Wall clock time and date at job start Tue Mar 31 2020 19:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35129 * 126.44454 * 2 1 4 4 O 1.33924 * 108.77013 * 179.76988 * 3 2 1 5 5 C 1.34916 * 109.38461 * 0.38433 * 4 3 2 6 6 C 1.46656 * 125.98987 * 179.88628 * 5 4 3 7 7 O 1.21697 * 119.99966 * 186.84955 * 6 5 4 8 8 N 1.34776 * 119.99856 * 6.85393 * 6 5 4 9 9 C 1.46500 * 120.00178 * 5.08700 * 8 6 5 10 10 C 1.46503 * 119.99704 * 185.08629 * 8 6 5 11 11 H 1.08999 * 110.64991 * 358.30346 * 10 8 6 12 12 C 1.54597 * 110.72224 * 121.45210 * 10 8 6 13 13 C 1.53994 * 105.14228 * 140.49287 * 12 10 8 14 14 N 1.47906 * 107.05589 * 1.22363 * 13 12 10 15 15 C 1.46901 * 111.00263 * 214.15404 * 14 13 12 16 16 C 1.50694 * 109.47047 * 177.62880 * 15 14 13 17 17 O 1.21297 * 120.00310 * 7.05302 * 16 15 14 18 18 N 1.34779 * 120.00053 * 187.04475 * 16 15 14 19 19 C 1.37089 * 120.00230 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00200 * 0.02562 * 19 18 16 21 21 C 1.38957 * 119.99864 * 179.97438 * 19 18 16 22 22 N 1.31405 * 120.00307 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99611 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47450 * 60.00568 * 23 21 19 25 25 H 1.48498 * 109.46982 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47162 * 300.00199 * 23 21 19 27 27 C 1.48533 * 105.82107 * 334.67047 * 14 13 12 28 28 C 1.36548 * 108.02646 * 359.61999 * 5 4 3 29 29 H 1.08993 * 109.47289 * 269.99498 * 1 2 3 30 30 H 1.09001 * 109.47361 * 30.00062 * 1 2 3 31 31 H 1.09002 * 109.46808 * 149.99270 * 1 2 3 32 32 H 1.08000 * 125.61686 * 0.02570 * 3 2 1 33 33 H 1.09008 * 109.46836 * 275.74668 * 9 8 6 34 34 H 1.08991 * 109.47239 * 35.74280 * 9 8 6 35 35 H 1.08998 * 109.46796 * 155.74912 * 9 8 6 36 36 H 1.09000 * 110.31210 * 21.57649 * 12 10 8 37 37 H 1.09003 * 110.39412 * 259.44933 * 12 10 8 38 38 H 1.09001 * 109.91954 * 241.87974 * 13 12 10 39 39 H 1.08997 * 109.92153 * 120.57587 * 13 12 10 40 40 H 1.08993 * 109.47249 * 297.63551 * 15 14 13 41 41 H 1.09004 * 109.46512 * 57.63494 * 15 14 13 42 42 H 0.97004 * 119.99289 * 0.02562 * 18 16 15 43 43 H 0.96997 * 119.99939 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.66622 * 157.63798 * 27 14 13 45 45 H 1.09000 * 110.66732 * 280.77220 * 27 14 13 46 46 H 1.07993 * 126.65139 * 180.26677 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5857 0.6804 0.0051 5 6 3.6260 -0.6681 -0.0001 6 6 4.8379 -1.4941 0.0006 7 8 4.7517 -2.7010 -0.1301 8 7 6.0469 -0.9166 0.1462 9 6 6.1448 0.5202 0.4150 10 6 7.2632 -1.7258 0.0356 11 1 7.0139 -2.7730 -0.1353 12 6 8.1761 -1.1899 -1.0911 13 6 9.6089 -1.3114 -0.5399 14 7 9.5057 -1.9113 0.8081 15 6 10.5387 -1.3743 1.7039 16 6 10.3661 -1.9636 3.0800 17 8 9.5551 -2.8465 3.2643 18 7 11.1129 -1.5097 4.1060 19 6 10.9562 -2.0461 5.3579 20 1 10.2346 -2.8327 5.5219 21 6 11.7266 -1.5785 6.4155 22 7 12.6050 -0.6217 6.2160 23 14 11.5136 -2.3100 8.1211 24 1 11.8105 -3.7642 8.0767 25 1 12.4452 -1.6428 9.0657 26 1 10.1153 -2.1039 8.5770 27 6 8.1459 -1.5714 1.2996 28 6 2.3408 -1.1293 -0.0001 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5140 32 1 1.9771 2.1145 0.0004 33 1 6.0987 1.0697 -0.5254 34 1 5.3185 0.8270 1.0559 35 1 7.0902 0.7327 0.9140 36 1 7.9404 -0.1475 -1.3055 37 1 8.0643 -1.7952 -1.9907 38 1 10.0660 -0.3242 -0.4729 39 1 10.2029 -1.9554 -1.1884 40 1 11.5246 -1.6340 1.3184 41 1 10.4441 -0.2898 1.7585 42 1 11.7613 -0.8034 3.9586 43 1 13.1425 -0.2951 6.9544 44 1 7.8317 -2.2693 2.0757 45 1 8.1150 -0.5458 1.6675 46 1 2.0266 -2.1625 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318423429.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:52 Heat of formation + Delta-G solvation = -34.336531 kcal Electronic energy + Delta-G solvation = -28809.522519 eV Core-core repulsion = 24701.579841 eV Total energy + Delta-G solvation = -4107.942678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.01359 -40.19245 -38.81294 -37.51243 -35.47192 -34.42096 -33.89179 -31.68514 -31.15728 -30.59586 -28.67743 -27.56765 -27.22091 -26.50000 -24.36751 -23.53525 -21.38437 -21.04366 -20.65184 -19.34729 -19.17123 -17.88880 -17.69810 -17.06505 -16.67940 -16.38819 -16.04706 -15.28016 -15.10540 -14.77353 -14.48915 -14.24988 -13.91811 -13.85843 -13.72817 -13.52957 -13.40045 -13.25297 -13.13849 -12.93989 -12.75726 -12.34290 -12.23265 -12.00214 -11.92934 -11.54843 -11.50503 -11.40064 -11.15768 -10.87472 -10.62979 -10.43783 -10.32712 -10.21351 -10.00080 -9.48026 -8.98263 -8.72457 -8.43351 -8.04050 -7.93537 -6.41902 -3.82538 0.82325 2.00678 2.37499 2.82877 3.00197 3.20311 3.25879 3.30627 3.89911 4.05991 4.19225 4.28914 4.45230 4.60347 4.68073 4.71835 4.90915 4.92790 5.03747 5.11369 5.24594 5.24883 5.27560 5.31703 5.34928 5.37088 5.44533 5.55033 5.61836 5.65653 5.74708 5.76332 5.81722 5.89741 6.06114 6.06178 6.09504 6.26442 6.29149 6.50885 6.60940 7.11695 7.13717 7.21100 7.55147 7.86513 8.05855 8.61592 9.18045 9.53827 10.05897 10.75776 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.002472 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.862072 B =11324.130791 C =12472.694291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.194 4.194 3 C -0.017 4.017 4 O -0.157 6.157 5 C -0.069 4.069 6 C 0.601 3.399 7 O -0.516 6.516 8 N -0.596 5.596 9 C 0.074 3.926 10 C 0.135 3.865 11 H 0.118 0.882 12 C -0.139 4.139 13 C 0.035 3.965 14 N -0.490 5.490 15 C 0.039 3.961 16 C 0.441 3.559 17 O -0.576 6.576 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.033 3.967 28 C -0.119 4.119 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.208 0.792 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.111 0.889 45 H 0.043 0.957 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.999 8.800 -15.977 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.195 4.195 3 C -0.086 4.086 4 O -0.052 6.052 5 C -0.121 4.121 6 C 0.389 3.611 7 O -0.394 6.394 8 N -0.328 5.328 9 C -0.069 4.069 10 C 0.031 3.969 11 H 0.136 0.864 12 C -0.178 4.178 13 C -0.093 4.093 14 N -0.215 5.215 15 C -0.093 4.093 16 C 0.226 3.774 17 O -0.460 6.460 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.095 4.095 28 C -0.140 4.140 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.224 0.776 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.129 0.871 45 H 0.061 0.939 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.061 7.271 -15.785 24.354 hybrid contribution 0.251 1.251 0.881 1.550 sum -16.809 8.522 -14.904 24.027 Atomic orbital electron populations 1.20185 0.88657 1.02816 1.02399 1.20493 0.97712 0.92414 1.08868 1.24243 0.80416 1.00031 1.03937 1.84262 1.28776 1.21699 1.70488 1.22013 0.96021 0.80558 1.13538 1.16647 0.81102 0.86186 0.77136 1.90893 1.85412 1.12559 1.50514 1.47662 1.05476 1.09677 1.69951 1.21927 1.03726 0.79665 1.01545 1.22171 0.82626 0.96801 0.95265 0.86396 1.22756 0.94642 1.01689 0.98715 1.22902 0.96302 0.98297 0.91825 1.64483 1.01903 1.54199 1.00882 1.22087 0.96632 0.96959 0.93621 1.19715 0.85478 0.86773 0.85407 1.90513 1.38312 1.33071 1.84120 1.41856 1.35376 1.35134 1.07671 1.19650 1.20658 1.18603 0.83899 0.87962 1.25256 0.95925 0.96548 1.00194 1.69599 1.23723 1.27644 1.33415 0.85923 0.78156 0.79099 0.81087 1.19849 1.20986 1.19929 1.23633 0.88181 1.00663 0.97012 1.21856 0.90528 1.00627 1.00943 0.91205 0.91487 0.91272 0.77575 0.92153 0.90327 0.90132 0.91042 0.90445 0.93644 0.89993 0.88922 0.93470 0.77513 0.91835 0.87108 0.93854 0.82290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.39 36.01 0.37 -0.10 16 2 C -0.19 -1.64 6.14 -104.93 -0.64 -2.29 16 3 C -0.02 -0.13 12.00 29.63 0.36 0.23 16 4 O -0.16 -1.56 7.56 5.01 0.04 -1.52 16 5 C -0.07 -0.85 6.69 -36.80 -0.25 -1.09 16 6 C 0.60 8.72 7.63 -12.86 -0.10 8.63 16 7 O -0.52 -9.06 16.25 5.19 0.08 -8.97 16 8 N -0.60 -7.81 2.89 -173.35 -0.50 -8.31 16 9 C 0.07 0.75 8.07 59.85 0.48 1.24 16 10 C 0.13 1.92 3.46 -66.07 -0.23 1.69 16 11 H 0.12 1.92 7.00 -51.93 -0.36 1.56 16 12 C -0.14 -1.59 6.55 -25.37 -0.17 -1.76 16 13 C 0.04 0.44 6.70 -2.75 -0.02 0.42 16 14 N -0.49 -8.26 5.09 -231.89 -1.18 -9.44 16 15 C 0.04 0.69 5.28 -4.98 -0.03 0.66 16 16 C 0.44 10.43 7.41 -10.99 -0.08 10.35 16 17 O -0.58 -15.66 13.99 5.54 0.08 -15.58 16 18 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 19 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 23 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 C 0.03 0.56 5.14 -1.90 -0.01 0.55 16 28 C -0.12 -1.31 10.58 -39.39 -0.42 -1.72 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.21 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.06 0.52 8.09 -51.92 -0.42 0.10 16 34 H 0.08 0.78 6.01 -51.93 -0.31 0.47 16 35 H 0.08 0.82 6.13 -51.93 -0.32 0.50 16 36 H 0.07 0.71 7.12 -51.93 -0.37 0.34 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.51 7.70 -51.93 -0.40 0.11 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.05 0.75 7.99 -51.93 -0.42 0.34 16 42 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.11 2.32 6.52 -51.93 -0.34 1.98 16 45 H 0.04 0.70 6.00 -51.93 -0.31 0.38 16 46 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -33.70 377.09 -7.58 -41.29 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.46 Total: 9.99 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -0.96 Total: 8.83 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -1.01 Total: -55.87 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: 0.20 Total: -26.07 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.70 -7.58 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318423429.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.950 kcal (2) G-P(sol) polarization free energy of solvation -33.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds