Wall clock time and date at job start Tue Mar 31 2020 19:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40362 * 126.64371 * 2 1 4 4 C 1.35126 * 107.11593 * 180.26044 * 3 2 1 5 5 O 1.33931 * 108.76631 * 359.97438 * 4 3 2 6 6 C 1.34911 * 109.38652 * 0.02562 * 5 4 3 7 7 C 1.46662 * 125.99244 * 179.97438 * 6 5 4 8 8 O 1.21694 * 120.00438 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99520 * 0.02562 * 7 6 5 10 10 C 1.47422 * 125.64906 * 0.03170 * 9 7 6 11 11 C 1.54913 * 104.82772 * 204.09006 * 10 9 7 12 12 H 1.08997 * 111.00901 * 81.06398 * 11 10 9 13 13 N 1.46902 * 110.99949 * 204.91623 * 11 10 9 14 14 C 1.46904 * 110.99690 * 273.54257 * 13 11 10 15 15 C 1.50702 * 109.46987 * 180.02562 * 14 13 11 16 16 O 1.21296 * 119.99828 * 359.97438 * 15 14 13 17 17 N 1.34772 * 119.99918 * 180.02562 * 15 14 13 18 18 C 1.37100 * 119.99811 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00221 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99875 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00060 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 120.00087 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46753 * 60.00478 * 22 20 18 24 24 H 1.48498 * 109.47013 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46832 * 300.00464 * 22 20 18 26 26 C 1.55155 * 101.58163 * 322.98435 * 11 10 9 27 27 C 1.47020 * 125.64254 * 179.71510 * 9 7 6 28 28 H 1.08999 * 109.88644 * 298.39932 * 27 9 7 29 29 C 1.52999 * 109.88238 * 59.56619 * 27 9 7 30 30 H 1.09007 * 109.47508 * 269.68581 * 1 2 3 31 31 H 1.08993 * 109.47419 * 29.69381 * 1 2 3 32 32 H 1.09006 * 109.46890 * 149.69196 * 1 2 3 33 33 H 1.07996 * 126.44143 * 0.25732 * 3 2 1 34 34 H 1.08002 * 125.61763 * 180.02562 * 4 3 2 35 35 H 1.08999 * 110.36877 * 322.92427 * 10 9 7 36 36 H 1.08996 * 110.36974 * 85.24916 * 10 9 7 37 37 H 1.00897 * 110.99954 * 149.59643 * 13 11 10 38 38 H 1.08994 * 109.47220 * 300.00197 * 14 13 11 39 39 H 1.08998 * 109.46978 * 60.00789 * 14 13 11 40 40 H 0.97000 * 120.00566 * 359.97438 * 17 15 14 41 41 H 0.97004 * 120.00019 * 179.97438 * 21 20 18 42 42 H 1.08999 * 110.71660 * 153.86793 * 26 11 10 43 43 H 1.08993 * 110.72110 * 276.96690 * 26 11 10 44 44 H 1.09001 * 109.47206 * 58.54226 * 29 27 9 45 45 H 1.09003 * 109.47013 * 178.53887 * 29 27 9 46 46 H 1.08999 * 109.46856 * 298.54177 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 -0.0059 5 8 3.6005 -0.6647 -0.0089 6 6 2.3220 -1.0955 -0.0056 7 6 1.8842 -2.4953 -0.0078 8 8 0.6968 -2.7615 -0.0049 9 7 2.7972 -3.4868 -0.0132 10 6 4.2605 -3.3074 -0.0166 11 6 4.8187 -4.6143 -0.6332 12 1 4.7599 -4.5893 -1.7212 13 7 6.1969 -4.8598 -0.1879 14 6 7.1610 -4.1689 -1.0546 15 6 8.5606 -4.4439 -0.5683 16 8 8.7375 -5.1460 0.4049 17 7 9.6157 -3.9089 -1.2141 18 6 10.8890 -4.1587 -0.7713 19 1 11.0465 -4.7844 0.0947 20 6 11.9767 -3.6076 -1.4375 21 7 11.7850 -2.8466 -2.4915 22 14 13.7117 -3.9485 -0.8347 23 1 13.9707 -5.4102 -0.8729 24 1 14.6863 -3.2496 -1.7104 25 1 13.8572 -3.4562 0.5588 26 6 3.8482 -5.6741 -0.0480 27 6 2.4986 -4.9263 -0.0100 28 1 1.9520 -5.1896 0.8955 29 6 1.6709 -5.2888 -1.2448 30 1 -0.3634 -0.0056 1.0277 31 1 -0.3634 0.8926 -0.5090 32 1 -0.3633 -0.8873 -0.5186 33 1 2.0306 2.1594 0.0039 34 1 4.5046 1.2918 -0.0070 35 1 4.5362 -2.4503 -0.6308 36 1 4.6294 -3.1803 1.0011 37 1 6.3926 -5.8487 -0.1458 38 1 7.0544 -4.5306 -2.0772 39 1 6.9707 -3.0960 -1.0269 40 1 9.4743 -3.3472 -1.9921 41 1 12.5444 -2.4615 -2.9563 42 1 3.7906 -6.5458 -0.6999 43 1 4.1551 -5.9651 0.9565 44 1 2.2224 -5.0163 -2.1446 45 1 1.4755 -6.3611 -1.2492 46 1 0.7254 -4.7472 -1.2201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283948152.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:49 Heat of formation + Delta-G solvation = -72.365331 kcal Electronic energy + Delta-G solvation = -28867.661113 eV Core-core repulsion = 24758.069383 eV Total energy + Delta-G solvation = -4109.591730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.70387 -41.23748 -40.12401 -38.93531 -36.29141 -35.64512 -35.04806 -33.29410 -33.20360 -31.12774 -31.08485 -28.66403 -27.89538 -26.90633 -25.84498 -24.51276 -22.77042 -22.14211 -21.31163 -20.98091 -20.31656 -19.87920 -18.77364 -17.82978 -17.57080 -17.25556 -17.01260 -16.73773 -16.49469 -16.32533 -15.87872 -15.51984 -15.12620 -14.92630 -14.79051 -14.57606 -14.27390 -14.11922 -14.00017 -13.85836 -13.77480 -13.53097 -13.51347 -13.38426 -13.12488 -12.96331 -12.82369 -12.76743 -12.41825 -12.13077 -12.07078 -11.98302 -11.68675 -11.48569 -11.16809 -10.67887 -10.33506 -10.00255 -9.97083 -9.52843 -9.41314 -8.45253 -5.93770 0.00936 1.39339 1.40925 1.43164 1.53535 1.56657 2.03350 2.05292 2.06900 2.30276 2.85916 3.22320 3.28048 3.48930 3.58360 3.72313 3.80270 3.92716 3.99225 4.17460 4.27022 4.32029 4.35133 4.48218 4.52698 4.56342 4.60813 4.61876 4.65816 4.75667 4.81230 4.83254 4.89803 4.98276 5.04910 5.11164 5.18228 5.23381 5.36991 5.42489 5.48184 5.87078 5.90712 6.08233 6.28200 6.36989 6.61383 6.89601 7.14092 7.57931 8.12975 8.71837 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.002549 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.810131 B =10980.912928 C =12542.813149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.094 4.094 3 C -0.232 4.232 4 C 0.005 3.995 5 O -0.171 6.171 6 C -0.119 4.119 7 C 0.613 3.387 8 O -0.546 6.546 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.080 3.920 12 H 0.072 0.928 13 N -0.666 5.666 14 C 0.064 3.936 15 C 0.439 3.561 16 O -0.622 6.622 17 N -0.573 5.573 18 C -0.333 4.333 19 H 0.079 0.921 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.272 1.272 26 C -0.119 4.119 27 C 0.135 3.865 28 H 0.079 0.921 29 C -0.156 4.156 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.183 0.817 34 H 0.246 0.754 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.355 0.645 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.056 0.944 45 H 0.089 0.911 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.878 5.248 0.005 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.251 4.251 4 C -0.065 4.065 5 O -0.066 6.066 6 C -0.170 4.170 7 C 0.403 3.597 8 O -0.427 6.427 9 N -0.338 5.338 10 C -0.011 4.011 11 C -0.031 4.031 12 H 0.090 0.910 13 N -0.300 5.300 14 C -0.068 4.068 15 C 0.227 3.773 16 O -0.508 6.508 17 N -0.210 5.210 18 C -0.463 4.463 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.157 4.157 27 C 0.033 3.967 28 H 0.097 0.903 29 C -0.214 4.214 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.200 0.800 34 H 0.262 0.738 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.176 0.824 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.127 0.873 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.108 0.892 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.058 5.048 0.986 21.677 hybrid contribution 0.937 -0.031 -0.841 1.259 sum -20.121 5.018 0.146 20.738 Atomic orbital electron populations 1.20416 0.87596 1.03670 1.03071 1.21024 0.98386 0.91496 0.98844 1.22073 0.92045 1.00815 1.10175 1.25303 1.01510 0.80107 0.99552 1.84203 1.27738 1.23877 1.70831 1.21722 0.82462 0.94478 1.18344 1.16343 0.84635 0.81982 0.76732 1.90790 1.15996 1.82747 1.53181 1.48440 1.07081 1.06684 1.71568 1.22402 0.77956 0.98737 1.01961 1.22605 0.87627 0.94911 0.97946 0.91021 1.59900 1.00201 1.17290 1.52603 1.21596 0.88533 1.01296 0.95362 1.20809 0.87430 0.83698 0.85364 1.90500 1.86750 1.43385 1.30190 1.41923 1.05180 1.45346 1.28573 1.19622 0.83183 1.30323 1.13141 0.90278 1.26011 1.03517 0.95827 0.95831 1.69663 1.33722 1.33002 1.19724 0.85021 0.76798 0.78555 0.78178 1.19678 1.19589 1.19761 1.22877 0.91482 0.97701 1.03633 1.21696 0.96892 0.78331 0.99809 0.90310 1.22111 0.99817 1.02956 0.96543 0.90529 0.89259 0.91397 0.80009 0.73833 0.90049 0.91101 0.82424 0.91194 0.88007 0.76966 0.91316 0.87342 0.89332 0.92480 0.89231 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.81 71.24 0.70 -1.01 16 2 C -0.09 -2.06 6.20 -19.74 -0.12 -2.18 16 3 C -0.23 -3.78 10.83 22.07 0.24 -3.54 16 4 C 0.00 0.08 12.08 67.10 0.81 0.89 16 5 O -0.17 -3.91 7.86 -5.02 -0.04 -3.95 16 6 C -0.12 -3.01 6.93 24.07 0.17 -2.84 16 7 C 0.61 16.82 7.60 86.44 0.66 17.48 16 8 O -0.55 -16.71 13.63 -4.33 -0.06 -16.77 16 9 N -0.61 -14.64 3.08 -792.71 -2.44 -17.08 16 10 C 0.11 2.69 5.82 86.86 0.51 3.20 16 11 C 0.08 1.74 3.32 46.31 0.15 1.89 16 12 H 0.07 1.45 7.92 -2.39 -0.02 1.43 16 13 N -0.67 -18.98 6.00 -488.40 -2.93 -21.91 16 14 C 0.06 2.05 6.04 85.56 0.52 2.57 16 15 C 0.44 20.04 7.82 87.66 0.69 20.72 16 16 O -0.62 -33.25 15.78 -3.08 -0.05 -33.30 16 17 N -0.57 -28.53 5.29 -306.98 -1.62 -30.15 16 18 C -0.33 -18.53 9.68 84.04 0.81 -17.72 16 19 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 21 N -0.92 -48.76 13.05 21.66 0.28 -48.47 16 22 Si 0.99 42.18 29.55 68.60 2.03 44.21 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 26 C -0.12 -2.11 5.95 31.79 0.19 -1.92 16 27 C 0.14 2.71 3.51 45.35 0.16 2.87 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 C -0.16 -2.84 9.05 71.98 0.65 -2.19 16 30 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.53 6.46 -2.38 -0.02 1.52 16 33 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 34 H 0.25 1.88 8.06 -2.91 -0.02 1.85 16 35 H 0.08 1.96 6.22 -2.39 -0.01 1.95 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.36 10.35 8.23 -89.70 -0.74 9.61 16 38 H 0.07 1.93 8.09 -2.39 -0.02 1.91 16 39 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 40 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 41 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 42 H 0.11 1.46 7.83 -2.39 -0.02 1.44 16 43 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.05 1.18 6.73 -2.39 -0.02 1.16 16 Total: -1.00 -71.23 381.78 1.31 -69.92 By element: Atomic # 1 Polarization: 39.91 SS G_CDS: -0.45 Total: 39.46 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 6.59 Total: 18.05 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -6.71 Total: -117.62 kcal Atomic # 8 Polarization: -53.87 SS G_CDS: -0.15 Total: -54.02 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -71.23 1.31 -69.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283948152.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.444 kcal (2) G-P(sol) polarization free energy of solvation -71.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds