Wall clock time and date at job start Tue Mar 31 2020 19:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40369 * 126.64413 * 2 1 4 4 C 1.35129 * 107.11446 * 180.30437 * 3 2 1 5 5 O 1.33923 * 108.76852 * 359.74015 * 4 3 2 6 6 C 1.34919 * 109.38489 * 0.02562 * 5 4 3 7 7 C 1.46657 * 125.98695 * 180.02562 * 6 5 4 8 8 O 1.21698 * 119.99529 * 180.02562 * 7 6 5 9 9 N 1.34771 * 120.00051 * 0.02562 * 7 6 5 10 10 C 1.46505 * 119.99980 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.53216 * 35.09914 * 10 9 7 12 12 C 1.53119 * 109.50387 * 275.00411 * 10 9 7 13 13 C 1.53124 * 109.15841 * 182.40624 * 12 10 9 14 14 C 1.53032 * 109.28012 * 57.65244 * 13 12 10 15 15 N 1.46846 * 109.52260 * 300.82015 * 14 13 12 16 16 C 1.46902 * 111.00204 * 185.84105 * 15 14 13 17 17 C 1.50705 * 109.47245 * 66.04321 * 16 15 14 18 18 O 1.21299 * 119.99826 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00066 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99760 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00383 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00047 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00250 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99997 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47036 * 89.99561 * 24 22 20 26 26 H 1.48501 * 109.47320 * 210.00074 * 24 22 20 27 27 H 1.48500 * 109.47127 * 330.00147 * 24 22 20 28 28 C 1.46846 * 111.19997 * 61.74591 * 15 14 13 29 29 H 1.08997 * 109.47279 * 270.12588 * 1 2 3 30 30 H 1.09003 * 109.47559 * 30.13130 * 1 2 3 31 31 H 1.09005 * 109.46939 * 150.13199 * 1 2 3 32 32 H 1.08002 * 126.44263 * 0.04579 * 3 2 1 33 33 H 1.07999 * 125.61721 * 179.78521 * 4 3 2 34 34 H 0.97001 * 120.00123 * 0.02562 * 9 7 6 35 35 H 1.08998 * 109.52394 * 62.49913 * 12 10 9 36 36 H 1.08999 * 109.51878 * 302.30396 * 12 10 9 37 37 H 1.08999 * 109.49853 * 297.70868 * 13 12 10 38 38 H 1.08996 * 109.49839 * 177.59898 * 13 12 10 39 39 H 1.09001 * 109.46314 * 180.80749 * 14 13 12 40 40 H 1.08997 * 109.46418 * 60.83870 * 14 13 12 41 41 H 1.09001 * 109.47344 * 186.04531 * 16 15 14 42 42 H 1.09004 * 109.47104 * 306.04740 * 16 15 14 43 43 H 0.96999 * 120.00634 * 359.97438 * 19 17 16 44 44 H 0.96996 * 120.00184 * 180.02562 * 23 22 20 45 45 H 1.08996 * 109.46231 * 58.27402 * 28 15 14 46 46 H 1.09004 * 109.46418 * 178.24241 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6183 0.6745 -0.0069 5 8 3.6006 -0.6646 -0.0053 6 6 2.3220 -1.0955 0.0020 7 6 1.8844 -2.4952 0.0064 8 8 0.6969 -2.7613 0.0125 9 7 2.7973 -3.4867 0.0037 10 6 2.3601 -4.8849 0.0076 11 1 1.4465 -4.9827 -0.5789 12 6 2.0937 -5.3333 1.4472 13 6 1.6956 -6.8119 1.4475 14 6 2.8095 -7.6353 0.7970 15 7 3.0256 -7.1684 -0.5783 16 6 3.9909 -8.0253 -1.2797 17 6 3.4046 -9.4023 -1.4565 18 8 2.2918 -9.6457 -1.0396 19 7 4.1167 -10.3632 -2.0777 20 6 3.5835 -11.6161 -2.2380 21 1 2.5927 -11.8329 -1.8668 22 6 4.3173 -12.6067 -2.8789 23 7 3.8061 -13.8074 -3.0330 24 14 6.0308 -12.2316 -3.5215 25 1 7.0310 -12.5224 -2.4632 26 1 6.3091 -13.0758 -4.7112 27 1 6.1144 -10.7984 -3.9011 28 6 3.4548 -5.7642 -0.6012 29 1 -0.3634 0.0023 1.0276 30 1 -0.3634 0.8888 -0.5159 31 1 -0.3633 -0.8912 -0.5118 32 1 2.0306 2.1596 0.0007 33 1 4.5046 1.2917 -0.0120 34 1 3.7438 -3.2745 -0.0007 35 1 1.2846 -4.7381 1.8704 36 1 2.9963 -5.1991 2.0434 37 1 0.7716 -6.9400 0.8837 38 1 1.5461 -7.1482 2.4735 39 1 2.5228 -8.6868 0.7827 40 1 3.7297 -7.5176 1.3693 41 1 4.2139 -7.5971 -2.2570 42 1 4.9083 -8.0934 -0.6949 43 1 5.0064 -10.1685 -2.4114 44 1 4.3185 -14.4990 -3.4801 45 1 4.3719 -5.6553 -0.0224 46 1 3.6367 -5.4567 -1.6310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481522561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:25 Heat of formation + Delta-G solvation = -74.421070 kcal Electronic energy + Delta-G solvation = -28481.489196 eV Core-core repulsion = 24371.808322 eV Total energy + Delta-G solvation = -4109.680874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.66532 -41.17004 -40.39605 -39.08384 -36.27970 -35.76844 -34.95710 -33.94649 -33.62537 -31.73906 -30.55862 -29.14390 -28.40505 -26.38729 -24.78243 -24.02076 -23.24746 -22.11924 -21.33491 -21.23860 -20.66986 -20.17491 -19.15034 -17.72672 -17.50097 -17.39366 -17.04715 -16.72466 -16.36931 -16.30805 -15.77572 -15.58189 -15.25900 -15.19151 -14.86248 -14.78877 -14.51221 -14.38154 -14.12198 -14.04006 -13.88430 -13.78681 -13.54339 -13.46934 -13.05052 -12.79430 -12.70334 -12.40883 -12.37764 -11.98401 -11.95948 -11.82332 -11.61576 -11.43149 -11.21368 -10.66898 -10.34751 -10.26341 -10.20577 -9.56545 -9.21271 -8.39333 -5.99969 0.02809 1.31208 1.36788 1.41995 1.45750 1.62726 1.98657 2.06808 2.09827 2.24655 2.72559 3.16882 3.22923 3.62498 3.77430 3.81653 3.83815 3.95974 4.02956 4.08354 4.27698 4.30060 4.39616 4.48284 4.54247 4.58028 4.59529 4.63430 4.69815 4.74709 4.78240 4.87788 4.98334 5.01562 5.11330 5.17521 5.24362 5.28433 5.38507 5.47013 5.55441 5.86503 5.90904 6.03435 6.18724 6.43509 6.62111 6.91104 7.02004 7.42471 8.00515 8.78393 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.002072 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.323781 B =13510.530928 C =14113.511674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.097 4.097 3 C -0.238 4.238 4 C 0.016 3.984 5 O -0.168 6.168 6 C -0.117 4.117 7 C 0.601 3.399 8 O -0.553 6.553 9 N -0.701 5.701 10 C 0.155 3.845 11 H 0.071 0.929 12 C -0.118 4.118 13 C -0.106 4.106 14 C 0.053 3.947 15 N -0.538 5.538 16 C 0.057 3.943 17 C 0.450 3.550 18 O -0.605 6.605 19 N -0.592 5.592 20 C -0.325 4.325 21 H 0.054 0.946 22 C -0.018 4.018 23 N -0.936 5.936 24 Si 0.966 3.034 25 H -0.257 1.257 26 H -0.277 1.277 27 H -0.230 1.230 28 C 0.057 3.943 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.180 0.820 33 H 0.256 0.744 34 H 0.417 0.583 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.122 0.878 42 H 0.085 0.915 43 H 0.390 0.610 44 H 0.278 0.722 45 H 0.066 0.934 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.173 34.073 7.057 35.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 C -0.257 4.257 4 C -0.053 4.053 5 O -0.064 6.064 6 C -0.169 4.169 7 C 0.389 3.611 8 O -0.433 6.433 9 N -0.352 5.352 10 C 0.050 3.950 11 H 0.089 0.911 12 C -0.157 4.157 13 C -0.144 4.144 14 C -0.074 4.074 15 N -0.264 5.264 16 C -0.073 4.073 17 C 0.238 3.762 18 O -0.489 6.489 19 N -0.234 5.234 20 C -0.454 4.454 21 H 0.072 0.928 22 C -0.217 4.217 23 N -0.577 5.577 24 Si 0.786 3.214 25 H -0.181 1.181 26 H -0.202 1.202 27 H -0.153 1.153 28 C -0.071 4.071 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.198 0.802 33 H 0.272 0.728 34 H 0.254 0.746 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.140 0.860 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.401 33.241 7.017 34.572 hybrid contribution 1.301 -0.540 -0.104 1.412 sum 7.702 32.702 6.913 34.300 Atomic orbital electron populations 1.20424 0.88327 1.03486 1.02992 1.21022 0.98138 0.92048 0.98769 1.22096 0.92439 1.00664 1.10468 1.25334 1.01314 0.79668 0.98965 1.84044 1.27239 1.24146 1.70983 1.21584 0.82589 0.94142 1.18546 1.16731 0.85460 0.82673 0.76201 1.90857 1.17226 1.83003 1.52219 1.45706 1.10313 1.05172 1.73985 1.20803 0.98221 0.79036 0.96971 0.91122 1.21882 1.02148 0.95590 0.96062 1.21439 0.98084 0.94213 1.00702 1.22182 0.98024 1.00008 0.87210 1.61241 1.46566 1.01625 1.16940 1.21801 0.93836 0.89711 1.01993 1.20913 0.86425 0.87371 0.81481 1.90535 1.22187 1.82832 1.53299 1.42023 1.17429 1.09956 1.54039 1.18980 1.02193 0.87120 1.37148 0.92796 1.26142 1.04176 0.94280 0.97054 1.69811 1.40453 1.03946 1.43508 0.85349 0.76790 0.80477 0.78798 1.18111 1.20237 1.15281 1.22252 0.95880 0.86502 1.02416 0.90608 0.89395 0.91820 0.80237 0.72787 0.74640 0.92272 0.90061 0.93202 0.89983 0.92037 0.93505 0.86010 0.89743 0.77492 0.91233 0.91596 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 9.81 71.24 0.70 -0.98 16 2 C -0.10 -1.74 6.20 -19.74 -0.12 -1.86 16 3 C -0.24 -2.59 10.83 22.07 0.24 -2.35 16 4 C 0.02 0.13 12.08 67.10 0.81 0.94 16 5 O -0.17 -2.41 10.40 -5.03 -0.05 -2.47 16 6 C -0.12 -2.32 7.13 24.07 0.17 -2.14 16 7 C 0.60 14.27 7.75 86.44 0.67 14.94 16 8 O -0.55 -17.02 14.41 -4.34 -0.06 -17.08 16 9 N -0.70 -13.20 5.08 -446.26 -2.27 -15.47 16 10 C 0.15 3.51 2.61 45.04 0.12 3.62 16 11 H 0.07 2.10 7.58 -2.39 -0.02 2.08 16 12 C -0.12 -2.66 5.58 30.68 0.17 -2.49 16 13 C -0.11 -2.87 6.09 30.65 0.19 -2.68 16 14 C 0.05 1.62 5.11 86.32 0.44 2.06 16 15 N -0.54 -15.98 4.39 -900.92 -3.96 -19.94 16 16 C 0.06 1.71 5.45 85.56 0.47 2.17 16 17 C 0.45 20.17 7.46 87.66 0.65 20.83 16 18 O -0.60 -33.45 13.92 -3.09 -0.04 -33.49 16 19 N -0.59 -27.71 5.09 -306.98 -1.56 -29.27 16 20 C -0.33 -19.07 10.16 84.04 0.85 -18.22 16 21 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 22 C -0.02 -1.02 5.50 84.93 0.47 -0.55 16 23 N -0.94 -56.81 13.96 21.66 0.30 -56.51 16 24 Si 0.97 38.58 27.74 68.60 1.90 40.48 16 25 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 26 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16 27 H -0.23 -7.63 6.52 99.48 0.65 -6.98 16 28 C 0.06 1.18 4.93 86.33 0.43 1.60 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.44 6.45 -2.38 -0.02 1.43 16 32 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 33 H 0.26 -0.61 8.06 -2.91 -0.02 -0.64 16 34 H 0.42 5.42 8.36 -92.71 -0.77 4.65 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.06 2.45 5.80 -2.39 -0.01 2.44 16 40 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.12 2.92 7.98 -2.39 -0.02 2.90 16 42 H 0.08 1.99 8.12 -2.39 -0.02 1.97 16 43 H 0.39 14.92 5.76 -92.71 -0.53 14.38 16 44 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 45 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.09 1.70 8.01 -2.38 -0.02 1.68 16 Total: -1.00 -84.12 377.42 0.17 -83.95 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: -0.35 Total: 34.89 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 6.25 Total: 14.90 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -7.48 Total: -121.18 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -0.16 Total: -53.04 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 1.90 Total: 40.48 kcal Total: -84.12 0.17 -83.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481522561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.530 kcal (2) G-P(sol) polarization free energy of solvation -84.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds