Wall clock time and date at job start Tue Mar 31 2020 19:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50694 * 120.00206 * 2 1 4 4 N 1.46497 * 109.47217 * 124.99990 * 3 2 1 5 5 C 1.46505 * 120.00036 * 274.67792 * 4 3 2 6 6 C 1.50699 * 109.47351 * 263.31837 * 5 4 3 7 7 H 1.08008 * 119.99908 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00138 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00199 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00150 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46902 * 90.00028 * 10 8 6 12 12 H 1.48498 * 109.47211 * 210.00107 * 10 8 6 13 13 H 1.48497 * 109.47180 * 330.00217 * 10 8 6 14 14 C 1.34781 * 120.00520 * 94.68317 * 4 3 2 15 15 O 1.21363 * 119.99293 * 353.83259 * 14 4 3 16 16 C 1.49316 * 120.00453 * 173.84143 * 14 4 3 17 17 O 1.21409 * 119.99747 * 357.34237 * 16 14 4 18 18 N 1.34773 * 120.00112 * 177.34690 * 16 14 4 19 19 C 1.40405 * 120.00059 * 185.44533 * 18 16 14 20 20 C 1.41859 * 128.07445 * 317.19737 * 19 18 16 21 21 C 1.50704 * 126.81468 * 359.97438 * 20 19 18 22 22 N 1.30153 * 106.37277 * 180.02562 * 20 19 18 23 23 O 1.20888 * 111.77228 * 359.71933 * 22 20 19 24 24 C 1.34233 * 111.66564 * 0.45765 * 23 22 20 25 25 C 1.50703 * 126.83027 * 179.82307 * 24 23 22 26 26 C 1.52991 * 109.47417 * 299.68313 * 25 24 23 27 27 C 1.53005 * 109.46904 * 59.68641 * 25 24 23 28 28 H 1.08004 * 120.00605 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99867 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99867 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47123 * 4.99895 * 3 2 1 32 32 H 1.09002 * 109.47209 * 244.99584 * 3 2 1 33 33 H 1.09009 * 109.46805 * 23.31425 * 5 4 3 34 34 H 1.08998 * 109.47102 * 143.31413 * 5 4 3 35 35 H 0.96996 * 120.00330 * 179.97438 * 9 8 6 36 36 H 0.96993 * 120.00014 * 5.44382 * 18 16 14 37 37 H 1.08997 * 109.47237 * 97.47471 * 21 20 19 38 38 H 1.09009 * 109.47167 * 217.47380 * 21 20 19 39 39 H 1.09000 * 109.47420 * 337.47001 * 21 20 19 40 40 H 1.08999 * 109.46840 * 179.68323 * 25 24 23 41 41 H 1.09002 * 109.47236 * 59.99658 * 26 25 24 42 42 H 1.09002 * 109.47465 * 300.00626 * 26 25 24 43 43 H 1.08998 * 109.47542 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.47113 * 299.99515 * 27 25 24 45 45 H 1.08997 * 109.47240 * 59.99991 * 27 25 24 46 46 H 1.08998 * 109.46610 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5302 1.7688 2.4507 6 6 2.8711 3.2236 2.6465 7 1 3.3825 3.7681 1.8664 8 6 2.5304 3.8594 3.8215 9 7 1.9074 3.1964 4.7712 10 14 2.9537 5.6625 4.0645 11 1 1.8329 6.5045 3.5743 12 1 3.1777 5.9282 5.5083 13 1 4.1869 5.9883 3.3041 14 6 4.2761 0.9546 0.9587 15 8 4.6333 0.4874 -0.1029 16 6 5.2571 1.1112 2.0734 17 8 4.9114 1.6228 3.1188 18 7 6.5263 0.6849 1.9190 19 6 7.4177 0.7269 3.0030 20 6 7.5935 1.7672 3.9513 21 6 6.8498 3.0769 4.0033 22 7 8.5252 1.3665 4.7670 23 8 8.9335 0.2666 4.4757 24 6 8.3145 -0.2200 3.3886 25 6 8.5599 -1.5532 2.7301 26 6 10.0153 -1.6322 2.2651 27 6 8.2829 -2.6756 3.7324 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3586 2.1315 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 1.4503 1.6364 2.5185 34 1 3.0184 1.1740 3.2227 35 1 1.6680 3.6436 5.5980 36 1 6.8239 0.3491 1.0592 37 1 6.0334 3.0029 4.7216 38 1 7.5320 3.8702 4.3091 39 1 6.4463 3.3051 3.0168 40 1 7.8977 -1.6615 1.8712 41 1 10.6775 -1.5238 3.1241 42 1 10.2126 -0.8326 1.5512 43 1 10.1929 -2.5967 1.7893 44 1 8.9452 -2.5673 4.5913 45 1 7.2460 -2.6194 4.0636 46 1 8.4600 -3.6399 3.2559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336788491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:40 Heat of formation + Delta-G solvation = 21.039212 kcal Electronic energy + Delta-G solvation = -30281.121889 eV Core-core repulsion = 26175.580484 eV Total energy + Delta-G solvation = -4105.541405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.75773 -40.25994 -38.21004 -36.37092 -35.88804 -35.01321 -33.41713 -33.05480 -32.11144 -30.01934 -28.24250 -27.60593 -27.37323 -26.55791 -24.21901 -23.03491 -22.95397 -21.48194 -20.10955 -19.64757 -18.95493 -17.61979 -17.41706 -17.02458 -16.59915 -16.18262 -15.63332 -15.35020 -15.23906 -14.83997 -14.51513 -14.30881 -13.94700 -13.72410 -13.43297 -13.06899 -12.91839 -12.73543 -12.68296 -12.39425 -12.31665 -12.16351 -11.72110 -11.56999 -11.54062 -11.48721 -11.44616 -11.20308 -11.00388 -10.93295 -10.85073 -10.55582 -10.32749 -10.05533 -9.75200 -9.39720 -9.25311 -8.76489 -8.38987 -8.33768 -7.95334 -6.05725 -4.07429 1.45913 2.00400 2.32798 2.47119 2.78897 3.27578 3.30348 3.35597 3.37690 3.80193 4.07081 4.35412 4.42316 4.56463 4.76218 4.84734 4.87443 5.05889 5.21590 5.23953 5.31319 5.42137 5.42282 5.50165 5.60320 5.67018 5.76327 5.79061 5.85570 6.01577 6.04026 6.04690 6.07099 6.18860 6.20583 6.54596 6.61379 6.69209 6.81882 6.95195 7.25993 7.32126 7.46411 7.81864 8.00455 8.14440 8.28386 8.45522 8.59630 8.91178 9.54666 11.03317 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009927 B = 0.004765 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.891586 B = 5875.074968 C = 7975.560631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.159 4.159 3 C 0.141 3.859 4 N -0.555 5.555 5 C 0.233 3.767 6 C -0.510 4.510 7 H 0.054 0.946 8 C 0.072 3.928 9 N -0.890 5.890 10 Si 0.888 3.112 11 H -0.282 1.282 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.511 3.489 15 O -0.560 6.560 16 C 0.485 3.515 17 O -0.419 6.419 18 N -0.635 5.635 19 C 0.048 3.952 20 C 0.044 3.956 21 C -0.065 4.065 22 N -0.365 5.365 23 O 0.104 5.896 24 C -0.055 4.055 25 C -0.007 4.007 26 C -0.148 4.148 27 C -0.148 4.148 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.034 0.966 34 H 0.060 0.940 35 H 0.262 0.738 36 H 0.417 0.583 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.379 -9.591 -6.509 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.179 4.179 3 C 0.018 3.982 4 N -0.284 5.284 5 C 0.115 3.885 6 C -0.549 4.549 7 H 0.072 0.928 8 C -0.131 4.131 9 N -0.529 5.529 10 Si 0.716 3.284 11 H -0.208 1.208 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.293 3.707 15 O -0.441 6.441 16 C 0.266 3.734 17 O -0.284 6.284 18 N -0.289 5.289 19 C -0.051 4.051 20 C -0.116 4.116 21 C -0.122 4.122 22 N -0.072 5.072 23 O 0.041 5.959 24 C -0.122 4.122 25 C -0.026 4.026 26 C -0.206 4.206 27 C -0.205 4.205 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.255 0.745 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.703 -8.849 -4.976 14.043 hybrid contribution -0.254 0.795 -0.743 1.117 sum 9.449 -8.055 -5.719 13.670 Atomic orbital electron populations 1.23807 0.95737 1.01777 1.00967 1.23284 0.96104 0.98975 0.99495 1.20607 0.92194 0.95406 0.89980 1.48262 1.07138 1.59666 1.13367 1.19882 0.95814 0.96311 0.76540 1.21134 1.38081 0.94233 1.01455 0.92794 1.24756 0.94990 0.97793 0.95534 1.69907 1.40201 1.36277 1.06471 0.86660 0.78807 0.85452 0.77471 1.20806 1.21121 1.19873 1.19689 0.83846 0.79931 0.87238 1.90656 1.79181 1.46340 1.27964 1.20430 0.82396 0.80719 0.89838 1.91070 1.75973 1.34506 1.26869 1.42396 1.08991 1.65996 1.11504 1.17996 0.97484 0.94280 0.95340 1.23580 0.95700 0.99078 0.93274 1.20211 0.98407 0.88529 1.05052 1.73794 1.14699 0.96526 1.22178 1.84798 1.50609 1.24235 1.36212 1.23927 0.99646 0.97395 0.91187 1.19689 0.98939 0.86624 0.97363 1.21887 0.94429 1.02404 1.01872 1.21858 1.02681 0.97057 0.98946 0.88686 0.88301 0.87625 0.89326 0.89593 0.94785 0.92272 0.92837 0.74522 0.88571 0.91836 0.90134 0.88363 0.91763 0.92182 0.91445 0.91762 0.92007 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 14.32 29.02 0.42 -2.06 16 2 C -0.16 -2.43 9.84 -36.03 -0.35 -2.79 16 3 C 0.14 2.40 5.82 -5.20 -0.03 2.37 16 4 N -0.55 -11.25 2.46 -176.99 -0.44 -11.69 16 5 C 0.23 5.57 4.78 -5.19 -0.02 5.54 16 6 C -0.51 -13.22 7.58 -34.44 -0.26 -13.48 16 7 H 0.05 1.42 7.81 -52.48 -0.41 1.01 16 8 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 9 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 10 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 14 C 0.51 10.08 7.66 -11.65 -0.09 9.99 16 15 O -0.56 -10.89 16.05 5.49 0.09 -10.80 16 16 C 0.49 9.42 7.18 -11.65 -0.08 9.34 16 17 O -0.42 -9.44 8.49 5.45 0.05 -9.39 16 18 N -0.63 -10.12 5.34 -10.09 -0.05 -10.17 16 19 C 0.05 0.77 6.62 -83.35 -0.55 0.22 16 20 C 0.04 0.80 6.97 -81.92 -0.57 0.23 16 21 C -0.06 -1.20 8.59 36.01 0.31 -0.89 16 22 N -0.36 -6.38 12.06 33.57 0.40 -5.98 16 23 O 0.10 1.58 11.20 16.67 0.19 1.77 16 24 C -0.05 -0.75 6.03 -35.11 -0.21 -0.96 16 25 C -0.01 -0.07 3.34 -91.77 -0.31 -0.37 16 26 C -0.15 -1.16 9.17 37.15 0.34 -0.82 16 27 C -0.15 -1.33 9.18 37.16 0.34 -0.99 16 28 H 0.09 1.10 8.06 -52.48 -0.42 0.68 16 29 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 30 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 31 H 0.09 1.49 7.76 -51.93 -0.40 1.08 16 32 H 0.09 1.41 7.37 -51.93 -0.38 1.03 16 33 H 0.03 0.85 8.02 -51.92 -0.42 0.44 16 34 H 0.06 1.55 6.02 -51.93 -0.31 1.24 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.42 5.62 8.30 -40.82 -0.34 5.29 16 37 H 0.10 2.01 7.68 -51.93 -0.40 1.61 16 38 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 39 H 0.08 1.57 6.98 -51.93 -0.36 1.20 16 40 H 0.10 0.91 8.02 -51.93 -0.42 0.49 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -30.04 389.53 -6.15 -36.19 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.79 Total: 5.47 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -1.18 Total: 7.15 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.65 Total: -52.23 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.32 Total: -18.43 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.04 -6.15 -36.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336788491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.226 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds