Wall clock time and date at job start Tue Mar 31 2020 19:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50694 * 120.00206 * 2 1 4 4 N 1.46497 * 109.47217 * 124.99990 * 3 2 1 5 5 C 1.46505 * 120.00036 * 274.67792 * 4 3 2 6 6 C 1.50699 * 109.47351 * 263.31837 * 5 4 3 7 7 H 1.08008 * 119.99908 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00138 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00199 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00150 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46902 * 90.00028 * 10 8 6 12 12 H 1.48498 * 109.47211 * 210.00107 * 10 8 6 13 13 H 1.48497 * 109.47180 * 330.00217 * 10 8 6 14 14 C 1.34781 * 120.00520 * 94.68317 * 4 3 2 15 15 O 1.21363 * 119.99293 * 353.83259 * 14 4 3 16 16 C 1.49316 * 120.00453 * 173.84143 * 14 4 3 17 17 O 1.21409 * 119.99747 * 357.34237 * 16 14 4 18 18 N 1.34773 * 120.00112 * 177.34690 * 16 14 4 19 19 C 1.40405 * 120.00059 * 185.44533 * 18 16 14 20 20 C 1.41859 * 128.07445 * 317.19737 * 19 18 16 21 21 C 1.50704 * 126.81468 * 359.97438 * 20 19 18 22 22 N 1.30153 * 106.37277 * 180.02562 * 20 19 18 23 23 O 1.20888 * 111.77228 * 359.71933 * 22 20 19 24 24 C 1.34233 * 111.66564 * 0.45765 * 23 22 20 25 25 C 1.50703 * 126.83027 * 179.82307 * 24 23 22 26 26 C 1.52991 * 109.47417 * 299.68313 * 25 24 23 27 27 C 1.53005 * 109.46904 * 59.68641 * 25 24 23 28 28 H 1.08004 * 120.00605 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99867 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99867 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47123 * 4.99895 * 3 2 1 32 32 H 1.09002 * 109.47209 * 244.99584 * 3 2 1 33 33 H 1.09009 * 109.46805 * 23.31425 * 5 4 3 34 34 H 1.08998 * 109.47102 * 143.31413 * 5 4 3 35 35 H 0.96996 * 120.00330 * 179.97438 * 9 8 6 36 36 H 0.96993 * 120.00014 * 5.44382 * 18 16 14 37 37 H 1.08997 * 109.47237 * 97.47471 * 21 20 19 38 38 H 1.09009 * 109.47167 * 217.47380 * 21 20 19 39 39 H 1.09000 * 109.47420 * 337.47001 * 21 20 19 40 40 H 1.08999 * 109.46840 * 179.68323 * 25 24 23 41 41 H 1.09002 * 109.47236 * 59.99658 * 26 25 24 42 42 H 1.09002 * 109.47465 * 300.00626 * 26 25 24 43 43 H 1.08998 * 109.47542 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.47113 * 299.99515 * 27 25 24 45 45 H 1.08997 * 109.47240 * 59.99991 * 27 25 24 46 46 H 1.08998 * 109.46610 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5302 1.7688 2.4507 6 6 2.8711 3.2236 2.6465 7 1 3.3825 3.7681 1.8664 8 6 2.5304 3.8594 3.8215 9 7 1.9074 3.1964 4.7712 10 14 2.9537 5.6625 4.0645 11 1 1.8329 6.5045 3.5743 12 1 3.1777 5.9282 5.5083 13 1 4.1869 5.9883 3.3041 14 6 4.2761 0.9546 0.9587 15 8 4.6333 0.4874 -0.1029 16 6 5.2571 1.1112 2.0734 17 8 4.9114 1.6228 3.1188 18 7 6.5263 0.6849 1.9190 19 6 7.4177 0.7269 3.0030 20 6 7.5935 1.7672 3.9513 21 6 6.8498 3.0769 4.0033 22 7 8.5252 1.3665 4.7670 23 8 8.9335 0.2666 4.4757 24 6 8.3145 -0.2200 3.3886 25 6 8.5599 -1.5532 2.7301 26 6 10.0153 -1.6322 2.2651 27 6 8.2829 -2.6756 3.7324 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3586 2.1315 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 1.4503 1.6364 2.5185 34 1 3.0184 1.1740 3.2227 35 1 1.6680 3.6436 5.5980 36 1 6.8239 0.3491 1.0592 37 1 6.0334 3.0029 4.7216 38 1 7.5320 3.8702 4.3091 39 1 6.4463 3.3051 3.0168 40 1 7.8977 -1.6615 1.8712 41 1 10.6775 -1.5238 3.1241 42 1 10.2126 -0.8326 1.5512 43 1 10.1929 -2.5967 1.7893 44 1 8.9452 -2.5673 4.5913 45 1 7.2460 -2.6194 4.0636 46 1 8.4600 -3.6399 3.2559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336788491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:39 Heat of formation + Delta-G solvation = 3.500160 kcal Electronic energy + Delta-G solvation = -30281.882440 eV Core-core repulsion = 26175.580484 eV Total energy + Delta-G solvation = -4106.301956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.07778 -41.81546 -39.72736 -37.71236 -37.11324 -36.30254 -35.02275 -34.49526 -33.79356 -31.24379 -29.68473 -29.42531 -28.05820 -28.02800 -25.76151 -24.75452 -24.03720 -22.91421 -21.43576 -20.83824 -20.29686 -18.99867 -18.76086 -18.70026 -18.39296 -17.63152 -16.85338 -16.82454 -16.76573 -16.17943 -16.05206 -15.80027 -15.17075 -14.91260 -14.60986 -14.35392 -14.31622 -14.16798 -14.07288 -14.02957 -13.64672 -13.51218 -13.02098 -13.01056 -12.85216 -12.78844 -12.70005 -12.39153 -12.36968 -12.26298 -12.19506 -11.94722 -11.85797 -11.68246 -11.61830 -10.73844 -10.64694 -10.45742 -10.13102 -9.73935 -9.58183 -8.11886 -6.18404 0.18283 0.51946 0.95836 1.18029 1.38234 1.41232 1.48947 1.52546 2.08828 2.24139 2.42459 2.65626 3.16143 3.23489 3.27215 3.42878 3.77841 3.99890 4.04261 4.13170 4.15377 4.17254 4.43651 4.47577 4.55724 4.58190 4.71693 4.78294 4.83165 4.83747 4.94241 4.98107 5.04043 5.10444 5.14243 5.20297 5.34902 5.38400 5.39631 5.48450 5.68791 5.76971 5.84936 6.02191 6.13279 6.29843 6.75079 6.84942 7.07843 7.18104 7.46948 8.96619 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009927 B = 0.004765 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.891586 B = 5875.074968 C = 7975.560631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.182 4.182 3 C 0.138 3.862 4 N -0.560 5.560 5 C 0.255 3.745 6 C -0.506 4.506 7 H 0.047 0.953 8 C 0.028 3.972 9 N -0.923 5.923 10 Si 0.940 3.060 11 H -0.272 1.272 12 H -0.288 1.288 13 H -0.271 1.271 14 C 0.511 3.489 15 O -0.555 6.555 16 C 0.485 3.515 17 O -0.457 6.457 18 N -0.614 5.614 19 C 0.020 3.980 20 C 0.022 3.978 21 C -0.054 4.054 22 N -0.380 5.380 23 O 0.113 5.887 24 C -0.023 4.023 25 C -0.009 4.009 26 C -0.145 4.145 27 C -0.147 4.147 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.020 0.980 34 H 0.035 0.965 35 H 0.261 0.739 36 H 0.430 0.570 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.043 0.957 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.416 -10.902 -7.939 17.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.201 4.201 3 C 0.017 3.983 4 N -0.290 5.290 5 C 0.135 3.865 6 C -0.544 4.544 7 H 0.065 0.935 8 C -0.171 4.171 9 N -0.563 5.563 10 Si 0.766 3.234 11 H -0.198 1.198 12 H -0.214 1.214 13 H -0.195 1.195 14 C 0.293 3.707 15 O -0.436 6.436 16 C 0.266 3.734 17 O -0.325 6.325 18 N -0.268 5.268 19 C -0.079 4.079 20 C -0.138 4.138 21 C -0.111 4.111 22 N -0.087 5.087 23 O 0.050 5.950 24 C -0.091 4.091 25 C -0.028 4.028 26 C -0.202 4.202 27 C -0.205 4.205 28 H 0.137 0.863 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.038 0.962 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.270 0.730 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.111 0.889 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.765 -10.169 -6.461 16.157 hybrid contribution -0.522 1.075 -0.351 1.246 sum 10.244 -9.093 -6.812 15.298 Atomic orbital electron populations 1.24062 0.95129 1.03167 0.97774 1.23145 0.96713 0.97900 1.02370 1.20766 0.91937 0.96689 0.88900 1.48197 1.07954 1.59848 1.12994 1.19344 0.94397 0.94960 0.77826 1.21285 1.36965 0.95169 1.01019 0.93467 1.25393 0.95097 1.01203 0.95442 1.70010 1.41701 1.37686 1.06897 0.85832 0.78843 0.81572 0.77116 1.19790 1.21390 1.19527 1.19743 0.83772 0.79801 0.87375 1.90647 1.79052 1.46147 1.27736 1.20483 0.83266 0.80396 0.89210 1.91071 1.76803 1.36593 1.28071 1.42113 1.07827 1.64804 1.12102 1.18068 0.98834 0.94947 0.96003 1.23599 0.96323 0.99445 0.94399 1.19986 0.97846 0.89927 1.03347 1.73772 1.14955 0.97441 1.22519 1.84779 1.50251 1.23489 1.36515 1.24666 0.97071 0.97842 0.89474 1.20015 1.00892 0.84376 0.97539 1.21888 0.92396 1.03906 1.01995 1.21881 1.01583 0.97988 0.99002 0.86342 0.87801 0.87666 0.89369 0.88998 0.96170 0.94737 0.93019 0.72967 0.91558 0.90227 0.91439 0.87309 0.91780 0.92243 0.88874 0.91645 0.93764 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 14.32 67.79 0.97 -3.10 16 2 C -0.18 -5.36 9.84 25.65 0.25 -5.11 16 3 C 0.14 4.67 5.82 85.63 0.50 5.17 16 4 N -0.56 -22.93 2.46 -832.24 -2.05 -24.98 16 5 C 0.25 12.50 4.78 85.63 0.41 12.91 16 6 C -0.51 -26.76 7.58 25.60 0.19 -26.56 16 7 H 0.05 2.52 7.81 -2.91 -0.02 2.49 16 8 C 0.03 1.52 5.46 84.65 0.46 1.98 16 9 N -0.92 -53.44 13.29 21.45 0.28 -53.15 16 10 Si 0.94 43.72 29.54 68.60 2.03 45.74 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 13 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 14 C 0.51 20.15 7.66 87.23 0.67 20.82 16 15 O -0.55 -20.99 16.05 -3.29 -0.05 -21.05 16 16 C 0.49 19.12 7.18 87.23 0.63 19.75 16 17 O -0.46 -21.38 8.49 -3.43 -0.03 -21.41 16 18 N -0.61 -19.33 5.34 -304.18 -1.62 -20.96 16 19 C 0.02 0.64 6.62 38.14 0.25 0.89 16 20 C 0.02 0.80 6.97 43.70 0.30 1.11 16 21 C -0.05 -2.07 8.59 71.24 0.61 -1.46 16 22 N -0.38 -13.28 12.06 -48.91 -0.59 -13.87 16 23 O 0.11 3.32 11.20 69.84 0.78 4.10 16 24 C -0.02 -0.61 6.03 25.17 0.15 -0.46 16 25 C -0.01 -0.15 3.34 -11.54 -0.04 -0.19 16 26 C -0.14 -1.77 9.17 71.98 0.66 -1.11 16 27 C -0.15 -2.26 9.18 71.98 0.66 -1.60 16 28 H 0.12 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.10 2.48 7.84 -2.91 -0.02 2.46 16 30 H 0.11 3.10 8.06 -2.91 -0.02 3.07 16 31 H 0.09 2.93 7.76 -2.39 -0.02 2.92 16 32 H 0.09 2.95 7.37 -2.39 -0.02 2.93 16 33 H 0.02 1.04 8.02 -2.38 -0.02 1.02 16 34 H 0.03 1.89 6.02 -2.39 -0.01 1.88 16 35 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.43 11.03 8.30 -92.71 -0.77 10.26 16 37 H 0.07 2.94 7.68 -2.39 -0.02 2.92 16 38 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 39 H 0.07 2.73 6.98 -2.39 -0.02 2.71 16 40 H 0.11 1.68 8.02 -2.39 -0.02 1.66 16 41 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -65.89 389.53 5.66 -60.22 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.23 Total: 22.31 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 6.69 Total: 23.04 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -3.98 Total: -112.96 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: 0.70 Total: -38.36 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -65.89 5.66 -60.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336788491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.722 kcal (2) G-P(sol) polarization free energy of solvation -65.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds