Wall clock time and date at job start Tue Mar 31 2020 19:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35127 * 126.43792 * 2 1 4 4 O 1.33938 * 108.76612 * 179.76044 * 3 2 1 5 5 C 1.34916 * 109.37895 * 0.40122 * 4 3 2 6 6 C 1.46663 * 125.98347 * 179.87068 * 5 4 3 7 7 O 1.21696 * 119.99672 * 185.68786 * 6 5 4 8 8 N 1.34773 * 120.00278 * 5.68101 * 6 5 4 9 9 C 1.46501 * 119.99913 * 356.12218 * 8 6 5 10 10 C 1.46494 * 120.00195 * 176.11640 * 8 6 5 11 11 H 1.09001 * 110.62658 * 356.90209 * 10 8 6 12 12 C 1.55139 * 110.86159 * 233.69054 * 10 8 6 13 13 C 1.54901 * 101.65687 * 205.89704 * 12 10 8 14 14 N 1.47848 * 104.79589 * 37.06518 * 13 12 10 15 15 C 1.46898 * 110.99908 * 213.63529 * 14 13 12 16 16 C 1.50700 * 109.47450 * 290.84780 * 15 14 13 17 17 O 1.21290 * 119.99961 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99747 * 179.72549 * 16 15 14 19 19 C 1.37095 * 119.99759 * 179.97438 * 18 16 15 20 20 H 1.08006 * 120.00162 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00259 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99784 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00345 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46999 * 89.99956 * 23 21 19 25 25 H 1.48502 * 109.47372 * 210.00004 * 23 21 19 26 26 H 1.48500 * 109.47101 * 329.99863 * 23 21 19 27 27 C 1.47441 * 108.56715 * 335.90650 * 14 13 12 28 28 C 1.36545 * 108.02649 * 359.60016 * 5 4 3 29 29 H 1.09004 * 109.46695 * 270.00073 * 1 2 3 30 30 H 1.09001 * 109.47206 * 29.99646 * 1 2 3 31 31 H 1.08999 * 109.47217 * 150.00492 * 1 2 3 32 32 H 1.07994 * 125.62101 * 359.96185 * 3 2 1 33 33 H 1.08992 * 109.47343 * 275.73785 * 9 8 6 34 34 H 1.09004 * 109.46990 * 35.73455 * 9 8 6 35 35 H 1.09002 * 109.47097 * 155.73663 * 9 8 6 36 36 H 1.09004 * 110.98476 * 323.98534 * 12 10 8 37 37 H 1.08998 * 110.98842 * 87.76142 * 12 10 8 38 38 H 1.08998 * 110.37133 * 278.24256 * 13 12 10 39 39 H 1.08992 * 110.37739 * 155.89777 * 13 12 10 40 40 H 1.09003 * 109.46787 * 170.84190 * 15 14 13 41 41 H 1.08999 * 109.47033 * 50.85010 * 15 14 13 42 42 H 0.96992 * 120.00315 * 0.02562 * 18 16 15 43 43 H 0.97003 * 120.00319 * 179.97438 * 22 21 19 44 44 H 1.09006 * 109.88610 * 120.39739 * 27 14 13 45 45 H 1.08994 * 109.88873 * 241.58089 * 27 14 13 46 46 H 1.08003 * 126.64457 * 180.26752 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5858 0.6805 0.0053 5 6 3.6260 -0.6680 -0.0001 6 6 4.8379 -1.4940 0.0004 7 8 4.7504 -2.7028 -0.1093 8 7 6.0485 -0.9143 0.1222 9 6 6.1602 0.5457 0.1687 10 6 7.2527 -1.7441 0.2083 11 1 6.9904 -2.8021 0.2141 12 6 8.0866 -1.3789 1.4646 13 6 9.5108 -1.8054 1.0297 14 7 9.5863 -1.4605 -0.4061 15 6 10.4221 -2.4234 -1.1355 16 6 11.8608 -2.2566 -0.7191 17 8 12.1605 -1.4176 0.1040 18 7 12.8137 -3.0430 -1.2577 19 6 14.1226 -2.8908 -0.8792 20 1 14.3902 -2.1405 -0.1498 21 6 15.1050 -3.7018 -1.4340 22 7 14.7795 -4.6144 -2.3218 23 14 16.8885 -3.4940 -0.9189 24 1 17.1727 -4.3704 0.2457 25 1 17.7768 -3.8683 -2.0485 26 1 17.1338 -2.0781 -0.5444 27 6 8.2177 -1.4275 -0.9536 28 6 2.3408 -1.1291 -0.0001 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5137 32 1 1.9769 2.1145 -0.0006 33 1 6.1761 0.9414 -0.8468 34 1 5.3064 0.9585 0.7061 35 1 7.0811 0.8236 0.6814 36 1 8.0435 -0.3082 1.6640 37 1 7.7554 -1.9493 2.3323 38 1 9.6451 -2.8779 1.1698 39 1 10.2615 -1.2513 1.5930 40 1 10.3309 -2.2451 -2.2070 41 1 10.0928 -3.4369 -0.9066 42 1 12.5736 -3.7160 -1.9135 43 1 15.4654 -5.1803 -2.7094 44 1 8.0026 -0.4371 -1.3549 45 1 8.1136 -2.1780 -1.7370 46 1 2.0266 -2.1624 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318423423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:47 Heat of formation + Delta-G solvation = -56.871372 kcal Electronic energy + Delta-G solvation = -28399.658870 eV Core-core repulsion = 24290.739008 eV Total energy + Delta-G solvation = -4108.919862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.74801 -41.33598 -40.30342 -39.07400 -36.61061 -35.86164 -35.09368 -33.32975 -32.64274 -31.45675 -29.84623 -28.57282 -28.07586 -27.70592 -26.09975 -24.47132 -22.41220 -22.13792 -21.60119 -21.00468 -20.35107 -19.87999 -18.51718 -18.19526 -17.64303 -17.52244 -17.27949 -16.84769 -16.37987 -16.06699 -16.01151 -15.60023 -15.56543 -14.78546 -14.55245 -14.48935 -14.34440 -14.20028 -14.08842 -13.95403 -13.78908 -13.61803 -13.42914 -13.30800 -12.99736 -12.88110 -12.69825 -12.58334 -12.52497 -12.41003 -12.27528 -12.11676 -11.75387 -11.48122 -11.46271 -10.74114 -10.31260 -10.00162 -9.96069 -9.53767 -9.23427 -8.45612 -5.94392 -0.01403 1.33162 1.38415 1.41838 1.48755 1.54929 1.97535 2.03327 2.06218 2.29186 2.78190 3.20692 3.32868 3.38470 3.59715 3.64955 3.81711 3.93557 4.05888 4.10046 4.22672 4.25195 4.28498 4.36224 4.40886 4.49436 4.58338 4.60917 4.65754 4.77616 4.82015 4.88865 4.90495 4.95003 5.02616 5.06546 5.10722 5.15982 5.34627 5.41628 5.52713 5.82524 5.85646 5.95755 6.06914 6.17009 6.61339 6.81621 7.13719 7.57155 8.12741 8.71888 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.042070 B = 0.001851 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.393135 B =15123.906815 C =15375.996385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.207 4.207 3 C 0.003 3.997 4 O -0.156 6.156 5 C -0.100 4.100 6 C 0.597 3.403 7 O -0.564 6.564 8 N -0.590 5.590 9 C 0.067 3.933 10 C 0.125 3.875 11 H 0.096 0.904 12 C -0.125 4.125 13 C 0.054 3.946 14 N -0.517 5.517 15 C 0.051 3.949 16 C 0.444 3.556 17 O -0.613 6.613 18 N -0.576 5.576 19 C -0.332 4.332 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.994 3.006 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.272 1.272 27 C 0.039 3.961 28 C -0.124 4.124 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.252 0.748 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.395 0.605 43 H 0.277 0.723 44 H 0.092 0.908 45 H 0.065 0.935 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.158 11.216 3.610 31.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.208 4.208 3 C -0.066 4.066 4 O -0.052 6.052 5 C -0.151 4.151 6 C 0.387 3.613 7 O -0.445 6.445 8 N -0.320 5.320 9 C -0.074 4.074 10 C 0.021 3.979 11 H 0.114 0.886 12 C -0.163 4.163 13 C -0.074 4.074 14 N -0.242 5.242 15 C -0.081 4.081 16 C 0.231 3.769 17 O -0.498 6.498 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.818 3.182 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.197 1.197 27 C -0.090 4.090 28 C -0.145 4.145 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.268 0.732 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.085 0.915 42 H 0.229 0.771 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.084 0.916 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -28.345 11.689 3.924 30.911 hybrid contribution 0.627 -1.557 -0.218 1.692 sum -27.719 10.132 3.707 29.744 Atomic orbital electron populations 1.20258 0.86790 1.03800 1.03088 1.20816 0.99062 0.91726 1.09228 1.25200 0.79329 1.01658 1.00381 1.84291 1.29879 1.20434 1.70607 1.21581 0.95224 0.81524 1.16780 1.16961 0.81963 0.86036 0.76335 1.90848 1.86317 1.14463 1.52888 1.47679 1.04814 1.08726 1.70776 1.22241 1.04653 0.76847 1.03631 1.22280 0.83869 0.95978 0.95801 0.88618 1.23048 0.92616 1.03566 0.97074 1.22895 0.97181 0.98770 0.88524 1.63230 1.09880 1.48085 1.02966 1.22011 0.90364 0.95406 1.00310 1.20673 0.88060 0.83551 0.84645 1.90473 1.83541 1.38400 1.37418 1.41933 1.06561 1.33420 1.39430 1.19668 0.83746 1.18887 1.23832 0.90201 1.26048 1.04172 0.95155 0.96010 1.69680 1.36230 1.21538 1.28850 0.84913 0.76731 0.78569 0.78025 1.19686 1.19609 1.19709 1.23185 0.86065 1.03138 0.96586 1.22066 0.90943 1.01320 1.00132 0.90547 0.89431 0.91533 0.73231 0.91132 0.88704 0.89142 0.88669 0.89259 0.94319 0.91098 0.87346 0.91490 0.77130 0.91367 0.88948 0.91614 0.82933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 71.24 0.74 0.19 16 2 C -0.21 -2.54 6.14 -20.06 -0.12 -2.66 16 3 C 0.00 0.03 12.00 67.10 0.81 0.84 16 4 O -0.16 -2.33 7.25 -5.12 -0.04 -2.37 16 5 C -0.10 -2.04 6.78 24.08 0.16 -1.88 16 6 C 0.60 15.12 7.64 86.44 0.66 15.78 16 7 O -0.56 -18.15 16.25 -4.34 -0.07 -18.22 16 8 N -0.59 -12.81 2.88 -820.74 -2.37 -15.18 16 9 C 0.07 1.05 8.49 127.77 1.08 2.14 16 10 C 0.13 3.03 3.34 46.17 0.15 3.18 16 11 H 0.10 2.63 7.01 -2.39 -0.02 2.61 16 12 C -0.12 -2.91 6.58 31.98 0.21 -2.70 16 13 C 0.05 1.71 5.75 86.77 0.50 2.21 16 14 N -0.52 -16.99 4.86 -890.12 -4.33 -21.32 16 15 C 0.05 1.82 5.05 85.56 0.43 2.25 16 16 C 0.44 21.48 7.58 87.66 0.66 22.15 16 17 O -0.61 -33.98 14.61 -3.06 -0.04 -34.02 16 18 N -0.58 -30.10 5.29 -306.99 -1.62 -31.73 16 19 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 20 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 21 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 22 N -0.92 -50.49 13.05 21.66 0.28 -50.21 16 23 Si 0.99 43.43 29.55 68.60 2.03 45.45 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 C 0.04 1.00 6.51 86.65 0.56 1.56 16 28 C -0.12 -2.30 10.58 22.39 0.24 -2.06 16 29 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.25 -0.13 8.06 -2.91 -0.02 -0.15 16 33 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16 34 H 0.09 1.29 5.31 -2.39 -0.01 1.28 16 35 H 0.09 1.34 6.06 -2.39 -0.01 1.33 16 36 H 0.09 1.99 6.08 -2.39 -0.01 1.98 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.04 1.26 7.62 -2.39 -0.02 1.24 16 39 H 0.07 2.64 7.38 -2.39 -0.02 2.62 16 40 H 0.11 3.48 8.03 -2.39 -0.02 3.46 16 41 H 0.07 2.21 7.85 -2.39 -0.02 2.19 16 42 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 43 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.09 2.19 7.14 -2.38 -0.02 2.17 16 45 H 0.07 1.64 7.55 -2.39 -0.02 1.62 16 46 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -74.77 377.24 1.50 -73.27 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.29 Total: 31.89 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 7.37 Total: 22.42 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -8.03 Total: -118.44 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -0.15 Total: -54.61 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -74.77 1.50 -73.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318423423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.404 kcal (2) G-P(sol) polarization free energy of solvation -74.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds