Wall clock time and date at job start Tue Mar 31 2020 19:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40369 * 126.64413 * 2 1 4 4 C 1.35129 * 107.11446 * 180.30437 * 3 2 1 5 5 O 1.33923 * 108.76852 * 359.74015 * 4 3 2 6 6 C 1.34919 * 109.38489 * 0.02562 * 5 4 3 7 7 C 1.46657 * 125.98695 * 180.02562 * 6 5 4 8 8 O 1.21698 * 119.99529 * 180.02562 * 7 6 5 9 9 N 1.34771 * 120.00051 * 0.02562 * 7 6 5 10 10 C 1.46505 * 119.99980 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.53216 * 35.09914 * 10 9 7 12 12 C 1.53119 * 109.50387 * 275.00411 * 10 9 7 13 13 C 1.53124 * 109.15841 * 182.40624 * 12 10 9 14 14 C 1.53032 * 109.28012 * 57.65244 * 13 12 10 15 15 N 1.46846 * 109.52260 * 300.82015 * 14 13 12 16 16 C 1.46902 * 111.00204 * 185.84105 * 15 14 13 17 17 C 1.50705 * 109.47245 * 66.04321 * 16 15 14 18 18 O 1.21299 * 119.99826 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00066 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99760 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00383 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00047 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00250 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99997 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47036 * 89.99561 * 24 22 20 26 26 H 1.48501 * 109.47320 * 210.00074 * 24 22 20 27 27 H 1.48500 * 109.47127 * 330.00147 * 24 22 20 28 28 C 1.46846 * 111.19997 * 61.74591 * 15 14 13 29 29 H 1.08997 * 109.47279 * 270.12588 * 1 2 3 30 30 H 1.09003 * 109.47559 * 30.13130 * 1 2 3 31 31 H 1.09005 * 109.46939 * 150.13199 * 1 2 3 32 32 H 1.08002 * 126.44263 * 0.04579 * 3 2 1 33 33 H 1.07999 * 125.61721 * 179.78521 * 4 3 2 34 34 H 0.97001 * 120.00123 * 0.02562 * 9 7 6 35 35 H 1.08998 * 109.52394 * 62.49913 * 12 10 9 36 36 H 1.08999 * 109.51878 * 302.30396 * 12 10 9 37 37 H 1.08999 * 109.49853 * 297.70868 * 13 12 10 38 38 H 1.08996 * 109.49839 * 177.59898 * 13 12 10 39 39 H 1.09001 * 109.46314 * 180.80749 * 14 13 12 40 40 H 1.08997 * 109.46418 * 60.83870 * 14 13 12 41 41 H 1.09001 * 109.47344 * 186.04531 * 16 15 14 42 42 H 1.09004 * 109.47104 * 306.04740 * 16 15 14 43 43 H 0.96999 * 120.00634 * 359.97438 * 19 17 16 44 44 H 0.96996 * 120.00184 * 180.02562 * 23 22 20 45 45 H 1.08996 * 109.46231 * 58.27402 * 28 15 14 46 46 H 1.09004 * 109.46418 * 178.24241 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6183 0.6745 -0.0069 5 8 3.6006 -0.6646 -0.0053 6 6 2.3220 -1.0955 0.0020 7 6 1.8844 -2.4952 0.0064 8 8 0.6969 -2.7613 0.0125 9 7 2.7973 -3.4867 0.0037 10 6 2.3601 -4.8849 0.0076 11 1 1.4465 -4.9827 -0.5789 12 6 2.0937 -5.3333 1.4472 13 6 1.6956 -6.8119 1.4475 14 6 2.8095 -7.6353 0.7970 15 7 3.0256 -7.1684 -0.5783 16 6 3.9909 -8.0253 -1.2797 17 6 3.4046 -9.4023 -1.4565 18 8 2.2918 -9.6457 -1.0396 19 7 4.1167 -10.3632 -2.0777 20 6 3.5835 -11.6161 -2.2380 21 1 2.5927 -11.8329 -1.8668 22 6 4.3173 -12.6067 -2.8789 23 7 3.8061 -13.8074 -3.0330 24 14 6.0308 -12.2316 -3.5215 25 1 7.0310 -12.5224 -2.4632 26 1 6.3091 -13.0758 -4.7112 27 1 6.1144 -10.7984 -3.9011 28 6 3.4548 -5.7642 -0.6012 29 1 -0.3634 0.0023 1.0276 30 1 -0.3634 0.8888 -0.5159 31 1 -0.3633 -0.8912 -0.5118 32 1 2.0306 2.1596 0.0007 33 1 4.5046 1.2917 -0.0120 34 1 3.7438 -3.2745 -0.0007 35 1 1.2846 -4.7381 1.8704 36 1 2.9963 -5.1991 2.0434 37 1 0.7716 -6.9400 0.8837 38 1 1.5461 -7.1482 2.4735 39 1 2.5228 -8.6868 0.7827 40 1 3.7297 -7.5176 1.3693 41 1 4.2139 -7.5971 -2.2570 42 1 4.9083 -8.0934 -0.6949 43 1 5.0064 -10.1685 -2.4114 44 1 4.3185 -14.4990 -3.4801 45 1 4.3719 -5.6553 -0.0224 46 1 3.6367 -5.4567 -1.6310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481522561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:26 Heat of formation + Delta-G solvation = -47.216475 kcal Electronic energy + Delta-G solvation = -28480.309516 eV Core-core repulsion = 24371.808322 eV Total energy + Delta-G solvation = -4108.501194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.07776 -40.14737 -38.99110 -37.69020 -35.17128 -34.30324 -33.87069 -32.75206 -31.64328 -31.01903 -29.69592 -27.87492 -27.50179 -24.63845 -23.88422 -22.83726 -22.41466 -21.38064 -20.44868 -19.78351 -19.35837 -18.43326 -18.26252 -16.75581 -16.47005 -16.44039 -16.00653 -15.34755 -14.98120 -14.91859 -14.86232 -14.48964 -14.05429 -13.94678 -13.67501 -13.45474 -13.41519 -13.36484 -13.24063 -13.06264 -12.88079 -12.58467 -12.32336 -12.13381 -11.99378 -11.60389 -11.37358 -11.18497 -10.89168 -10.68390 -10.59130 -10.55281 -10.26570 -10.09354 -9.97200 -9.52523 -9.37885 -8.93114 -8.57434 -8.18171 -7.98801 -6.30732 -3.82083 0.70806 1.95241 2.31873 2.86030 2.89319 3.02293 3.06175 3.14852 3.73408 3.95451 4.10280 4.28787 4.39356 4.52043 4.65783 4.72471 4.85090 5.07591 5.09770 5.14911 5.20303 5.24589 5.27798 5.38197 5.42490 5.49833 5.53578 5.63246 5.66444 5.68842 5.77844 5.80062 5.91087 5.92337 6.00732 6.05397 6.06346 6.20479 6.40779 6.48294 6.51303 7.12178 7.21640 7.28762 7.58676 7.83706 8.14970 8.60463 8.95704 9.42721 9.83562 10.82360 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.002072 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.323781 B =13510.530928 C =14113.511674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.086 4.086 3 C -0.225 4.225 4 C -0.005 4.005 5 O -0.165 6.165 6 C -0.086 4.086 7 C 0.605 3.395 8 O -0.513 6.513 9 N -0.715 5.715 10 C 0.149 3.851 11 H 0.103 0.897 12 C -0.129 4.129 13 C -0.110 4.110 14 C 0.049 3.951 15 N -0.510 5.510 16 C 0.045 3.955 17 C 0.453 3.547 18 O -0.557 6.557 19 N -0.591 5.591 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.051 3.949 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.156 0.844 33 H 0.210 0.790 34 H 0.402 0.598 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.023 0.977 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.035 0.965 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.697 29.974 7.255 31.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 C -0.245 4.245 4 C -0.075 4.075 5 O -0.060 6.060 6 C -0.138 4.138 7 C 0.391 3.609 8 O -0.390 6.390 9 N -0.365 5.365 10 C 0.045 3.955 11 H 0.121 0.879 12 C -0.168 4.168 13 C -0.149 4.149 14 C -0.078 4.078 15 N -0.235 5.235 16 C -0.086 4.086 17 C 0.238 3.762 18 O -0.438 6.438 19 N -0.231 5.231 20 C -0.432 4.432 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.078 4.078 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.173 0.827 33 H 0.227 0.773 34 H 0.237 0.763 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.042 0.958 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.202 0.798 44 H 0.084 0.916 45 H 0.053 0.947 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.895 29.102 7.206 30.041 hybrid contribution 2.838 0.649 -0.235 2.921 sum 4.733 29.751 6.971 30.921 Atomic orbital electron populations 1.20448 0.88098 1.03757 1.02986 1.20682 0.97781 0.90983 0.99479 1.21770 0.92462 1.00221 1.10003 1.24362 0.99994 0.80595 1.02516 1.84053 1.28385 1.22734 1.70847 1.21915 0.81480 0.94867 1.15526 1.16477 0.85818 0.81700 0.76896 1.90877 1.15599 1.82197 1.50311 1.45926 1.09771 1.06271 1.74577 1.21036 0.99113 0.77939 0.97446 0.87854 1.21991 1.01584 0.97416 0.95766 1.21505 0.99803 0.92952 1.00621 1.22345 0.96658 1.02394 0.86449 1.61370 1.45514 0.99724 1.16907 1.21872 0.93332 0.93908 0.99524 1.19605 0.87213 0.85362 0.84006 1.90539 1.19706 1.81473 1.52111 1.42208 1.16463 1.11314 1.53093 1.19425 1.03902 0.84216 1.35674 0.86231 1.25041 0.98376 0.95230 0.97573 1.69619 1.37761 1.02351 1.42401 0.86675 0.84639 0.78471 0.79614 1.19700 1.20196 1.19499 1.22251 0.95257 0.89347 1.00973 0.90730 0.91445 0.89317 0.82653 0.77336 0.76326 0.91341 0.92269 0.90412 0.91249 0.87503 0.95844 0.89153 0.93263 0.79754 0.91631 0.94670 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 9.81 36.01 0.35 -0.49 16 2 C -0.09 -0.83 6.20 -104.43 -0.65 -1.47 16 3 C -0.23 -1.57 10.83 -39.89 -0.43 -2.00 16 4 C 0.00 -0.03 12.08 29.63 0.36 0.33 16 5 O -0.16 -1.41 10.40 5.00 0.05 -1.36 16 6 C -0.09 -0.90 7.13 -36.80 -0.26 -1.16 16 7 C 0.60 7.21 7.75 -12.87 -0.10 7.11 16 8 O -0.51 -7.52 14.41 5.19 0.07 -7.44 16 9 N -0.72 -7.27 5.08 -55.04 -0.28 -7.55 16 10 C 0.15 1.76 2.61 -67.85 -0.18 1.58 16 11 H 0.10 1.48 7.58 -51.93 -0.39 1.09 16 12 C -0.13 -1.51 5.58 -26.61 -0.15 -1.66 16 13 C -0.11 -1.47 6.09 -26.65 -0.16 -1.63 16 14 C 0.05 0.75 5.11 -3.84 -0.02 0.73 16 15 N -0.51 -7.97 4.39 -236.11 -1.04 -9.00 16 16 C 0.05 0.74 5.45 -4.97 -0.03 0.71 16 17 C 0.45 10.09 7.46 -10.99 -0.08 10.01 16 18 O -0.56 -14.57 13.92 5.54 0.08 -14.50 16 19 N -0.59 -13.89 5.09 -10.96 -0.06 -13.95 16 20 C -0.30 -8.51 10.16 -14.93 -0.15 -8.66 16 21 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.67 13.96 55.50 0.77 -24.90 16 24 Si 0.88 19.23 27.74 -169.99 -4.71 14.51 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 28 C 0.05 0.60 4.93 -3.83 -0.02 0.58 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.94 6.45 -51.93 -0.34 0.61 16 32 H 0.16 0.71 8.06 -52.49 -0.42 0.28 16 33 H 0.21 0.35 8.06 -52.49 -0.42 -0.07 16 34 H 0.40 3.20 8.36 -40.82 -0.34 2.86 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.11 2.04 5.80 -51.93 -0.30 1.73 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 1.29 7.98 -51.93 -0.41 0.88 16 42 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 43 H 0.37 7.62 5.76 -40.82 -0.24 7.38 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -34.13 377.42 -7.68 -41.81 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -6.64 Total: 11.71 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.61 Total: 4.98 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.60 Total: -55.40 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.20 Total: -23.30 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.13 -7.68 -41.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481522561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.409 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds