Wall clock time and date at job start Tue Mar 31 2020 19:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40362 * 126.64371 * 2 1 4 4 C 1.35126 * 107.11593 * 180.26044 * 3 2 1 5 5 O 1.33931 * 108.76631 * 359.97438 * 4 3 2 6 6 C 1.34911 * 109.38652 * 0.02562 * 5 4 3 7 7 C 1.46662 * 125.99244 * 179.97438 * 6 5 4 8 8 O 1.21694 * 120.00438 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99520 * 0.02562 * 7 6 5 10 10 C 1.47422 * 125.64906 * 0.03170 * 9 7 6 11 11 C 1.54913 * 104.82772 * 204.09006 * 10 9 7 12 12 H 1.08997 * 111.00901 * 81.06398 * 11 10 9 13 13 N 1.46902 * 110.99949 * 204.91623 * 11 10 9 14 14 C 1.46904 * 110.99690 * 273.54257 * 13 11 10 15 15 C 1.50702 * 109.46987 * 180.02562 * 14 13 11 16 16 O 1.21296 * 119.99828 * 359.97438 * 15 14 13 17 17 N 1.34772 * 119.99918 * 180.02562 * 15 14 13 18 18 C 1.37100 * 119.99811 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00221 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99875 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00060 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 120.00087 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46753 * 60.00478 * 22 20 18 24 24 H 1.48498 * 109.47013 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46832 * 300.00464 * 22 20 18 26 26 C 1.55155 * 101.58163 * 322.98435 * 11 10 9 27 27 C 1.47020 * 125.64254 * 179.71510 * 9 7 6 28 28 H 1.08999 * 109.88644 * 298.39932 * 27 9 7 29 29 C 1.52999 * 109.88238 * 59.56619 * 27 9 7 30 30 H 1.09007 * 109.47508 * 269.68581 * 1 2 3 31 31 H 1.08993 * 109.47419 * 29.69381 * 1 2 3 32 32 H 1.09006 * 109.46890 * 149.69196 * 1 2 3 33 33 H 1.07996 * 126.44143 * 0.25732 * 3 2 1 34 34 H 1.08002 * 125.61763 * 180.02562 * 4 3 2 35 35 H 1.08999 * 110.36877 * 322.92427 * 10 9 7 36 36 H 1.08996 * 110.36974 * 85.24916 * 10 9 7 37 37 H 1.00897 * 110.99954 * 149.59643 * 13 11 10 38 38 H 1.08994 * 109.47220 * 300.00197 * 14 13 11 39 39 H 1.08998 * 109.46978 * 60.00789 * 14 13 11 40 40 H 0.97000 * 120.00566 * 359.97438 * 17 15 14 41 41 H 0.97004 * 120.00019 * 179.97438 * 21 20 18 42 42 H 1.08999 * 110.71660 * 153.86793 * 26 11 10 43 43 H 1.08993 * 110.72110 * 276.96690 * 26 11 10 44 44 H 1.09001 * 109.47206 * 58.54226 * 29 27 9 45 45 H 1.09003 * 109.47013 * 178.53887 * 29 27 9 46 46 H 1.08999 * 109.46856 * 298.54177 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 -0.0059 5 8 3.6005 -0.6647 -0.0089 6 6 2.3220 -1.0955 -0.0056 7 6 1.8842 -2.4953 -0.0078 8 8 0.6968 -2.7615 -0.0049 9 7 2.7972 -3.4868 -0.0132 10 6 4.2605 -3.3074 -0.0166 11 6 4.8187 -4.6143 -0.6332 12 1 4.7599 -4.5893 -1.7212 13 7 6.1969 -4.8598 -0.1879 14 6 7.1610 -4.1689 -1.0546 15 6 8.5606 -4.4439 -0.5683 16 8 8.7375 -5.1460 0.4049 17 7 9.6157 -3.9089 -1.2141 18 6 10.8890 -4.1587 -0.7713 19 1 11.0465 -4.7844 0.0947 20 6 11.9767 -3.6076 -1.4375 21 7 11.7850 -2.8466 -2.4915 22 14 13.7117 -3.9485 -0.8347 23 1 13.9707 -5.4102 -0.8729 24 1 14.6863 -3.2496 -1.7104 25 1 13.8572 -3.4562 0.5588 26 6 3.8482 -5.6741 -0.0480 27 6 2.4986 -4.9263 -0.0100 28 1 1.9520 -5.1896 0.8955 29 6 1.6709 -5.2888 -1.2448 30 1 -0.3634 -0.0056 1.0277 31 1 -0.3634 0.8926 -0.5090 32 1 -0.3633 -0.8873 -0.5186 33 1 2.0306 2.1594 0.0039 34 1 4.5046 1.2918 -0.0070 35 1 4.5362 -2.4503 -0.6308 36 1 4.6294 -3.1803 1.0011 37 1 6.3926 -5.8487 -0.1458 38 1 7.0544 -4.5306 -2.0772 39 1 6.9707 -3.0960 -1.0269 40 1 9.4743 -3.3472 -1.9921 41 1 12.5444 -2.4615 -2.9563 42 1 3.7906 -6.5458 -0.6999 43 1 4.1551 -5.9651 0.9565 44 1 2.2224 -5.0163 -2.1446 45 1 1.4755 -6.3611 -1.2492 46 1 0.7254 -4.7472 -1.2201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283948152.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:50 Heat of formation + Delta-G solvation = -49.512669 kcal Electronic energy + Delta-G solvation = -28866.670147 eV Core-core repulsion = 24758.069383 eV Total energy + Delta-G solvation = -4108.600765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.90803 -40.28505 -38.46261 -37.77145 -34.94172 -34.26007 -33.80699 -32.36114 -31.27035 -30.36833 -29.97473 -27.81339 -26.34857 -26.03589 -24.24742 -23.52877 -21.98236 -21.19676 -20.36012 -19.50623 -19.20539 -17.93213 -17.84834 -16.69300 -16.59104 -16.11565 -15.98352 -15.50070 -15.23002 -14.74074 -14.49785 -14.12068 -14.03973 -13.80221 -13.52698 -13.45621 -13.37904 -13.31566 -13.18819 -12.81173 -12.71966 -12.58666 -12.29905 -12.04884 -11.99646 -11.72132 -11.55948 -11.17036 -11.12313 -11.03395 -10.76936 -10.46534 -10.24034 -10.20898 -9.92001 -9.53001 -9.03986 -8.67483 -8.52736 -8.18947 -7.99603 -6.44569 -3.85559 0.87137 2.12761 2.41758 2.89411 2.98317 3.18035 3.24056 3.28321 3.86570 3.96080 4.16414 4.32593 4.40625 4.52111 4.55198 4.67779 4.79588 5.02224 5.11193 5.17587 5.20092 5.25088 5.28300 5.31692 5.40595 5.42252 5.50121 5.61821 5.65688 5.70738 5.75895 5.82284 5.83945 5.90767 5.92111 5.94564 6.04950 6.18088 6.22487 6.24842 6.69207 7.10497 7.24431 7.52295 7.53965 7.86087 8.02799 8.57744 9.14715 9.50786 10.01956 10.73007 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.002549 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.810131 B =10980.912928 C =12542.813149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.089 4.089 3 C -0.229 4.229 4 C -0.001 4.001 5 O -0.156 6.156 6 C -0.084 4.084 7 C 0.619 3.381 8 O -0.523 6.523 9 N -0.605 5.605 10 C 0.107 3.893 11 C 0.075 3.925 12 H 0.060 0.940 13 N -0.656 5.656 14 C 0.049 3.951 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.130 4.130 27 C 0.140 3.860 28 H 0.081 0.919 29 C -0.164 4.164 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.155 0.845 34 H 0.211 0.789 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.356 0.644 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.840 4.509 0.644 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.248 4.248 4 C -0.071 4.071 5 O -0.051 6.051 6 C -0.136 4.136 7 C 0.409 3.591 8 O -0.402 6.402 9 N -0.338 5.338 10 C -0.016 4.016 11 C -0.036 4.036 12 H 0.078 0.922 13 N -0.289 5.289 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.467 6.467 17 N -0.199 5.199 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.168 4.168 27 C 0.037 3.963 28 H 0.099 0.901 29 C -0.222 4.222 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.173 0.827 34 H 0.227 0.773 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.177 0.823 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.003 4.306 1.643 21.503 hybrid contribution 0.982 0.139 -1.076 1.463 sum -20.021 4.445 0.567 20.516 Atomic orbital electron populations 1.20408 0.88299 1.03452 1.02821 1.20620 0.97574 0.90998 0.99971 1.21729 0.92430 1.00093 1.10531 1.24487 1.00055 0.80912 1.01605 1.84228 1.28058 1.22446 1.70369 1.21737 0.81701 0.94472 1.15643 1.16121 0.84724 0.81293 0.76992 1.90816 1.15229 1.82205 1.51909 1.48387 1.07306 1.06109 1.72013 1.22517 0.77844 0.98390 1.02842 1.22612 0.89189 0.94527 0.97310 0.92243 1.59962 0.99107 1.17475 1.52389 1.21750 0.92257 1.00060 0.94272 1.19757 0.85558 0.85559 0.86538 1.90529 1.85650 1.42012 1.28535 1.41854 1.05307 1.44669 1.28086 1.19654 0.81320 1.29155 1.12840 0.87950 1.25264 1.00304 0.96420 0.95894 1.69603 1.32525 1.32873 1.19303 0.85919 0.81108 0.78642 0.78570 1.19895 1.20973 1.19856 1.22910 0.92884 0.97678 1.03350 1.21552 0.96307 0.79081 0.99372 0.90143 1.22178 1.01091 1.01818 0.97138 0.90890 0.91551 0.89589 0.82736 0.77258 0.89914 0.89586 0.82293 0.93655 0.89557 0.77457 0.91794 0.89629 0.89075 0.92448 0.91475 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 9.81 36.01 0.35 -0.54 16 2 C -0.09 -1.00 6.20 -104.43 -0.65 -1.64 16 3 C -0.23 -2.09 10.83 -39.89 -0.43 -2.52 16 4 C 0.00 0.00 12.08 29.63 0.36 0.35 16 5 O -0.16 -1.84 7.86 5.00 0.04 -1.80 16 6 C -0.08 -1.06 6.93 -36.79 -0.25 -1.31 16 7 C 0.62 8.34 7.60 -12.86 -0.10 8.24 16 8 O -0.52 -7.75 13.63 5.19 0.07 -7.67 16 9 N -0.61 -7.36 3.08 -164.54 -0.51 -7.87 16 10 C 0.11 1.31 5.82 -2.53 -0.01 1.29 16 11 C 0.07 0.88 3.32 -65.56 -0.22 0.66 16 12 H 0.06 0.68 7.92 -51.93 -0.41 0.27 16 13 N -0.66 -9.75 6.00 -105.72 -0.63 -10.39 16 14 C 0.05 0.82 6.04 -4.97 -0.03 0.79 16 15 C 0.44 10.05 7.82 -10.99 -0.09 9.96 16 16 O -0.58 -15.38 15.78 5.54 0.09 -15.29 16 17 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 18 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 19 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 22 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C -0.13 -1.26 5.95 -24.89 -0.15 -1.41 16 27 C 0.14 1.46 3.51 -66.95 -0.23 1.23 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 C -0.16 -1.59 9.05 37.16 0.34 -1.25 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.95 6.46 -51.93 -0.34 0.61 16 33 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.21 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.08 1.02 6.22 -51.93 -0.32 0.70 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.36 5.39 8.23 -39.29 -0.32 5.07 16 38 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 39 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.39 9.27 7.90 -40.82 -0.32 8.94 16 41 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.09 0.70 7.83 -51.93 -0.41 0.29 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.81 6.73 -51.93 -0.35 0.46 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -32.38 381.78 -7.53 -39.92 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -6.63 Total: 13.05 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.36 Total: 5.97 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.47 Total: -55.67 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.20 Total: -24.76 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.38 -7.53 -39.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283948152.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.595 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds