Wall clock time and date at job start Tue Mar 31 2020 19:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40371 * 126.64775 * 2 1 4 4 C 1.35131 * 107.11677 * 180.30190 * 3 2 1 5 5 O 1.33923 * 108.76857 * 359.74537 * 4 3 2 6 6 C 1.34926 * 109.38451 * 0.02562 * 5 4 3 7 7 C 1.46657 * 125.98453 * 180.02562 * 6 5 4 8 8 O 1.21698 * 119.99402 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00467 * 0.02562 * 7 6 5 10 10 C 1.46494 * 120.00121 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47286 * 186.88530 * 10 9 7 12 12 H 1.09000 * 110.72921 * 302.77269 * 11 10 9 13 13 C 1.54939 * 110.66899 * 179.67330 * 11 10 9 14 14 C 1.54595 * 102.92097 * 204.15627 * 13 11 10 15 15 C 1.53987 * 105.14307 * 21.95645 * 14 13 11 16 16 N 1.47904 * 107.05753 * 1.22563 * 15 14 13 17 17 C 1.46904 * 111.00406 * 214.15264 * 16 15 14 18 18 C 1.50705 * 109.46556 * 63.67939 * 17 16 15 19 19 O 1.21292 * 120.00277 * 352.97411 * 18 17 16 20 20 N 1.34779 * 119.99608 * 172.97082 * 18 17 16 21 21 C 1.37096 * 119.99936 * 180.02562 * 20 18 17 22 22 H 1.08007 * 119.99892 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00170 * 180.27549 * 21 20 18 24 24 N 1.31412 * 119.99796 * 359.72628 * 23 21 20 25 25 Si 1.86797 * 120.00268 * 179.72206 * 23 21 20 26 26 H 1.48505 * 109.46997 * 60.00349 * 25 23 21 27 27 H 1.48503 * 109.47306 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47267 * 300.00422 * 25 23 21 29 29 H 1.09006 * 109.47027 * 270.12568 * 1 2 3 30 30 H 1.08998 * 109.47419 * 30.13136 * 1 2 3 31 31 H 1.08998 * 109.46921 * 150.12922 * 1 2 3 32 32 H 1.08009 * 126.43817 * 0.04830 * 3 2 1 33 33 H 1.07996 * 125.61416 * 179.78153 * 4 3 2 34 34 H 0.97003 * 119.99720 * 359.97438 * 9 7 6 35 35 H 1.09009 * 109.46900 * 66.88992 * 10 9 7 36 36 H 1.08998 * 109.47241 * 306.88983 * 10 9 7 37 37 H 1.09002 * 110.71955 * 85.79704 * 13 11 10 38 38 H 1.08996 * 110.72497 * 322.51382 * 13 11 10 39 39 H 1.08998 * 110.30640 * 263.04002 * 14 13 11 40 40 H 1.08994 * 110.39088 * 140.92107 * 14 13 11 41 41 H 1.08997 * 109.92145 * 241.87504 * 15 14 13 42 42 H 1.08998 * 110.08369 * 120.66661 * 15 14 13 43 43 H 1.09002 * 109.46831 * 303.68577 * 17 16 15 44 44 H 1.08995 * 109.47480 * 183.67947 * 17 16 15 45 45 H 0.96997 * 120.00075 * 0.02562 * 20 18 17 46 46 H 0.96998 * 119.99895 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6745 -0.0068 5 8 3.6006 -0.6646 -0.0053 6 6 2.3220 -1.0955 0.0019 7 6 1.8843 -2.4953 0.0062 8 8 0.6968 -2.7614 0.0122 9 7 2.7972 -3.4868 0.0035 10 6 2.3600 -4.8850 0.0084 11 6 3.5754 -5.7988 0.1769 12 1 4.3054 -5.6195 -0.6124 13 6 3.1428 -7.2865 0.1940 14 6 4.2931 -7.9721 0.9666 15 6 4.9517 -6.8484 1.7880 16 7 4.1925 -5.6090 1.5146 17 6 5.0774 -4.4364 1.5245 18 6 6.0811 -4.5552 0.4067 19 8 6.1450 -5.5761 -0.2451 20 7 6.9076 -3.5269 0.1311 21 6 7.8204 -3.6347 -0.8861 22 1 7.8773 -4.5438 -1.4665 23 6 8.6764 -2.5767 -1.1665 24 7 8.6075 -1.4708 -0.4600 25 14 9.9253 -2.7265 -2.5475 26 1 9.2176 -2.9651 -3.8311 27 1 10.7122 -1.4706 -2.6416 28 1 10.8392 -3.8630 -2.2674 29 1 -0.3633 0.0023 1.0277 30 1 -0.3634 0.8888 -0.5159 31 1 -0.3633 -0.8911 -0.5118 32 1 2.0306 2.1596 0.0007 33 1 4.5045 1.2917 -0.0120 34 1 3.7437 -3.2746 -0.0017 35 1 1.8618 -5.1131 -0.9340 36 1 1.6669 -5.0461 0.8341 37 1 3.0717 -7.6791 -0.8203 38 1 2.1974 -7.4073 0.7227 39 1 5.0124 -8.4031 0.2702 40 1 3.8993 -8.7435 1.6283 41 1 5.9899 -6.7233 1.4806 42 1 4.9054 -7.0854 2.8509 43 1 5.6011 -4.3846 2.4791 44 1 4.4843 -3.5324 1.3859 45 1 6.8567 -2.7106 0.6526 46 1 9.2053 -0.7324 -0.6555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481024430.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:10 Heat of formation + Delta-G solvation = -41.619700 kcal Electronic energy + Delta-G solvation = -30304.590889 eV Core-core repulsion = 26196.332389 eV Total energy + Delta-G solvation = -4108.258500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.60338 -40.09516 -38.95513 -37.21785 -34.81162 -34.06469 -33.79406 -31.99984 -31.26265 -30.72936 -29.60301 -27.53372 -26.70142 -25.00035 -24.14894 -22.49417 -21.18627 -20.79595 -20.47937 -19.74324 -19.17748 -18.12632 -17.76296 -16.60058 -16.27642 -15.95098 -15.65119 -15.56999 -15.00423 -14.71391 -14.52821 -14.17337 -13.99834 -13.85986 -13.84830 -13.37447 -13.07509 -12.92990 -12.83492 -12.49561 -12.40873 -12.10230 -11.80951 -11.76224 -11.56983 -11.20899 -11.16752 -11.03007 -10.84484 -10.71430 -10.54466 -10.34528 -10.23556 -9.96529 -9.65780 -9.49489 -9.27024 -8.98277 -8.47066 -8.09454 -7.61666 -6.55264 -3.96546 1.16180 2.39698 2.83506 3.08968 3.17365 3.21200 3.29075 3.39189 3.67794 4.06119 4.29049 4.75295 4.80549 4.84506 4.91948 4.97961 5.05212 5.13122 5.27007 5.48167 5.50436 5.56441 5.68208 5.70118 5.71234 5.76932 5.81105 5.92058 5.93984 5.97383 6.08755 6.10575 6.12215 6.15585 6.27757 6.34697 6.41271 6.52465 6.59569 6.65099 6.94935 7.19925 7.29735 7.41620 7.60175 7.89690 8.20906 8.43241 9.01948 9.36782 9.86071 10.60649 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007615 B = 0.005370 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3676.061772 B = 5212.851860 C = 8284.581658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.091 4.091 3 C -0.234 4.234 4 C 0.009 3.991 5 O -0.154 6.154 6 C -0.089 4.089 7 C 0.602 3.398 8 O -0.528 6.528 9 N -0.714 5.714 10 C 0.134 3.866 11 C 0.028 3.972 12 H 0.109 0.891 13 C -0.106 4.106 14 C -0.118 4.118 15 C 0.035 3.965 16 N -0.489 5.489 17 C 0.021 3.979 18 C 0.397 3.603 19 O -0.588 6.588 20 N -0.550 5.550 21 C -0.304 4.304 22 H 0.103 0.897 23 C 0.028 3.972 24 N -0.894 5.894 25 Si 0.929 3.071 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.273 1.273 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.154 0.846 33 H 0.211 0.789 34 H 0.408 0.592 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.393 0.607 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.853 1.448 3.264 11.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.253 4.253 4 C -0.061 4.061 5 O -0.048 6.048 6 C -0.141 4.141 7 C 0.389 3.611 8 O -0.407 6.407 9 N -0.368 5.368 10 C 0.011 3.989 11 C -0.080 4.080 12 H 0.126 0.874 13 C -0.145 4.145 14 C -0.156 4.156 15 C -0.093 4.093 16 N -0.212 5.212 17 C -0.112 4.112 18 C 0.183 3.817 19 O -0.476 6.476 20 N -0.184 5.184 21 C -0.434 4.434 22 H 0.121 0.879 23 C -0.175 4.175 24 N -0.534 5.534 25 Si 0.756 3.244 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.199 1.199 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.172 0.828 33 H 0.227 0.773 34 H 0.247 0.753 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.227 0.773 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.665 0.621 3.234 12.121 hybrid contribution 1.946 0.942 -0.906 2.344 sum -9.720 1.564 2.328 10.116 Atomic orbital electron populations 1.20389 0.88440 1.03342 1.02672 1.20584 0.97461 0.91021 1.00298 1.21702 0.92429 0.99970 1.11237 1.24460 0.99950 0.80671 1.01045 1.84167 1.27918 1.22749 1.70008 1.21901 0.81822 0.94848 1.15567 1.16538 0.85718 0.81945 0.76931 1.90804 1.15693 1.82571 1.51650 1.46310 1.10408 1.06524 1.73522 1.21459 0.96862 0.78701 1.01919 1.23504 0.95968 0.94538 0.94014 0.87357 1.22294 0.98371 0.93567 1.00267 1.22206 0.97395 0.97448 0.98552 1.22831 0.98711 0.89023 0.98744 1.65105 1.27321 1.02341 1.26478 1.22373 0.94331 0.95488 0.98967 1.20928 0.86279 0.85637 0.88877 1.90454 1.72847 1.30043 1.54229 1.42069 1.30869 1.14840 1.30648 1.19661 1.11617 1.02053 1.10052 0.87936 1.25276 0.98604 0.94928 0.98685 1.69600 1.38998 1.04732 1.40065 0.85939 0.80035 0.77580 0.80826 1.19840 1.20857 1.19857 0.90998 0.91725 0.89606 0.82849 0.77286 0.75270 0.91329 0.90404 0.91264 0.91292 0.91403 0.92002 0.91082 0.91742 0.89015 0.89488 0.77333 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 9.81 36.00 0.35 -0.75 16 2 C -0.09 -1.27 6.20 -104.43 -0.65 -1.92 16 3 C -0.23 -2.81 10.83 -39.88 -0.43 -3.24 16 4 C 0.01 0.12 12.08 29.63 0.36 0.47 16 5 O -0.15 -2.45 10.40 4.98 0.05 -2.40 16 6 C -0.09 -1.43 7.13 -36.80 -0.26 -1.70 16 7 C 0.60 10.20 7.79 -12.86 -0.10 10.10 16 8 O -0.53 -9.55 14.72 5.19 0.08 -9.47 16 9 N -0.71 -11.73 4.68 -61.63 -0.29 -12.02 16 10 C 0.13 2.05 5.41 -4.05 -0.02 2.03 16 11 C 0.03 0.45 2.19 -65.79 -0.14 0.31 16 12 H 0.11 2.13 5.05 -51.93 -0.26 1.87 16 13 C -0.11 -1.46 6.50 -24.87 -0.16 -1.62 16 14 C -0.12 -1.65 6.93 -25.38 -0.18 -1.83 16 15 C 0.03 0.55 6.01 -2.76 -0.02 0.54 16 16 N -0.49 -8.00 5.23 -224.06 -1.17 -9.17 16 17 C 0.02 0.37 5.32 -4.97 -0.03 0.34 16 18 C 0.40 8.53 6.34 -10.98 -0.07 8.46 16 19 O -0.59 -13.99 11.37 5.55 0.06 -13.93 16 20 N -0.55 -12.92 5.29 -10.96 -0.06 -12.97 16 21 C -0.30 -7.95 9.68 -14.94 -0.14 -8.09 16 22 H 0.10 2.82 7.16 -52.48 -0.38 2.45 16 23 C 0.03 0.71 5.50 -17.47 -0.10 0.61 16 24 N -0.89 -22.85 13.05 55.50 0.72 -22.12 16 25 Si 0.93 20.14 29.55 -169.99 -5.02 15.12 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.16 6.45 -51.93 -0.33 0.83 16 32 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 33 H 0.21 1.96 8.06 -52.49 -0.42 1.54 16 34 H 0.41 7.07 5.24 -40.82 -0.21 6.86 16 35 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 36 H 0.08 1.19 8.11 -51.93 -0.42 0.76 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.34 5.79 -51.93 -0.30 1.04 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 44 H 0.09 1.46 5.30 -51.93 -0.28 1.18 16 45 H 0.39 8.98 7.90 -40.82 -0.32 8.66 16 46 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 371.91 15.07 5.60 5.60 Total: -1.00 -29.42 371.91 -7.89 -37.31 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: -6.29 Total: 20.34 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -1.59 Total: 3.71 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.79 Total: -56.29 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: 0.19 Total: -25.80 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.42 -7.89 -37.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481024430.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.308 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds