 -5.23 9.06 71.98 0.65 -4.58 16 18 N -0.73 -39.75 5.10 -322.94 -1.65 -41.40 16 19 C -0.24 -14.01 9.93 84.03 0.83 -13.18 16 20 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 21 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 22 N -0.97 -62.24 13.06 21.65 0.28 -61.96 16 23 Si 0.97 48.36 29.55 68.60 2.03 50.38 16 24 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 25 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 27 C 0.09 2.94 5.84 86.36 0.50 3.45 16 28 C 0.23 1.46 8.76 84.25 0.74 2.20 16 29 N -0.54 0.56 5.16 -182.38 -0.94 -0.38 16 30 H 0.45 -5.36 8.70 -92.71 -0.81 -6.17 16 31 H 0.11 -0.71 8.14 -2.38 -0.02 -0.73 16 32 H 0.11 -1.23 8.12 -2.39 -0.02 -1.24 16 33 H 0.10 -0.34 8.05 -2.39 -0.02 -0.36 16 34 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 35 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.12 1.17 5.29 -2.39 -0.01 1.15 16 37 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.05 1.93 7.56 -2.39 -0.02 1.91 16 40 H 0.07 2.09 6.42 -2.39 -0.02 2.08 16 41 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.37 22.08 7.59 -92.71 -0.70 21.37 16 43 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.11 2.76 6.28 -2.38 -0.01 2.74 16 45 H 0.08 2.77 7.06 -2.39 -0.02 2.75 16 46 H 0.22 -0.52 7.16 -2.91 -0.02 -0.54 16 Total: -1.00 -108.74 375.45 1.63 -107.11 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -0.48 Total: 13.93 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 6.27 Total: 18.06 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -4.79 Total: -122.59 kcal Atomic # 8 Polarization: -65.50 SS G_CDS: -1.40 Total: -66.90 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.38 kcal Total: -108.74 1.63 -107.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282926222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.893 kcal (2) G-P(sol) polarization free energy of solvation -108.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds