Wall clock time and date at job start Tue Mar 31 2020 19:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35127 * 126.43792 * 2 1 4 4 O 1.33938 * 108.76612 * 179.76044 * 3 2 1 5 5 C 1.34916 * 109.37895 * 0.40122 * 4 3 2 6 6 C 1.46663 * 125.98347 * 179.87068 * 5 4 3 7 7 O 1.21696 * 119.99672 * 185.68786 * 6 5 4 8 8 N 1.34773 * 120.00278 * 5.68101 * 6 5 4 9 9 C 1.46501 * 119.99913 * 356.12218 * 8 6 5 10 10 C 1.46494 * 120.00195 * 176.11640 * 8 6 5 11 11 H 1.09001 * 110.62658 * 356.90209 * 10 8 6 12 12 C 1.55139 * 110.86159 * 233.69054 * 10 8 6 13 13 C 1.54901 * 101.65687 * 205.89704 * 12 10 8 14 14 N 1.47848 * 104.79589 * 37.06518 * 13 12 10 15 15 C 1.46898 * 110.99908 * 213.63529 * 14 13 12 16 16 C 1.50700 * 109.47450 * 290.84780 * 15 14 13 17 17 O 1.21290 * 119.99961 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99747 * 179.72549 * 16 15 14 19 19 C 1.37095 * 119.99759 * 179.97438 * 18 16 15 20 20 H 1.08006 * 120.00162 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00259 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99784 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00345 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46999 * 89.99956 * 23 21 19 25 25 H 1.48502 * 109.47372 * 210.00004 * 23 21 19 26 26 H 1.48500 * 109.47101 * 329.99863 * 23 21 19 27 27 C 1.47441 * 108.56715 * 335.90650 * 14 13 12 28 28 C 1.36545 * 108.02649 * 359.60016 * 5 4 3 29 29 H 1.09004 * 109.46695 * 270.00073 * 1 2 3 30 30 H 1.09001 * 109.47206 * 29.99646 * 1 2 3 31 31 H 1.08999 * 109.47217 * 150.00492 * 1 2 3 32 32 H 1.07994 * 125.62101 * 359.96185 * 3 2 1 33 33 H 1.08992 * 109.47343 * 275.73785 * 9 8 6 34 34 H 1.09004 * 109.46990 * 35.73455 * 9 8 6 35 35 H 1.09002 * 109.47097 * 155.73663 * 9 8 6 36 36 H 1.09004 * 110.98476 * 323.98534 * 12 10 8 37 37 H 1.08998 * 110.98842 * 87.76142 * 12 10 8 38 38 H 1.08998 * 110.37133 * 278.24256 * 13 12 10 39 39 H 1.08992 * 110.37739 * 155.89777 * 13 12 10 40 40 H 1.09003 * 109.46787 * 170.84190 * 15 14 13 41 41 H 1.08999 * 109.47033 * 50.85010 * 15 14 13 42 42 H 0.96992 * 120.00315 * 0.02562 * 18 16 15 43 43 H 0.97003 * 120.00319 * 179.97438 * 22 21 19 44 44 H 1.09006 * 109.88610 * 120.39739 * 27 14 13 45 45 H 1.08994 * 109.88873 * 241.58089 * 27 14 13 46 46 H 1.08003 * 126.64457 * 180.26752 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5858 0.6805 0.0053 5 6 3.6260 -0.6680 -0.0001 6 6 4.8379 -1.4940 0.0004 7 8 4.7504 -2.7028 -0.1093 8 7 6.0485 -0.9143 0.1222 9 6 6.1602 0.5457 0.1687 10 6 7.2527 -1.7441 0.2083 11 1 6.9904 -2.8021 0.2141 12 6 8.0866 -1.3789 1.4646 13 6 9.5108 -1.8054 1.0297 14 7 9.5863 -1.4605 -0.4061 15 6 10.4221 -2.4234 -1.1355 16 6 11.8608 -2.2566 -0.7191 17 8 12.1605 -1.4176 0.1040 18 7 12.8137 -3.0430 -1.2577 19 6 14.1226 -2.8908 -0.8792 20 1 14.3902 -2.1405 -0.1498 21 6 15.1050 -3.7018 -1.4340 22 7 14.7795 -4.6144 -2.3218 23 14 16.8885 -3.4940 -0.9189 24 1 17.1727 -4.3704 0.2457 25 1 17.7768 -3.8683 -2.0485 26 1 17.1338 -2.0781 -0.5444 27 6 8.2177 -1.4275 -0.9536 28 6 2.3408 -1.1291 -0.0001 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5137 32 1 1.9769 2.1145 -0.0006 33 1 6.1761 0.9414 -0.8468 34 1 5.3064 0.9585 0.7061 35 1 7.0811 0.8236 0.6814 36 1 8.0435 -0.3082 1.6640 37 1 7.7554 -1.9493 2.3323 38 1 9.6451 -2.8779 1.1698 39 1 10.2615 -1.2513 1.5930 40 1 10.3309 -2.2451 -2.2070 41 1 10.0928 -3.4369 -0.9066 42 1 12.5736 -3.7160 -1.9135 43 1 15.4654 -5.1803 -2.7094 44 1 8.0026 -0.4371 -1.3549 45 1 8.1136 -2.1780 -1.7370 46 1 2.0266 -2.1624 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318423423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:48 Heat of formation + Delta-G solvation = -32.743125 kcal Electronic energy + Delta-G solvation = -28398.612590 eV Core-core repulsion = 24290.739008 eV Total energy + Delta-G solvation = -4107.873583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.12102 -40.29583 -38.83043 -37.54813 -35.56752 -34.50970 -33.83777 -31.66555 -31.14551 -30.63035 -28.80145 -27.67908 -27.28593 -26.47631 -24.36073 -23.55224 -21.47911 -21.10721 -20.72117 -19.52477 -19.17669 -17.88539 -17.73914 -17.21808 -16.80831 -16.50961 -15.91354 -15.48914 -15.13206 -14.71991 -14.46500 -14.31822 -14.01236 -13.80904 -13.62247 -13.58942 -13.55966 -13.32855 -13.20956 -12.89049 -12.81380 -12.38267 -12.24406 -12.03965 -11.89536 -11.62218 -11.50016 -11.42643 -11.11709 -10.95376 -10.64996 -10.48027 -10.37261 -10.19278 -10.10318 -9.47099 -9.10913 -8.85136 -8.43522 -7.94734 -7.86030 -6.38830 -3.79607 0.71387 1.91080 2.25879 2.75351 2.85916 3.19599 3.28036 3.33954 3.94052 4.02199 4.11009 4.27980 4.35773 4.52268 4.56123 4.67301 4.84029 4.89329 4.97616 5.15762 5.16726 5.20141 5.25814 5.27866 5.30313 5.36001 5.40879 5.48629 5.52962 5.60066 5.70772 5.81907 5.83449 5.91355 5.93035 6.00112 6.07556 6.23982 6.31421 6.42360 6.52259 7.00478 7.21588 7.24293 7.57695 7.72912 8.09075 8.65025 9.21087 9.57789 10.09739 10.79006 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.042070 B = 0.001851 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.393135 B =15123.906815 C =15375.996385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.193 4.193 3 C -0.017 4.017 4 O -0.155 6.155 5 C -0.071 4.071 6 C 0.600 3.400 7 O -0.522 6.522 8 N -0.593 5.593 9 C 0.068 3.932 10 C 0.118 3.882 11 H 0.109 0.891 12 C -0.140 4.140 13 C 0.055 3.945 14 N -0.501 5.501 15 C 0.039 3.961 16 C 0.445 3.555 17 O -0.578 6.578 18 N -0.566 5.566 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.033 3.967 28 C -0.118 4.118 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.208 0.792 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.523 9.665 3.775 29.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.195 4.195 3 C -0.086 4.086 4 O -0.051 6.051 5 C -0.123 4.123 6 C 0.388 3.612 7 O -0.400 6.400 8 N -0.324 5.324 9 C -0.074 4.074 10 C 0.014 3.986 11 H 0.127 0.873 12 C -0.179 4.179 13 C -0.073 4.073 14 N -0.225 5.225 15 C -0.093 4.093 16 C 0.231 3.769 17 O -0.461 6.461 18 N -0.203 5.203 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.096 4.096 28 C -0.139 4.139 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.225 0.775 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.079 0.921 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -26.692 10.124 4.100 28.840 hybrid contribution 0.237 -1.159 -0.273 1.214 sum -26.454 8.965 3.828 28.193 Atomic orbital electron populations 1.20193 0.88642 1.02915 1.02358 1.20490 0.97720 0.92392 1.08852 1.24303 0.80556 1.00085 1.03683 1.84318 1.28561 1.21636 1.70554 1.21985 0.95943 0.80621 1.13733 1.16690 0.81171 0.86247 0.77060 1.90883 1.85618 1.12704 1.50794 1.47656 1.05587 1.07815 1.71360 1.22090 1.03920 0.78548 1.02831 1.22509 0.83540 0.96339 0.96181 0.87267 1.23153 0.95236 1.02644 0.96866 1.23001 0.95728 0.99632 0.88948 1.63296 1.08200 1.48443 1.02596 1.22145 0.93962 0.93984 0.99165 1.19706 0.86161 0.85055 0.86012 1.90500 1.82393 1.37164 1.36081 1.41859 1.06758 1.32753 1.38915 1.19691 0.82018 1.18156 1.22892 0.87937 1.25253 1.00462 0.95895 0.96383 1.69615 1.34817 1.21353 1.28603 0.85860 0.81679 0.78828 0.77926 1.20470 1.20962 1.19438 1.23195 0.87765 1.02336 0.96289 1.21847 0.90529 1.00609 1.00898 0.91245 0.91417 0.91250 0.77542 0.91959 0.89851 0.89574 0.89962 0.90458 0.93582 0.88305 0.89338 0.93155 0.77518 0.91918 0.90045 0.92125 0.82343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.39 36.01 0.37 -0.01 16 2 C -0.19 -1.40 6.14 -104.93 -0.64 -2.05 16 3 C -0.02 -0.11 12.00 29.63 0.36 0.25 16 4 O -0.15 -1.33 7.25 4.97 0.04 -1.30 16 5 C -0.07 -0.76 6.78 -36.79 -0.25 -1.01 16 6 C 0.60 7.64 7.64 -12.86 -0.10 7.54 16 7 O -0.52 -8.17 16.25 5.19 0.08 -8.09 16 8 N -0.59 -6.72 2.88 -173.40 -0.50 -7.22 16 9 C 0.07 0.60 8.49 59.85 0.51 1.11 16 10 C 0.12 1.47 3.34 -66.11 -0.22 1.25 16 11 H 0.11 1.50 7.01 -51.93 -0.36 1.13 16 12 C -0.14 -1.70 6.58 -24.60 -0.16 -1.86 16 13 C 0.05 0.85 5.75 -2.30 -0.01 0.84 16 14 N -0.50 -8.34 4.86 -232.70 -1.13 -9.47 16 15 C 0.04 0.71 5.05 -4.98 -0.03 0.68 16 16 C 0.45 10.58 7.58 -10.98 -0.08 10.49 16 17 O -0.58 -15.54 14.61 5.55 0.08 -15.46 16 18 N -0.57 -14.47 5.29 -10.96 -0.06 -14.53 16 19 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 20 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 23 Si 0.93 21.20 29.55 -169.99 -5.02 16.17 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.03 0.45 6.51 -2.84 -0.02 0.43 16 28 C -0.12 -1.13 10.58 -39.40 -0.42 -1.55 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.21 0.48 8.06 -52.49 -0.42 0.06 16 33 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 34 H 0.08 0.66 5.31 -51.93 -0.28 0.39 16 35 H 0.09 0.73 6.06 -51.93 -0.31 0.42 16 36 H 0.08 0.92 6.08 -51.93 -0.32 0.61 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.73 7.62 -51.93 -0.40 0.34 16 39 H 0.10 1.78 7.38 -51.93 -0.38 1.39 16 40 H 0.09 1.47 8.03 -51.93 -0.42 1.05 16 41 H 0.05 0.84 7.85 -51.93 -0.41 0.44 16 42 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 43 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.08 1.04 7.14 -51.93 -0.37 0.67 16 45 H 0.06 0.80 7.55 -51.93 -0.39 0.40 16 46 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -33.64 377.24 -7.46 -41.11 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.43 Total: 9.05 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -0.93 Total: 8.10 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.97 Total: -55.27 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: 0.20 Total: -24.85 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.64 -7.46 -41.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318423423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.364 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds