Wall clock time and date at job start Tue Mar 31 2020 19:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40371 * 126.64775 * 2 1 4 4 C 1.35131 * 107.11677 * 180.30190 * 3 2 1 5 5 O 1.33923 * 108.76857 * 359.74537 * 4 3 2 6 6 C 1.34926 * 109.38451 * 0.02562 * 5 4 3 7 7 C 1.46657 * 125.98453 * 180.02562 * 6 5 4 8 8 O 1.21698 * 119.99402 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00467 * 0.02562 * 7 6 5 10 10 C 1.46494 * 120.00121 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47286 * 186.88530 * 10 9 7 12 12 H 1.09000 * 110.72921 * 302.77269 * 11 10 9 13 13 C 1.54939 * 110.66899 * 179.67330 * 11 10 9 14 14 C 1.54595 * 102.92097 * 204.15627 * 13 11 10 15 15 C 1.53987 * 105.14307 * 21.95645 * 14 13 11 16 16 N 1.47904 * 107.05753 * 1.22563 * 15 14 13 17 17 C 1.46904 * 111.00406 * 214.15264 * 16 15 14 18 18 C 1.50705 * 109.46556 * 63.67939 * 17 16 15 19 19 O 1.21292 * 120.00277 * 352.97411 * 18 17 16 20 20 N 1.34779 * 119.99608 * 172.97082 * 18 17 16 21 21 C 1.37096 * 119.99936 * 180.02562 * 20 18 17 22 22 H 1.08007 * 119.99892 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00170 * 180.27549 * 21 20 18 24 24 N 1.31412 * 119.99796 * 359.72628 * 23 21 20 25 25 Si 1.86797 * 120.00268 * 179.72206 * 23 21 20 26 26 H 1.48505 * 109.46997 * 60.00349 * 25 23 21 27 27 H 1.48503 * 109.47306 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47267 * 300.00422 * 25 23 21 29 29 H 1.09006 * 109.47027 * 270.12568 * 1 2 3 30 30 H 1.08998 * 109.47419 * 30.13136 * 1 2 3 31 31 H 1.08998 * 109.46921 * 150.12922 * 1 2 3 32 32 H 1.08009 * 126.43817 * 0.04830 * 3 2 1 33 33 H 1.07996 * 125.61416 * 179.78153 * 4 3 2 34 34 H 0.97003 * 119.99720 * 359.97438 * 9 7 6 35 35 H 1.09009 * 109.46900 * 66.88992 * 10 9 7 36 36 H 1.08998 * 109.47241 * 306.88983 * 10 9 7 37 37 H 1.09002 * 110.71955 * 85.79704 * 13 11 10 38 38 H 1.08996 * 110.72497 * 322.51382 * 13 11 10 39 39 H 1.08998 * 110.30640 * 263.04002 * 14 13 11 40 40 H 1.08994 * 110.39088 * 140.92107 * 14 13 11 41 41 H 1.08997 * 109.92145 * 241.87504 * 15 14 13 42 42 H 1.08998 * 110.08369 * 120.66661 * 15 14 13 43 43 H 1.09002 * 109.46831 * 303.68577 * 17 16 15 44 44 H 1.08995 * 109.47480 * 183.67947 * 17 16 15 45 45 H 0.96997 * 120.00075 * 0.02562 * 20 18 17 46 46 H 0.96998 * 119.99895 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6745 -0.0068 5 8 3.6006 -0.6646 -0.0053 6 6 2.3220 -1.0955 0.0019 7 6 1.8843 -2.4953 0.0062 8 8 0.6968 -2.7614 0.0122 9 7 2.7972 -3.4868 0.0035 10 6 2.3600 -4.8850 0.0084 11 6 3.5754 -5.7988 0.1769 12 1 4.3054 -5.6195 -0.6124 13 6 3.1428 -7.2865 0.1940 14 6 4.2931 -7.9721 0.9666 15 6 4.9517 -6.8484 1.7880 16 7 4.1925 -5.6090 1.5146 17 6 5.0774 -4.4364 1.5245 18 6 6.0811 -4.5552 0.4067 19 8 6.1450 -5.5761 -0.2451 20 7 6.9076 -3.5269 0.1311 21 6 7.8204 -3.6347 -0.8861 22 1 7.8773 -4.5438 -1.4665 23 6 8.6764 -2.5767 -1.1665 24 7 8.6075 -1.4708 -0.4600 25 14 9.9253 -2.7265 -2.5475 26 1 9.2176 -2.9651 -3.8311 27 1 10.7122 -1.4706 -2.6416 28 1 10.8392 -3.8630 -2.2674 29 1 -0.3633 0.0023 1.0277 30 1 -0.3634 0.8888 -0.5159 31 1 -0.3633 -0.8911 -0.5118 32 1 2.0306 2.1596 0.0007 33 1 4.5045 1.2917 -0.0120 34 1 3.7437 -3.2746 -0.0017 35 1 1.8618 -5.1131 -0.9340 36 1 1.6669 -5.0461 0.8341 37 1 3.0717 -7.6791 -0.8203 38 1 2.1974 -7.4073 0.7227 39 1 5.0124 -8.4031 0.2702 40 1 3.8993 -8.7435 1.6283 41 1 5.9899 -6.7233 1.4806 42 1 4.9054 -7.0854 2.8509 43 1 5.6011 -4.3846 2.4791 44 1 4.4843 -3.5324 1.3859 45 1 6.8567 -2.7106 0.6526 46 1 9.2053 -0.7324 -0.6555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481024430.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:09 Heat of formation + Delta-G solvation = -62.647817 kcal Electronic energy + Delta-G solvation = -30305.502736 eV Core-core repulsion = 26196.332389 eV Total energy + Delta-G solvation = -4109.170347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.67819 -41.54297 -40.33356 -38.78624 -36.11869 -35.84485 -34.91182 -33.55020 -32.98156 -31.85641 -30.74612 -28.60462 -28.27418 -26.41083 -25.70225 -23.64574 -22.31514 -22.04516 -21.78794 -21.13785 -20.65037 -19.84447 -19.11937 -18.03606 -17.48433 -17.20528 -17.03407 -16.90056 -16.51083 -16.20673 -16.02137 -15.73215 -15.52625 -15.19279 -15.15912 -14.52424 -14.34407 -14.02888 -13.87033 -13.76568 -13.62763 -13.51152 -13.36047 -13.09862 -12.85415 -12.77769 -12.52111 -12.44697 -12.26893 -12.15065 -12.12678 -11.98535 -11.63935 -11.23662 -11.15469 -10.91945 -10.66077 -10.26848 -9.98548 -9.57107 -9.17509 -8.47136 -5.96008 0.01987 1.35498 1.40219 1.40868 1.49397 1.73928 1.94131 2.05835 2.20220 2.27040 2.95517 3.16975 3.18379 3.64054 3.76302 3.78284 3.82979 3.92398 4.05792 4.23116 4.35199 4.37910 4.44892 4.52302 4.53379 4.58049 4.63676 4.71445 4.78441 4.79451 4.81298 4.97202 5.07898 5.12836 5.13914 5.15768 5.23758 5.30866 5.39991 5.41722 5.50366 5.85036 5.87280 5.88927 6.01345 6.31202 6.54623 6.91891 7.09134 7.50448 8.03612 8.68016 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007615 B = 0.005370 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3676.061772 B = 5212.851860 C = 8284.581658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.088 4.088 3 C -0.228 4.228 4 C 0.007 3.993 5 O -0.179 6.179 6 C -0.129 4.129 7 C 0.599 3.401 8 O -0.546 6.546 9 N -0.717 5.717 10 C 0.139 3.861 11 C 0.030 3.970 12 H 0.071 0.929 13 C -0.102 4.102 14 C -0.115 4.115 15 C 0.032 3.968 16 N -0.481 5.481 17 C 0.031 3.969 18 C 0.405 3.595 19 O -0.610 6.610 20 N -0.561 5.561 21 C -0.333 4.333 22 H 0.079 0.921 23 C -0.005 4.005 24 N -0.911 5.911 25 Si 0.986 3.014 26 H -0.275 1.275 27 H -0.270 1.270 28 H -0.274 1.274 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.188 0.812 33 H 0.239 0.761 34 H 0.402 0.598 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.092 0.908 41 H 0.036 0.964 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.395 0.605 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.755 2.305 3.815 12.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.247 4.247 4 C -0.063 4.063 5 O -0.075 6.075 6 C -0.180 4.180 7 C 0.387 3.613 8 O -0.427 6.427 9 N -0.369 5.369 10 C 0.015 3.985 11 C -0.079 4.079 12 H 0.089 0.911 13 C -0.140 4.140 14 C -0.153 4.153 15 C -0.096 4.096 16 N -0.204 5.204 17 C -0.101 4.101 18 C 0.192 3.808 19 O -0.498 6.498 20 N -0.197 5.197 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.206 4.206 24 N -0.551 5.551 25 Si 0.810 3.190 26 H -0.200 1.200 27 H -0.195 1.195 28 H -0.199 1.199 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.206 0.794 33 H 0.255 0.745 34 H 0.240 0.760 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.055 0.945 42 H 0.104 0.896 43 H 0.126 0.874 44 H 0.114 0.886 45 H 0.229 0.771 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.581 1.470 3.797 13.223 hybrid contribution 2.183 0.685 -1.053 2.519 sum -10.398 2.155 2.743 10.968 Atomic orbital electron populations 1.20434 0.87186 1.03736 1.03322 1.21035 0.98507 0.91161 0.98440 1.22082 0.91565 1.00962 1.10072 1.25220 1.01622 0.79765 0.99691 1.84142 1.28077 1.24432 1.70820 1.21884 0.82486 0.94893 1.18745 1.16723 0.85516 0.82548 0.76471 1.90776 1.16158 1.83072 1.52744 1.46366 1.10013 1.06986 1.73553 1.21469 0.96454 0.78104 1.02427 1.23400 0.95334 0.96619 0.92538 0.91127 1.22339 0.99134 0.91381 1.01149 1.22208 0.97068 0.97438 0.98546 1.22887 0.96855 0.89524 1.00323 1.65186 1.26607 1.02190 1.26402 1.22366 0.93473 0.96531 0.97760 1.21694 0.85742 0.84526 0.88879 1.90452 1.73331 1.30871 1.55144 1.42084 1.31402 1.15479 1.30746 1.19575 1.13444 1.01833 1.11375 0.90318 1.25936 0.99727 0.94463 1.00508 1.69653 1.39549 1.05017 1.40862 0.85091 0.77920 0.77855 0.78095 1.20001 1.19471 1.19943 0.90115 0.89012 0.91464 0.79443 0.74503 0.75971 0.90749 0.89821 0.90510 0.89025 0.92896 0.88989 0.94509 0.89551 0.87410 0.88645 0.77137 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.04 9.81 71.23 0.70 -1.34 16 2 C -0.09 -2.38 6.20 -19.74 -0.12 -2.50 16 3 C -0.23 -4.93 10.83 22.07 0.24 -4.69 16 4 C 0.01 0.16 12.08 67.10 0.81 0.97 16 5 O -0.18 -5.71 10.40 -5.09 -0.05 -5.76 16 6 C -0.13 -4.15 7.13 24.07 0.17 -3.98 16 7 C 0.60 20.61 7.79 86.44 0.67 21.28 16 8 O -0.55 -19.92 14.72 -4.34 -0.06 -19.99 16 9 N -0.72 -23.97 4.68 -467.11 -2.19 -26.16 16 10 C 0.14 4.21 5.41 86.38 0.47 4.68 16 11 C 0.03 0.95 2.19 45.26 0.10 1.05 16 12 H 0.07 2.87 5.05 -2.39 -0.01 2.86 16 13 C -0.10 -2.63 6.50 31.80 0.21 -2.42 16 14 C -0.11 -3.06 6.93 31.47 0.22 -2.84 16 15 C 0.03 0.99 6.01 86.44 0.52 1.51 16 16 N -0.48 -15.44 5.23 -862.78 -4.51 -19.95 16 17 C 0.03 1.10 5.32 85.56 0.46 1.55 16 18 C 0.40 17.95 6.34 87.66 0.56 18.50 16 19 O -0.61 -30.19 11.37 -3.07 -0.03 -30.22 16 20 N -0.56 -27.26 5.29 -306.98 -1.62 -28.88 16 21 C -0.33 -17.95 9.68 84.04 0.81 -17.14 16 22 H 0.08 4.54 7.16 -2.91 -0.02 4.52 16 23 C -0.01 -0.27 5.50 84.93 0.47 0.20 16 24 N -0.91 -46.65 13.05 21.66 0.28 -46.37 16 25 Si 0.99 41.49 29.55 68.60 2.03 43.52 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 29 H 0.08 1.67 8.14 -2.38 -0.02 1.66 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.79 6.45 -2.39 -0.02 1.77 16 32 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.24 3.94 8.06 -2.91 -0.02 3.92 16 34 H 0.40 14.39 5.24 -92.71 -0.49 13.91 16 35 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.08 2.46 8.11 -2.39 -0.02 2.44 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.09 1.99 8.05 -2.39 -0.02 1.97 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.04 1.40 5.79 -2.39 -0.01 1.39 16 42 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 44 H 0.10 3.23 5.30 -2.39 -0.01 3.21 16 45 H 0.39 18.56 7.90 -92.71 -0.73 17.83 16 46 H 0.28 13.39 8.31 -92.71 -0.77 12.62 16 Total: -1.00 -65.15 371.91 -0.07 -65.22 By element: Atomic # 1 Polarization: 53.92 SS G_CDS: -0.18 Total: 53.74 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 6.27 Total: 14.85 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -8.04 Total: -121.35 kcal Atomic # 8 Polarization: -55.82 SS G_CDS: -0.15 Total: -55.97 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -65.15 -0.07 -65.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481024430.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.570 kcal (2) G-P(sol) polarization free energy of solvation -65.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds