Wall clock time and date at job start Tue Mar 31 2020 19:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41383 * 126.80122 * 2 1 4 4 C 1.35449 * 103.98766 * 179.97438 * 3 2 1 5 5 C 1.50694 * 126.77793 * 179.97438 * 4 3 2 6 6 C 1.50703 * 115.54956 * 330.05094 * 5 4 3 7 7 O 1.21286 * 120.00029 * 124.35099 * 6 5 4 8 8 N 1.34781 * 119.99743 * 304.34107 * 6 5 4 9 9 C 1.46497 * 119.99765 * 185.01478 * 8 6 5 10 10 C 1.53004 * 109.46922 * 184.11513 * 9 8 6 11 11 H 1.09001 * 109.71125 * 59.79815 * 10 9 8 12 12 C 1.53712 * 109.74497 * 180.56942 * 10 9 8 13 13 O 1.42958 * 109.14532 * 172.16082 * 12 10 9 14 14 C 1.42956 * 114.17154 * 297.28670 * 13 12 10 15 15 C 1.53304 * 109.21850 * 62.58022 * 14 13 12 16 16 N 1.47142 * 108.38650 * 307.69952 * 15 14 13 17 17 C 1.36937 * 120.98566 * 230.51265 * 16 15 14 18 18 H 1.08001 * 120.00358 * 148.57326 * 17 16 15 19 19 C 1.38816 * 119.99650 * 328.57317 * 17 16 15 20 20 N 1.31618 * 120.00030 * 350.00697 * 19 17 16 21 21 Si 1.86798 * 119.99815 * 170.00963 * 19 17 16 22 22 H 1.48496 * 109.47089 * 185.06503 * 21 19 17 23 23 H 1.48507 * 109.47032 * 305.06175 * 21 19 17 24 24 H 1.48500 * 109.47436 * 65.06152 * 21 19 17 25 25 C 1.53004 * 117.49758 * 115.71396 * 5 4 3 26 26 C 1.53000 * 117.50040 * 184.37538 * 5 4 3 27 27 O 1.34036 * 106.44376 * 0.24147 * 4 3 2 28 28 N 1.20922 * 111.56890 * 359.56174 * 27 4 3 29 29 H 1.09005 * 109.46561 * 90.00198 * 1 2 3 30 30 H 1.08992 * 109.47196 * 210.00133 * 1 2 3 31 31 H 1.08995 * 109.47231 * 330.00424 * 1 2 3 32 32 H 1.08003 * 128.00843 * 359.96023 * 3 2 1 33 33 H 0.96997 * 119.99847 * 5.02274 * 8 6 5 34 34 H 1.08996 * 109.47611 * 64.11218 * 9 8 6 35 35 H 1.09001 * 109.47040 * 304.10986 * 9 8 6 36 36 H 1.09004 * 109.66032 * 52.19839 * 12 10 9 37 37 H 1.08997 * 109.44665 * 291.99789 * 12 10 9 38 38 H 1.08998 * 109.51589 * 302.66218 * 14 13 12 39 39 H 1.08996 * 109.55864 * 182.52929 * 14 13 12 40 40 H 1.09008 * 109.68205 * 187.97604 * 15 14 13 41 41 H 1.09006 * 109.71088 * 67.44195 * 15 14 13 42 42 H 0.97001 * 120.00065 * 180.02562 * 20 19 17 43 43 H 1.09006 * 117.50069 * 215.00109 * 25 5 4 44 44 H 1.08997 * 117.50077 * 0.03076 * 25 5 4 45 45 H 1.09000 * 117.49826 * 359.97438 * 26 5 4 46 46 H 1.09001 * 117.50045 * 144.99822 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6069 0.0006 5 6 4.9021 1.3696 0.0003 6 6 4.8665 2.7142 -0.6794 7 8 5.2061 3.7089 -0.0742 8 7 4.4574 2.8113 -1.9599 9 6 4.5264 4.0989 -2.6553 10 6 3.9113 3.9593 -4.0492 11 1 2.8703 3.6478 -3.9622 12 6 3.9933 5.3037 -4.7900 13 8 3.5857 5.1166 -6.1475 14 6 4.4222 4.2286 -6.8927 15 6 4.3661 2.8330 -6.2607 16 7 4.6641 2.9612 -4.8254 17 6 5.6099 2.1711 -4.2284 18 1 6.1821 2.5501 -3.3946 19 6 5.8331 0.8829 -4.6951 20 7 5.0113 0.3497 -5.5740 21 14 7.3000 -0.0937 -4.0755 22 1 7.3844 -1.3806 -4.8117 23 1 8.5438 0.6865 -4.2981 24 1 7.1379 -0.3634 -2.6242 25 6 5.8092 1.2202 1.2234 26 6 6.1964 0.5602 -0.1024 27 8 3.4538 -0.7252 -0.0045 28 7 2.2869 -1.0422 0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 2.0710 2.1744 -0.0006 33 1 4.1171 2.0287 -2.4210 34 1 5.5679 4.4070 -2.7469 35 1 3.9744 4.8482 -2.0879 36 1 5.0182 5.6740 -4.7654 37 1 3.3332 6.0246 -4.3078 38 1 5.4486 4.5949 -6.8757 39 1 4.0715 4.1758 -7.9234 40 1 5.1057 2.1862 -6.7328 41 1 3.3704 2.4094 -6.3926 42 1 5.1671 -0.5506 -5.8998 43 1 6.3803 2.0944 1.5363 44 1 5.4662 0.5698 2.0279 45 1 6.1078 -0.5242 -0.1694 46 1 7.0221 1.0000 -0.6617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326655674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:47 Heat of formation + Delta-G solvation = 39.591794 kcal Electronic energy + Delta-G solvation = -30828.603905 eV Core-core repulsion = 26723.867000 eV Total energy + Delta-G solvation = -4104.736905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.81859 -39.86321 -38.52045 -36.62734 -35.33868 -34.70190 -33.64703 -31.70947 -31.27818 -30.45649 -28.66122 -27.32048 -26.19839 -24.00135 -23.49833 -23.15607 -22.40892 -21.71721 -20.76512 -19.75804 -19.10995 -17.86760 -17.43028 -16.77921 -16.27164 -15.93666 -15.82132 -15.12043 -15.02614 -14.65084 -14.32602 -14.25025 -13.82656 -13.62355 -13.51676 -13.36708 -13.21514 -13.04886 -12.91094 -12.68163 -12.31632 -12.00432 -11.61345 -11.58412 -11.29091 -11.14645 -10.99617 -10.88022 -10.79235 -10.65009 -10.47536 -10.29322 -10.10113 -9.91504 -9.72640 -9.61471 -9.11765 -8.97995 -8.71230 -8.39606 -6.77336 -5.95266 -3.46443 1.49580 2.29895 2.59808 3.17340 3.24962 3.32493 3.34147 3.53974 3.93040 4.24398 4.28768 4.30811 4.49042 4.77461 4.84036 4.94406 5.10916 5.16989 5.22921 5.28526 5.44495 5.51868 5.53956 5.60623 5.65908 5.68077 5.77703 5.78306 5.83299 5.95885 5.97282 6.02274 6.10541 6.12704 6.15948 6.16013 6.29215 6.47901 6.69064 6.95470 7.02936 7.45489 7.62982 7.82635 8.05912 8.24251 8.35231 8.61926 9.00189 9.60792 10.20454 11.10787 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.004968 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.482326 B = 5634.284074 C = 6190.887162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.019 3.981 3 C -0.221 4.221 4 C 0.020 3.980 5 C -0.091 4.091 6 C 0.554 3.446 7 O -0.550 6.550 8 N -0.683 5.683 9 C 0.135 3.865 10 C 0.124 3.876 11 H 0.041 0.959 12 C 0.057 3.943 13 O -0.392 6.392 14 C 0.035 3.965 15 C 0.144 3.856 16 N -0.591 5.591 17 C -0.262 4.262 18 H 0.072 0.928 19 C 0.013 3.987 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.290 1.290 23 H -0.283 1.283 24 H -0.271 1.271 25 C -0.129 4.129 26 C -0.137 4.137 27 O 0.102 5.898 28 N -0.365 5.365 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.169 0.831 33 H 0.419 0.581 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.028 0.972 42 H 0.257 0.743 43 H 0.117 0.883 44 H 0.105 0.895 45 H 0.111 0.889 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 2.517 8.580 9.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.139 4.139 3 C -0.242 4.242 4 C -0.043 4.043 5 C -0.096 4.096 6 C 0.338 3.662 7 O -0.429 6.429 8 N -0.334 5.334 9 C 0.011 3.989 10 C 0.017 3.983 11 H 0.059 0.941 12 C -0.022 4.022 13 O -0.311 6.311 14 C -0.043 4.043 15 C 0.019 3.981 16 N -0.316 5.316 17 C -0.391 4.391 18 H 0.090 0.910 19 C -0.188 4.188 20 N -0.540 5.540 21 Si 0.720 3.280 22 H -0.216 1.216 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.166 4.166 26 C -0.174 4.174 27 O 0.037 5.963 28 N -0.070 5.070 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.187 0.813 33 H 0.259 0.741 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.135 0.865 44 H 0.123 0.877 45 H 0.130 0.870 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.789 1.799 8.799 9.747 hybrid contribution 0.694 -0.372 -0.132 0.799 sum -3.095 1.426 8.667 9.313 Atomic orbital electron populations 1.20153 0.85964 1.03475 1.03553 1.23523 0.98972 0.88706 1.02741 1.22282 0.90806 1.01116 1.10041 1.22908 0.95623 0.83562 1.02229 1.19468 0.87777 0.95284 1.07071 1.18778 0.78022 0.87366 0.82047 1.90665 1.50226 1.36653 1.65394 1.46049 1.62431 1.13789 1.11119 1.21220 1.01329 0.84747 0.91606 1.21519 0.95420 0.91315 0.90015 0.94128 1.22931 0.99323 0.96666 0.83321 1.87799 1.54368 1.66348 1.22592 1.23352 0.93359 0.92901 0.94673 1.21417 1.00555 0.91942 0.84211 1.44072 1.42787 1.41243 1.03546 1.19136 1.11729 0.92549 1.15659 0.91047 1.25179 0.98080 0.96288 0.99225 1.69955 1.36043 1.15167 1.32830 0.86548 0.82678 0.79459 0.79270 1.21604 1.20891 1.19641 1.23173 0.99292 1.03422 0.90755 1.23231 0.94685 0.99961 0.99556 1.84795 1.21699 1.22199 1.67656 1.73830 0.89154 1.23906 1.20137 0.89983 0.90711 0.90095 0.81335 0.74131 0.91410 0.91898 0.93443 0.89955 0.94104 0.90258 0.88913 0.95340 0.93314 0.86475 0.87688 0.87021 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.47 36.01 0.38 -0.40 16 2 C 0.02 0.28 7.33 -82.10 -0.60 -0.32 16 3 C -0.22 -3.26 10.59 -39.38 -0.42 -3.68 16 4 C 0.02 0.32 6.64 -35.31 -0.23 0.09 16 5 C -0.09 -1.43 2.45 -156.81 -0.38 -1.81 16 6 C 0.55 9.79 6.77 -10.98 -0.07 9.72 16 7 O -0.55 -10.73 16.47 5.55 0.09 -10.63 16 8 N -0.68 -12.45 3.88 -60.29 -0.23 -12.68 16 9 C 0.13 2.38 4.47 -4.04 -0.02 2.36 16 10 C 0.12 2.35 3.24 -67.20 -0.22 2.14 16 11 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 12 C 0.06 0.97 6.31 37.53 0.24 1.21 16 13 O -0.39 -7.48 10.74 -35.23 -0.38 -7.85 16 14 C 0.04 0.66 6.99 37.31 0.26 0.92 16 15 C 0.14 3.21 5.37 -3.53 -0.02 3.19 16 16 N -0.59 -13.18 3.02 -164.05 -0.50 -13.68 16 17 C -0.26 -6.22 6.95 -15.06 -0.10 -6.33 16 18 H 0.07 1.70 5.84 -52.49 -0.31 1.40 16 19 C 0.01 0.31 5.07 -17.43 -0.09 0.23 16 20 N -0.90 -23.83 11.11 55.49 0.62 -23.22 16 21 Si 0.89 19.87 29.57 -169.99 -5.03 14.84 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -5.64 6.84 56.52 0.39 -5.25 16 25 C -0.13 -1.66 9.75 -26.69 -0.26 -1.92 16 26 C -0.14 -2.00 9.65 -26.69 -0.26 -2.26 16 27 O 0.10 1.71 10.96 17.19 0.19 1.90 16 28 N -0.37 -6.10 12.07 33.42 0.40 -5.70 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.17 2.25 8.06 -52.48 -0.42 1.83 16 33 H 0.42 8.43 7.02 -40.82 -0.29 8.14 16 34 H 0.07 1.27 7.56 -51.93 -0.39 0.88 16 35 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.09 2.28 6.32 -51.92 -0.33 1.95 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 43 H 0.12 1.48 7.83 -51.93 -0.41 1.08 16 44 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.11 1.56 8.00 -51.93 -0.42 1.15 16 46 H 0.11 1.71 8.11 -51.93 -0.42 1.29 16 LS Contribution 377.52 15.07 5.69 5.69 Total: -1.00 -28.60 377.52 -7.73 -36.33 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -6.78 Total: 11.87 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.80 Total: 3.13 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.29 Total: -55.27 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.10 Total: -16.59 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.60 -7.73 -36.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326655674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.919 kcal (2) G-P(sol) polarization free energy of solvation -28.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds