Wall clock time and date at job start Tue Mar 31 2020 19:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41383 * 126.80122 * 2 1 4 4 C 1.35449 * 103.98766 * 179.97438 * 3 2 1 5 5 C 1.50694 * 126.77793 * 179.97438 * 4 3 2 6 6 C 1.50703 * 115.54956 * 330.05094 * 5 4 3 7 7 O 1.21286 * 120.00029 * 124.35099 * 6 5 4 8 8 N 1.34781 * 119.99743 * 304.34107 * 6 5 4 9 9 C 1.46497 * 119.99765 * 185.01478 * 8 6 5 10 10 C 1.53004 * 109.46922 * 184.11513 * 9 8 6 11 11 H 1.09001 * 109.71125 * 59.79815 * 10 9 8 12 12 C 1.53712 * 109.74497 * 180.56942 * 10 9 8 13 13 O 1.42958 * 109.14532 * 172.16082 * 12 10 9 14 14 C 1.42956 * 114.17154 * 297.28670 * 13 12 10 15 15 C 1.53304 * 109.21850 * 62.58022 * 14 13 12 16 16 N 1.47142 * 108.38650 * 307.69952 * 15 14 13 17 17 C 1.36937 * 120.98566 * 230.51265 * 16 15 14 18 18 H 1.08001 * 120.00358 * 148.57326 * 17 16 15 19 19 C 1.38816 * 119.99650 * 328.57317 * 17 16 15 20 20 N 1.31618 * 120.00030 * 350.00697 * 19 17 16 21 21 Si 1.86798 * 119.99815 * 170.00963 * 19 17 16 22 22 H 1.48496 * 109.47089 * 185.06503 * 21 19 17 23 23 H 1.48507 * 109.47032 * 305.06175 * 21 19 17 24 24 H 1.48500 * 109.47436 * 65.06152 * 21 19 17 25 25 C 1.53004 * 117.49758 * 115.71396 * 5 4 3 26 26 C 1.53000 * 117.50040 * 184.37538 * 5 4 3 27 27 O 1.34036 * 106.44376 * 0.24147 * 4 3 2 28 28 N 1.20922 * 111.56890 * 359.56174 * 27 4 3 29 29 H 1.09005 * 109.46561 * 90.00198 * 1 2 3 30 30 H 1.08992 * 109.47196 * 210.00133 * 1 2 3 31 31 H 1.08995 * 109.47231 * 330.00424 * 1 2 3 32 32 H 1.08003 * 128.00843 * 359.96023 * 3 2 1 33 33 H 0.96997 * 119.99847 * 5.02274 * 8 6 5 34 34 H 1.08996 * 109.47611 * 64.11218 * 9 8 6 35 35 H 1.09001 * 109.47040 * 304.10986 * 9 8 6 36 36 H 1.09004 * 109.66032 * 52.19839 * 12 10 9 37 37 H 1.08997 * 109.44665 * 291.99789 * 12 10 9 38 38 H 1.08998 * 109.51589 * 302.66218 * 14 13 12 39 39 H 1.08996 * 109.55864 * 182.52929 * 14 13 12 40 40 H 1.09008 * 109.68205 * 187.97604 * 15 14 13 41 41 H 1.09006 * 109.71088 * 67.44195 * 15 14 13 42 42 H 0.97001 * 120.00065 * 180.02562 * 20 19 17 43 43 H 1.09006 * 117.50069 * 215.00109 * 25 5 4 44 44 H 1.08997 * 117.50077 * 0.03076 * 25 5 4 45 45 H 1.09000 * 117.49826 * 359.97438 * 26 5 4 46 46 H 1.09001 * 117.50045 * 144.99822 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6069 0.0006 5 6 4.9021 1.3696 0.0003 6 6 4.8665 2.7142 -0.6794 7 8 5.2061 3.7089 -0.0742 8 7 4.4574 2.8113 -1.9599 9 6 4.5264 4.0989 -2.6553 10 6 3.9113 3.9593 -4.0492 11 1 2.8703 3.6478 -3.9622 12 6 3.9933 5.3037 -4.7900 13 8 3.5857 5.1166 -6.1475 14 6 4.4222 4.2286 -6.8927 15 6 4.3661 2.8330 -6.2607 16 7 4.6641 2.9612 -4.8254 17 6 5.6099 2.1711 -4.2284 18 1 6.1821 2.5501 -3.3946 19 6 5.8331 0.8829 -4.6951 20 7 5.0113 0.3497 -5.5740 21 14 7.3000 -0.0937 -4.0755 22 1 7.3844 -1.3806 -4.8117 23 1 8.5438 0.6865 -4.2981 24 1 7.1379 -0.3634 -2.6242 25 6 5.8092 1.2202 1.2234 26 6 6.1964 0.5602 -0.1024 27 8 3.4538 -0.7252 -0.0045 28 7 2.2869 -1.0422 0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 2.0710 2.1744 -0.0006 33 1 4.1171 2.0287 -2.4210 34 1 5.5679 4.4070 -2.7469 35 1 3.9744 4.8482 -2.0879 36 1 5.0182 5.6740 -4.7654 37 1 3.3332 6.0246 -4.3078 38 1 5.4486 4.5949 -6.8757 39 1 4.0715 4.1758 -7.9234 40 1 5.1057 2.1862 -6.7328 41 1 3.3704 2.4094 -6.3926 42 1 5.1671 -0.5506 -5.8998 43 1 6.3803 2.0944 1.5363 44 1 5.4662 0.5698 2.0279 45 1 6.1078 -0.5242 -0.1694 46 1 7.0221 1.0000 -0.6617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326655674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:46 Heat of formation + Delta-G solvation = 22.326992 kcal Electronic energy + Delta-G solvation = -30829.352563 eV Core-core repulsion = 26723.867000 eV Total energy + Delta-G solvation = -4105.485563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.99541 -41.24807 -40.04700 -37.89611 -36.88714 -35.80999 -35.30826 -33.30304 -32.54304 -32.08491 -29.63062 -29.03448 -27.62837 -25.37059 -25.17579 -24.33525 -23.57696 -23.18899 -22.05512 -21.39354 -20.40016 -19.19999 -18.64284 -18.35232 -17.59702 -17.53816 -17.33003 -16.50733 -16.35374 -16.23182 -15.96000 -15.57380 -15.32873 -15.15197 -14.86801 -14.64141 -14.34674 -14.23549 -14.21637 -13.92131 -13.58179 -13.41233 -13.10638 -12.84630 -12.69832 -12.61025 -12.50774 -12.40600 -12.21757 -12.09245 -12.01774 -11.86640 -11.82218 -11.30464 -11.02754 -11.02107 -10.63671 -10.54423 -10.24612 -9.91044 -8.61070 -7.85992 -5.38219 0.30886 1.17558 1.28766 1.46337 1.48993 1.52959 1.88012 2.27581 2.47936 2.72243 3.03776 3.15070 3.21505 3.30728 3.43278 3.61353 3.70299 3.79502 3.99309 4.01890 4.21550 4.22644 4.32780 4.46228 4.47227 4.55676 4.59809 4.61875 4.63919 4.65929 4.66376 4.75138 4.80129 4.84505 4.86659 5.00876 5.06160 5.11052 5.20281 5.29907 5.48656 5.63018 5.68600 6.30017 6.37328 6.57741 7.10474 7.16611 7.17583 7.77379 8.33906 9.17734 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.004968 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.482326 B = 5634.284074 C = 6190.887162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.021 3.979 3 C -0.225 4.225 4 C 0.014 3.986 5 C -0.109 4.109 6 C 0.559 3.441 7 O -0.568 6.568 8 N -0.688 5.688 9 C 0.140 3.860 10 C 0.125 3.875 11 H 0.033 0.967 12 C 0.058 3.942 13 O -0.399 6.399 14 C 0.047 3.953 15 C 0.150 3.850 16 N -0.604 5.604 17 C -0.244 4.244 18 H 0.074 0.926 19 C -0.034 4.034 20 N -0.928 5.928 21 Si 0.934 3.066 22 H -0.306 1.306 23 H -0.285 1.285 24 H -0.250 1.250 25 C -0.102 4.102 26 C -0.144 4.144 27 O 0.085 5.915 28 N -0.392 5.392 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.182 0.818 33 H 0.410 0.590 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.118 0.882 38 H 0.045 0.955 39 H 0.102 0.898 40 H 0.065 0.935 41 H 0.002 0.998 42 H 0.247 0.753 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.116 0.884 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 4.000 10.022 11.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.137 4.137 3 C -0.246 4.246 4 C -0.050 4.050 5 C -0.113 4.113 6 C 0.344 3.656 7 O -0.448 6.448 8 N -0.337 5.337 9 C 0.017 3.983 10 C 0.019 3.981 11 H 0.050 0.950 12 C -0.020 4.020 13 O -0.317 6.317 14 C -0.030 4.030 15 C 0.024 3.976 16 N -0.330 5.330 17 C -0.374 4.374 18 H 0.091 0.909 19 C -0.230 4.230 20 N -0.574 5.574 21 Si 0.762 3.238 22 H -0.233 1.233 23 H -0.211 1.211 24 H -0.174 1.174 25 C -0.139 4.139 26 C -0.181 4.181 27 O 0.022 5.978 28 N -0.101 5.101 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.199 0.801 33 H 0.248 0.752 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.136 0.864 38 H 0.063 0.937 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.020 0.980 42 H 0.056 0.944 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.134 0.866 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.171 3.322 10.270 11.572 hybrid contribution 0.771 -0.761 -0.569 1.223 sum -3.400 2.561 9.701 10.594 Atomic orbital electron populations 1.20347 0.83265 1.05215 1.04356 1.24169 1.00686 0.88034 1.00856 1.22527 0.90578 1.01788 1.09732 1.23032 0.96070 0.83483 1.02370 1.19454 0.88288 0.94462 1.09134 1.18993 0.77109 0.87932 0.81612 1.90650 1.50994 1.37532 1.65657 1.46079 1.62605 1.13546 1.11451 1.21202 1.00900 0.85111 0.91123 1.21648 0.94451 0.91365 0.90673 0.94984 1.23069 1.00669 0.95973 0.82325 1.87801 1.54561 1.65877 1.23476 1.23194 0.93895 0.90465 0.95482 1.21225 0.98059 0.93664 0.84666 1.44287 1.43054 1.41669 1.04017 1.19257 1.11227 0.92230 1.14652 0.90878 1.25706 1.00013 0.97350 0.99977 1.70104 1.37710 1.14899 1.34659 0.85853 0.80378 0.77645 0.79894 1.23265 1.21094 1.17391 1.23292 0.97068 1.03297 0.90223 1.23263 0.93734 1.00120 1.01020 1.84761 1.21973 1.22596 1.68422 1.73824 0.89418 1.24984 1.21830 0.89478 0.89775 0.87608 0.80109 0.75245 0.92398 0.89589 0.92938 0.86446 0.93669 0.88001 0.91640 0.98000 0.94377 0.85972 0.85442 0.86620 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 10.47 71.24 0.75 -0.67 16 2 C 0.02 0.60 7.33 43.58 0.32 0.91 16 3 C -0.23 -6.37 10.59 22.40 0.24 -6.13 16 4 C 0.01 0.43 6.64 25.04 0.17 0.60 16 5 C -0.11 -3.27 2.45 -53.67 -0.13 -3.40 16 6 C 0.56 19.01 6.77 87.66 0.59 19.61 16 7 O -0.57 -21.17 16.47 -3.05 -0.05 -21.22 16 8 N -0.69 -24.42 3.88 -463.05 -1.79 -26.22 16 9 C 0.14 4.72 4.47 86.38 0.39 5.10 16 10 C 0.12 4.56 3.24 45.11 0.15 4.71 16 11 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 12 C 0.06 1.83 6.31 72.22 0.46 2.29 16 13 O -0.40 -14.29 10.74 -148.98 -1.60 -15.89 16 14 C 0.05 1.73 6.99 72.08 0.50 2.23 16 15 C 0.15 6.75 5.37 86.36 0.46 7.21 16 16 N -0.60 -26.90 3.02 -672.92 -2.03 -28.93 16 17 C -0.24 -11.62 6.95 84.03 0.58 -11.04 16 18 H 0.07 3.45 5.84 -2.91 -0.02 3.43 16 19 C -0.03 -1.72 5.07 84.86 0.43 -1.28 16 20 N -0.93 -50.90 11.11 21.65 0.24 -50.66 16 21 Si 0.93 41.18 29.57 68.60 2.03 43.21 16 22 H -0.31 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.25 -10.00 6.84 99.48 0.68 -9.32 16 25 C -0.10 -2.40 9.75 30.62 0.30 -2.10 16 26 C -0.14 -4.02 9.65 30.62 0.30 -3.72 16 27 O 0.08 2.82 10.96 71.67 0.79 3.60 16 28 N -0.39 -12.92 12.07 -49.56 -0.60 -13.52 16 29 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.18 4.52 8.06 -2.91 -0.02 4.50 16 33 H 0.41 16.41 7.02 -92.71 -0.65 15.76 16 34 H 0.06 2.08 7.56 -2.39 -0.02 2.06 16 35 H 0.09 2.51 8.12 -2.39 -0.02 2.49 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.07 3.31 6.32 -2.38 -0.02 3.30 16 41 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 42 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 43 H 0.12 2.80 7.83 -2.38 -0.02 2.78 16 44 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.12 3.11 8.00 -2.39 -0.02 3.10 16 46 H 0.10 3.05 8.11 -2.39 -0.02 3.03 16 Total: -1.00 -62.01 377.52 2.80 -59.21 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: 0.33 Total: 36.10 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 5.50 Total: 14.32 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -4.19 Total: -119.33 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.86 Total: -33.51 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -62.01 2.80 -59.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326655674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.541 kcal (2) G-P(sol) polarization free energy of solvation -62.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds