Wall clock time and date at job start Tue Mar 31 2020 19:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30173 * 126.80268 * 2 1 4 4 O 1.20921 * 111.60320 * 180.02562 * 3 2 1 5 5 C 1.34035 * 111.56874 * 359.76195 * 4 3 2 6 6 C 1.50706 * 126.78036 * 180.28743 * 5 4 3 7 7 C 1.35450 * 106.44473 * 0.37624 * 5 4 3 8 8 C 1.50706 * 128.00746 * 179.90943 * 7 5 4 9 9 N 1.46501 * 109.47133 * 269.68251 * 8 7 5 10 10 C 1.46491 * 120.00221 * 269.99911 * 9 8 7 11 11 C 1.34781 * 119.99635 * 90.00443 * 9 8 7 12 12 O 1.21343 * 120.00099 * 359.17856 * 11 9 8 13 13 C 1.49447 * 119.99814 * 179.19041 * 11 9 8 14 14 O 1.21352 * 120.00135 * 4.28001 * 13 11 9 15 15 N 1.34774 * 120.00037 * 184.28533 * 13 11 9 16 16 C 1.46503 * 120.00175 * 185.04431 * 15 13 11 17 17 C 1.52998 * 109.47259 * 184.87182 * 16 15 13 18 18 C 1.50706 * 115.54947 * 306.51104 * 17 16 15 19 19 H 1.08001 * 119.99344 * 95.31415 * 18 17 16 20 20 C 1.37870 * 120.00211 * 275.03836 * 18 17 16 21 21 N 1.31522 * 119.99905 * 355.36149 * 20 18 17 22 22 Si 1.86800 * 120.00187 * 175.35634 * 20 18 17 23 23 H 1.48504 * 109.46663 * 60.00096 * 22 20 18 24 24 H 1.48502 * 109.47213 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47092 * 300.00387 * 22 20 18 26 26 C 1.52994 * 117.50013 * 92.18610 * 17 16 15 27 27 C 1.52999 * 117.49748 * 160.84451 * 17 16 15 28 28 H 1.09000 * 109.47328 * 269.97772 * 1 2 3 29 29 H 1.09007 * 109.47189 * 29.97427 * 1 2 3 30 30 H 1.09000 * 109.47606 * 149.97707 * 1 2 3 31 31 H 1.08994 * 109.47011 * 270.11276 * 6 5 4 32 32 H 1.08998 * 109.46710 * 30.11316 * 6 5 4 33 33 H 1.09004 * 109.47141 * 150.10961 * 6 5 4 34 34 H 1.09001 * 109.47092 * 149.68411 * 8 7 5 35 35 H 1.08999 * 109.46739 * 29.68396 * 8 7 5 36 36 H 1.09001 * 109.47365 * 262.53591 * 10 9 8 37 37 H 1.08998 * 109.47291 * 22.53694 * 10 9 8 38 38 H 1.09002 * 109.47385 * 142.53332 * 10 9 8 39 39 H 0.97001 * 120.00189 * 5.04741 * 15 13 11 40 40 H 1.09001 * 109.47010 * 64.87134 * 16 15 13 41 41 H 1.08996 * 109.47118 * 304.87651 * 16 15 13 42 42 H 0.97000 * 119.99911 * 184.99392 * 21 20 18 43 43 H 1.08999 * 117.50096 * 215.00634 * 26 17 16 44 44 H 1.09001 * 117.49855 * 0.02562 * 26 17 16 45 45 H 1.08997 * 117.50185 * 359.97345 * 27 17 16 46 46 H 1.09005 * 117.50014 * 144.97242 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6068 0.0043 6 6 4.9021 -1.3697 0.0113 7 6 2.3539 -1.1320 -0.0005 8 6 1.9589 -2.5864 0.0000 9 7 1.8297 -3.0578 -1.3811 10 6 0.5408 -2.9611 -2.0705 11 6 2.8968 -3.5806 -2.0172 12 8 3.9680 -3.6472 -1.4512 13 6 2.7606 -4.0782 -3.4198 14 8 1.7109 -3.9410 -4.0131 15 7 3.8035 -4.6793 -4.0259 16 6 3.7074 -5.0676 -5.4353 17 6 4.9689 -5.8325 -5.8407 18 6 6.2730 -5.1335 -5.5546 19 1 6.8125 -5.3486 -4.6441 20 6 6.7802 -4.2238 -6.4579 21 7 6.1745 -4.0331 -7.6097 22 14 8.3277 -3.2619 -6.0459 23 1 9.4512 -4.2059 -5.8181 24 1 8.6625 -2.3560 -7.1740 25 1 8.0991 -2.4589 -4.8179 26 6 4.9419 -7.3570 -5.7144 27 6 4.8944 -6.7023 -7.0972 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8903 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 5.2201 -1.5551 -1.0146 32 1 5.6635 -0.7852 0.5277 33 1 4.7626 -2.3204 0.5260 34 1 1.0053 -2.7037 0.5147 35 1 2.7230 -3.1701 0.5133 36 1 0.0239 -3.9188 -2.0106 37 1 -0.0672 -2.1899 -1.5977 38 1 0.7067 -2.7025 -3.1164 39 1 4.6179 -4.8549 -3.5289 40 1 3.6100 -4.1743 -6.0524 41 1 2.8346 -5.7046 -5.5779 42 1 6.5699 -3.4478 -8.2745 43 1 5.8673 -7.8545 -5.4243 44 1 4.0252 -7.8150 -5.3429 45 1 3.9465 -6.7299 -7.6347 46 1 5.7885 -6.7687 -7.7172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321850904.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:57 Heat of formation + Delta-G solvation = 24.584988 kcal Electronic energy + Delta-G solvation = -29681.465795 eV Core-core repulsion = 25576.078146 eV Total energy + Delta-G solvation = -4105.387649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.00863 -40.49302 -38.34680 -36.80916 -36.40011 -34.64110 -33.62430 -33.25065 -32.01658 -29.38443 -28.70866 -27.39507 -27.08168 -26.19667 -25.35636 -23.08681 -21.55931 -21.13498 -20.23168 -19.80585 -19.16111 -17.78740 -17.46472 -17.15454 -16.70447 -16.19056 -15.88325 -15.26878 -14.85580 -14.69060 -14.54487 -14.25911 -13.89899 -13.80719 -13.66077 -13.32380 -13.22971 -13.14615 -12.83861 -12.72879 -12.68701 -12.32960 -12.18948 -12.11265 -11.95446 -11.65879 -11.04291 -11.03180 -10.98295 -10.95841 -10.56726 -10.26919 -10.10734 -9.62406 -9.42156 -9.12075 -8.97809 -8.83621 -8.58184 -8.43124 -8.14992 -6.12451 -4.22934 1.32975 1.73374 1.94427 2.73648 3.02542 3.26095 3.31839 3.34333 3.54545 3.84735 4.00518 4.30641 4.32741 4.55641 4.80120 4.85137 4.92219 5.15523 5.19154 5.20907 5.28129 5.28672 5.31588 5.46595 5.49339 5.57789 5.63524 5.73357 5.88524 5.93398 6.02033 6.08505 6.23734 6.29184 6.38486 6.43793 6.65275 6.74153 6.97627 7.04591 7.08393 7.26910 7.46533 7.73358 7.77281 8.13389 8.17452 8.27204 8.52401 8.79330 9.45505 10.94422 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.003480 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.485984 B = 8043.799672 C = 9294.223662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.031 3.969 3 N -0.371 5.371 4 O 0.092 5.908 5 C 0.005 3.995 6 C -0.073 4.073 7 C -0.235 4.235 8 C 0.195 3.805 9 N -0.589 5.589 10 C 0.065 3.935 11 C 0.509 3.491 12 O -0.516 6.516 13 C 0.495 3.505 14 O -0.537 6.537 15 N -0.661 5.661 16 C 0.160 3.840 17 C 0.022 3.978 18 C -0.504 4.504 19 H 0.062 0.938 20 C 0.076 3.924 21 N -0.874 5.874 22 Si 0.889 3.111 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.210 4.210 27 C -0.141 4.141 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.110 0.890 39 H 0.415 0.585 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.263 0.737 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.100 2.890 15.221 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 N -0.079 5.079 4 O 0.029 5.971 5 C -0.059 4.059 6 C -0.130 4.130 7 C -0.240 4.240 8 C 0.072 3.928 9 N -0.323 5.323 10 C -0.077 4.077 11 C 0.292 3.708 12 O -0.391 6.391 13 C 0.275 3.725 14 O -0.417 6.417 15 N -0.310 5.310 16 C 0.037 3.963 17 C 0.021 3.979 18 C -0.541 4.541 19 H 0.080 0.920 20 C -0.129 4.129 21 N -0.510 5.510 22 Si 0.717 3.283 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.247 4.247 27 C -0.179 4.179 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.128 0.872 39 H 0.253 0.747 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.465 4.424 14.905 18.742 hybrid contribution 1.072 -0.154 0.215 1.104 sum -9.393 4.270 15.120 18.305 Atomic orbital electron populations 1.20271 0.86127 1.03950 1.03284 1.23405 0.98755 0.88506 1.02217 1.73832 0.89319 1.23967 1.20736 1.84812 1.21621 1.22760 1.67874 1.24551 0.98711 0.83426 0.99219 1.20463 0.89132 0.98171 1.05257 1.21244 0.91985 0.97765 1.13010 1.19601 1.03052 0.87373 0.82783 1.47740 1.11139 1.59884 1.13532 1.22475 0.83054 1.01544 1.00580 1.20525 0.84002 0.78708 0.87594 1.90706 1.26215 1.55072 1.67079 1.19885 0.85038 0.80707 0.86919 1.90609 1.27408 1.57034 1.66686 1.45888 1.16281 1.55296 1.13577 1.21137 0.97295 0.99381 0.78495 1.19007 0.93495 0.86822 0.98541 1.20314 1.04577 1.22966 1.06256 0.92019 1.24976 0.96834 0.96063 0.94981 1.69975 1.38301 1.36988 1.05719 0.86699 0.83309 0.80142 0.78168 1.20158 1.21277 1.19944 1.23066 1.00174 0.98590 1.02912 1.22466 1.00634 1.04578 0.90208 0.90138 0.90423 0.89912 0.88489 0.90372 0.88332 0.88834 0.88255 0.92151 0.91975 0.87235 0.74741 0.91038 0.93414 0.92762 0.90263 0.91658 0.91767 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.39 36.00 0.37 -0.27 16 2 C 0.03 0.37 7.33 -82.10 -0.60 -0.23 16 3 N -0.37 -5.28 12.07 33.42 0.40 -4.87 16 4 O 0.09 1.29 11.20 17.19 0.19 1.48 16 5 C 0.01 0.07 7.49 -35.30 -0.26 -0.20 16 6 C -0.07 -0.81 8.99 36.01 0.32 -0.48 16 7 C -0.23 -2.78 5.90 -104.42 -0.62 -3.40 16 8 C 0.19 1.98 5.69 -5.19 -0.03 1.95 16 9 N -0.59 -7.36 2.86 -183.47 -0.52 -7.89 16 10 C 0.07 0.72 9.48 59.84 0.57 1.29 16 11 C 0.51 7.92 7.74 -11.58 -0.09 7.83 16 12 O -0.52 -8.37 13.57 5.50 0.07 -8.30 16 13 C 0.49 8.90 7.79 -11.59 -0.09 8.81 16 14 O -0.54 -10.17 13.12 5.49 0.07 -10.09 16 15 N -0.66 -12.83 5.39 -60.73 -0.33 -13.15 16 16 C 0.16 3.42 5.61 -4.04 -0.02 3.40 16 17 C 0.02 0.50 1.64 -155.66 -0.26 0.25 16 18 C -0.50 -12.64 8.02 -34.44 -0.28 -12.92 16 19 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 20 C 0.08 1.97 5.43 -17.82 -0.10 1.87 16 21 N -0.87 -23.61 12.65 55.43 0.70 -22.91 16 22 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.21 -4.27 9.92 -26.70 -0.26 -4.53 16 27 C -0.14 -3.11 9.18 -26.70 -0.24 -3.36 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.56 5.57 -51.93 -0.29 0.27 16 31 H 0.10 1.26 7.55 -51.93 -0.39 0.87 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.10 1.02 6.96 -51.93 -0.36 0.66 16 34 H 0.09 0.68 8.07 -51.93 -0.42 0.27 16 35 H 0.10 1.00 6.73 -51.93 -0.35 0.65 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.52 5.45 -51.93 -0.28 0.24 16 38 H 0.11 1.52 5.48 -51.93 -0.28 1.23 16 39 H 0.42 8.06 7.40 -40.82 -0.30 7.76 16 40 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 42 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 43 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 46 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 382.97 15.07 5.77 5.77 Total: -1.00 -29.09 382.97 -6.69 -35.78 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.45 Total: 8.83 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.59 Total: 0.02 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.25 Total: -48.83 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.34 Total: -16.91 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.09 -6.69 -35.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321850904.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.366 kcal (2) G-P(sol) polarization free energy of solvation -29.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds