Wall clock time and date at job start Tue Mar 31 2020 19:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30173 * 126.80268 * 2 1 4 4 O 1.20921 * 111.60320 * 180.02562 * 3 2 1 5 5 C 1.34035 * 111.56874 * 359.76195 * 4 3 2 6 6 C 1.50706 * 126.78036 * 180.28743 * 5 4 3 7 7 C 1.35450 * 106.44473 * 0.37624 * 5 4 3 8 8 C 1.50706 * 128.00746 * 179.90943 * 7 5 4 9 9 N 1.46501 * 109.47133 * 269.68251 * 8 7 5 10 10 C 1.46491 * 120.00221 * 269.99911 * 9 8 7 11 11 C 1.34781 * 119.99635 * 90.00443 * 9 8 7 12 12 O 1.21343 * 120.00099 * 359.17856 * 11 9 8 13 13 C 1.49447 * 119.99814 * 179.19041 * 11 9 8 14 14 O 1.21352 * 120.00135 * 4.28001 * 13 11 9 15 15 N 1.34774 * 120.00037 * 184.28533 * 13 11 9 16 16 C 1.46503 * 120.00175 * 185.04431 * 15 13 11 17 17 C 1.52998 * 109.47259 * 184.87182 * 16 15 13 18 18 C 1.50706 * 115.54947 * 306.51104 * 17 16 15 19 19 H 1.08001 * 119.99344 * 95.31415 * 18 17 16 20 20 C 1.37870 * 120.00211 * 275.03836 * 18 17 16 21 21 N 1.31522 * 119.99905 * 355.36149 * 20 18 17 22 22 Si 1.86800 * 120.00187 * 175.35634 * 20 18 17 23 23 H 1.48504 * 109.46663 * 60.00096 * 22 20 18 24 24 H 1.48502 * 109.47213 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47092 * 300.00387 * 22 20 18 26 26 C 1.52994 * 117.50013 * 92.18610 * 17 16 15 27 27 C 1.52999 * 117.49748 * 160.84451 * 17 16 15 28 28 H 1.09000 * 109.47328 * 269.97772 * 1 2 3 29 29 H 1.09007 * 109.47189 * 29.97427 * 1 2 3 30 30 H 1.09000 * 109.47606 * 149.97707 * 1 2 3 31 31 H 1.08994 * 109.47011 * 270.11276 * 6 5 4 32 32 H 1.08998 * 109.46710 * 30.11316 * 6 5 4 33 33 H 1.09004 * 109.47141 * 150.10961 * 6 5 4 34 34 H 1.09001 * 109.47092 * 149.68411 * 8 7 5 35 35 H 1.08999 * 109.46739 * 29.68396 * 8 7 5 36 36 H 1.09001 * 109.47365 * 262.53591 * 10 9 8 37 37 H 1.08998 * 109.47291 * 22.53694 * 10 9 8 38 38 H 1.09002 * 109.47385 * 142.53332 * 10 9 8 39 39 H 0.97001 * 120.00189 * 5.04741 * 15 13 11 40 40 H 1.09001 * 109.47010 * 64.87134 * 16 15 13 41 41 H 1.08996 * 109.47118 * 304.87651 * 16 15 13 42 42 H 0.97000 * 119.99911 * 184.99392 * 21 20 18 43 43 H 1.08999 * 117.50096 * 215.00634 * 26 17 16 44 44 H 1.09001 * 117.49855 * 0.02562 * 26 17 16 45 45 H 1.08997 * 117.50185 * 359.97345 * 27 17 16 46 46 H 1.09005 * 117.50014 * 144.97242 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6068 0.0043 6 6 4.9021 -1.3697 0.0113 7 6 2.3539 -1.1320 -0.0005 8 6 1.9589 -2.5864 0.0000 9 7 1.8297 -3.0578 -1.3811 10 6 0.5408 -2.9611 -2.0705 11 6 2.8968 -3.5806 -2.0172 12 8 3.9680 -3.6472 -1.4512 13 6 2.7606 -4.0782 -3.4198 14 8 1.7109 -3.9410 -4.0131 15 7 3.8035 -4.6793 -4.0259 16 6 3.7074 -5.0676 -5.4353 17 6 4.9689 -5.8325 -5.8407 18 6 6.2730 -5.1335 -5.5546 19 1 6.8125 -5.3486 -4.6441 20 6 6.7802 -4.2238 -6.4579 21 7 6.1745 -4.0331 -7.6097 22 14 8.3277 -3.2619 -6.0459 23 1 9.4512 -4.2059 -5.8181 24 1 8.6625 -2.3560 -7.1740 25 1 8.0991 -2.4589 -4.8179 26 6 4.9419 -7.3570 -5.7144 27 6 4.8944 -6.7023 -7.0972 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8903 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 5.2201 -1.5551 -1.0146 32 1 5.6635 -0.7852 0.5277 33 1 4.7626 -2.3204 0.5260 34 1 1.0053 -2.7037 0.5147 35 1 2.7230 -3.1701 0.5133 36 1 0.0239 -3.9188 -2.0106 37 1 -0.0672 -2.1899 -1.5977 38 1 0.7067 -2.7025 -3.1164 39 1 4.6179 -4.8549 -3.5289 40 1 3.6100 -4.1743 -6.0524 41 1 2.8346 -5.7046 -5.5779 42 1 6.5699 -3.4478 -8.2745 43 1 5.8673 -7.8545 -5.4243 44 1 4.0252 -7.8150 -5.3429 45 1 3.9465 -6.7299 -7.6347 46 1 5.7885 -6.7687 -7.7172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321850904.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:56 Heat of formation + Delta-G solvation = 7.156062 kcal Electronic energy + Delta-G solvation = -29682.221569 eV Core-core repulsion = 25576.078146 eV Total energy + Delta-G solvation = -4106.143424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.95449 -41.76248 -39.72048 -38.46201 -37.48029 -35.67023 -34.82560 -34.44115 -33.96773 -30.21290 -29.57759 -28.80710 -27.98710 -27.63553 -27.03952 -24.31014 -22.92453 -22.52576 -21.44000 -21.13627 -20.61603 -18.82705 -18.74288 -18.22851 -17.95654 -17.73846 -17.13815 -16.65165 -16.59738 -16.06099 -15.83183 -15.41491 -15.11193 -15.01511 -14.62593 -14.45801 -14.38143 -14.20425 -13.95900 -13.81145 -13.67884 -13.59131 -13.49668 -13.17421 -13.06392 -12.93915 -12.92755 -12.81653 -12.39409 -12.18465 -11.99480 -11.91012 -11.39591 -11.02467 -10.95793 -10.52318 -10.44881 -10.22071 -10.07733 -9.92826 -9.78328 -8.10486 -6.24119 0.33616 0.45353 1.00437 1.42227 1.45257 1.50053 1.58635 2.08779 2.22887 2.41596 2.63706 3.17291 3.18982 3.37529 3.47883 3.59348 3.75951 3.97794 4.14620 4.22502 4.37966 4.46178 4.49684 4.52105 4.63229 4.65964 4.67221 4.68083 4.72064 4.75513 4.78440 4.89110 4.95340 5.03917 5.06230 5.16387 5.23979 5.29259 5.35755 5.47252 5.56575 5.70300 5.77325 5.93444 6.35703 6.40161 6.78371 6.83723 7.06566 7.22666 7.46128 8.95742 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.003480 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.485984 B = 8043.799672 C = 9294.223662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.034 3.966 3 N -0.403 5.403 4 O 0.070 5.930 5 C -0.007 4.007 6 C -0.068 4.068 7 C -0.238 4.238 8 C 0.194 3.806 9 N -0.578 5.578 10 C 0.064 3.936 11 C 0.508 3.492 12 O -0.526 6.526 13 C 0.491 3.509 14 O -0.548 6.548 15 N -0.668 5.668 16 C 0.176 3.824 17 C -0.001 4.001 18 C -0.506 4.506 19 H 0.060 0.940 20 C 0.032 3.968 21 N -0.903 5.903 22 Si 0.941 3.059 23 H -0.269 1.269 24 H -0.291 1.291 25 H -0.274 1.274 26 C -0.181 4.181 27 C -0.149 4.149 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.134 0.866 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.415 0.585 40 H 0.036 0.964 41 H 0.057 0.943 42 H 0.259 0.741 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.535 2.284 17.370 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 N -0.114 5.114 4 O 0.011 5.989 5 C -0.072 4.072 6 C -0.125 4.125 7 C -0.243 4.243 8 C 0.072 3.928 9 N -0.311 5.311 10 C -0.077 4.077 11 C 0.290 3.710 12 O -0.403 6.403 13 C 0.273 3.727 14 O -0.428 6.428 15 N -0.318 5.318 16 C 0.052 3.948 17 C -0.002 4.002 18 C -0.544 4.544 19 H 0.078 0.922 20 C -0.170 4.170 21 N -0.540 5.540 22 Si 0.767 3.233 23 H -0.194 1.194 24 H -0.217 1.217 25 H -0.199 1.199 26 C -0.218 4.218 27 C -0.187 4.187 28 H 0.122 0.878 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.152 0.848 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.252 0.748 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.093 0.907 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.899 3.817 17.083 21.166 hybrid contribution 1.433 0.043 -0.417 1.493 sum -10.466 3.860 16.667 20.055 Atomic orbital electron populations 1.20471 0.83398 1.04785 1.05030 1.24057 1.00427 0.87874 1.00182 1.73830 0.89647 1.25295 1.22635 1.84777 1.21913 1.23476 1.68703 1.24941 0.99785 0.83264 0.99160 1.20445 0.89200 0.98737 1.04133 1.21500 0.91612 0.98557 1.12664 1.19916 1.05403 0.86105 0.81330 1.47805 1.10629 1.58311 1.14318 1.22513 0.82676 1.03345 0.99196 1.20064 0.84827 0.79523 0.86557 1.90708 1.26732 1.55934 1.66887 1.20407 0.84355 0.79886 0.88101 1.90619 1.27693 1.56978 1.67482 1.45809 1.16883 1.56279 1.12785 1.20755 0.97008 0.97735 0.79275 1.19066 0.93128 0.88386 0.99584 1.20597 1.05370 1.22643 1.05799 0.92158 1.25594 0.99297 0.97041 0.95035 1.70082 1.39536 1.37933 1.06485 0.85876 0.80812 0.78986 0.77577 1.19430 1.21651 1.19933 1.23056 1.01474 0.96603 1.00686 1.22381 1.00111 1.05533 0.90649 0.87840 0.90487 0.88102 0.90688 0.88582 0.87484 0.84840 0.87860 0.90919 0.88663 0.90115 0.74810 0.94554 0.92437 0.93184 0.90010 0.89103 0.90746 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.39 71.23 0.74 -0.29 16 2 C 0.03 0.75 7.33 43.58 0.32 1.07 16 3 N -0.40 -11.18 12.07 -49.57 -0.60 -11.78 16 4 O 0.07 1.95 11.20 71.68 0.80 2.76 16 5 C -0.01 -0.18 7.49 25.04 0.19 0.01 16 6 C -0.07 -1.46 8.99 71.24 0.64 -0.82 16 7 C -0.24 -5.14 5.90 -19.73 -0.12 -5.25 16 8 C 0.19 3.31 5.69 85.63 0.49 3.79 16 9 N -0.58 -13.00 2.86 -852.74 -2.44 -15.44 16 10 C 0.06 1.24 9.48 127.77 1.21 2.45 16 11 C 0.51 15.19 7.74 87.27 0.68 15.86 16 12 O -0.53 -16.55 13.57 -3.22 -0.04 -16.60 16 13 C 0.49 17.44 7.79 87.27 0.68 18.12 16 14 O -0.55 -20.45 13.12 -3.25 -0.04 -20.50 16 15 N -0.67 -25.85 5.39 -464.41 -2.50 -28.36 16 16 C 0.18 7.57 5.61 86.38 0.48 8.06 16 17 C 0.00 -0.04 1.64 -52.93 -0.09 -0.13 16 18 C -0.51 -25.53 8.02 25.60 0.21 -25.32 16 19 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 20 C 0.03 1.66 5.43 84.65 0.46 2.12 16 21 N -0.90 -49.88 12.65 21.45 0.27 -49.61 16 22 Si 0.94 42.21 29.54 68.60 2.03 44.24 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 C -0.18 -7.08 9.92 30.61 0.30 -6.77 16 27 C -0.15 -6.56 9.18 30.62 0.28 -6.28 16 28 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.10 0.90 5.57 -2.39 -0.01 0.89 16 31 H 0.07 1.97 7.55 -2.39 -0.02 1.95 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.11 2.08 6.96 -2.38 -0.02 2.06 16 34 H 0.13 1.27 8.07 -2.39 -0.02 1.25 16 35 H 0.10 1.76 6.73 -2.39 -0.02 1.74 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 1.20 5.45 -2.39 -0.01 1.19 16 38 H 0.08 2.12 5.48 -2.39 -0.01 2.11 16 39 H 0.41 16.07 7.40 -92.71 -0.69 15.38 16 40 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 2.32 8.04 -2.39 -0.02 2.31 16 42 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 43 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 44 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 45 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 46 H 0.06 3.12 8.14 -2.38 -0.02 3.10 16 Total: -1.00 -63.88 382.97 4.28 -59.60 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.34 Total: 29.06 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 6.47 Total: 6.62 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -5.27 Total: -105.18 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: 0.72 Total: -34.34 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -63.88 4.28 -59.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321850904.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.756 kcal (2) G-P(sol) polarization free energy of solvation -63.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds