Wall clock time and date at job start Tue Mar 31 2020 19:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41379 * 126.57471 * 2 1 4 4 C 1.34520 * 106.83573 * 179.97438 * 3 2 1 5 5 O 1.34302 * 108.42236 * 359.73194 * 4 3 2 6 6 C 1.34307 * 109.47422 * 0.43726 * 5 4 3 7 7 C 1.50704 * 125.78725 * 179.82356 * 6 5 4 8 8 C 1.50701 * 109.46887 * 269.69497 * 7 6 5 9 9 O 1.21280 * 120.00319 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99480 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99703 * 179.97438 * 10 8 7 12 12 H 1.09004 * 110.35379 * 327.13945 * 11 10 8 13 13 C 1.54592 * 110.31088 * 89.28423 * 11 10 8 14 14 C 1.54935 * 102.92439 * 140.86784 * 13 11 10 15 15 N 1.48532 * 103.23120 * 322.59281 * 14 13 11 16 16 C 1.46899 * 111.00521 * 159.71906 * 15 14 13 17 17 C 1.50698 * 109.46987 * 52.59789 * 16 15 14 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99773 * 179.72591 * 19 17 16 21 21 H 1.08002 * 119.99671 * 0.27660 * 20 19 17 22 22 C 1.38950 * 120.00030 * 180.27703 * 20 19 17 23 23 N 1.31414 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99969 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47234 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47403 * 120.00325 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00122 * 24 22 20 28 28 C 1.47902 * 105.82040 * 39.19825 * 15 14 13 29 29 H 1.09002 * 109.47633 * 270.04378 * 1 2 3 30 30 H 1.08994 * 109.47789 * 30.04781 * 1 2 3 31 31 H 1.09001 * 109.46981 * 150.04813 * 1 2 3 32 32 H 1.07998 * 126.58506 * 359.97438 * 3 2 1 33 33 H 1.08001 * 125.78303 * 180.02562 * 4 3 2 34 34 H 1.08994 * 109.46547 * 149.69321 * 7 6 5 35 35 H 1.08997 * 109.46621 * 29.69428 * 7 6 5 36 36 H 0.97000 * 120.00140 * 359.97438 * 10 8 7 37 37 H 1.08994 * 110.72545 * 259.23123 * 13 11 10 38 38 H 1.09004 * 110.72552 * 22.51466 * 13 11 10 39 39 H 1.08996 * 110.67300 * 204.15252 * 14 13 11 40 40 H 1.09006 * 110.66239 * 81.02129 * 14 13 11 41 41 H 1.09003 * 109.46477 * 292.60279 * 16 15 14 42 42 H 1.08993 * 109.47002 * 172.60605 * 16 15 14 43 43 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 44 44 H 0.96999 * 119.99863 * 180.02562 * 23 22 20 45 45 H 1.09004 * 109.91425 * 94.02645 * 28 15 14 46 46 H 1.08999 * 109.91911 * 215.12227 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6156 0.6811 0.0006 5 8 3.5848 -0.6616 0.0069 6 6 2.3086 -1.0802 0.0007 7 6 1.8522 -2.5164 0.0010 8 6 1.7006 -2.9956 -1.4198 9 8 1.9401 -2.2449 -2.3417 10 7 1.2989 -4.2584 -1.6657 11 6 1.1510 -4.7240 -3.0468 12 1 0.8297 -3.9052 -3.6906 13 6 2.4835 -5.3178 -3.5585 14 6 2.0213 -6.5411 -4.3894 15 7 0.8755 -7.0706 -3.6065 16 6 0.0118 -7.9150 -4.4426 17 6 0.8464 -8.9702 -5.1215 18 8 2.0429 -9.0147 -4.9276 19 7 0.2631 -9.8650 -5.9434 20 6 1.0232 -10.8215 -6.5655 21 1 2.0887 -10.8607 -6.3935 22 6 0.4227 -11.7405 -7.4174 23 7 -0.8737 -11.6925 -7.6270 24 14 1.4582 -13.0442 -8.2644 25 1 2.8794 -12.8849 -7.8639 26 1 0.9802 -14.3923 -7.8657 27 1 1.3384 -12.8920 -9.7368 28 6 0.1412 -5.8848 -3.1143 29 1 -0.3634 0.0008 1.0277 30 1 -0.3634 0.8895 -0.5145 31 1 -0.3633 -0.8904 -0.5131 32 1 2.0366 2.1691 -0.0004 33 1 4.5059 1.2924 0.0011 34 1 0.8939 -2.5929 0.5145 35 1 2.5902 -3.1320 0.5153 36 1 1.1078 -4.8589 -0.9283 37 1 3.0090 -4.6000 -4.1883 38 1 3.1109 -5.6328 -2.7247 39 1 2.8168 -7.2832 -4.4569 40 1 1.6977 -6.2311 -5.3831 41 1 -0.4786 -7.2990 -5.1963 42 1 -0.7421 -8.3941 -3.8181 43 1 -0.6938 -9.8297 -6.0982 44 1 -1.2929 -12.3343 -8.2214 45 1 -0.6658 -5.6353 -3.8033 46 1 -0.2656 -6.0850 -2.1231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481692782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:37 Heat of formation + Delta-G solvation = -46.509876 kcal Electronic energy + Delta-G solvation = -28003.198617 eV Core-core repulsion = 23894.728064 eV Total energy + Delta-G solvation = -4108.470554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.83279 -40.15813 -38.93142 -37.45683 -34.57752 -34.47362 -33.82561 -32.50024 -31.41153 -30.79544 -29.23648 -28.31115 -26.76306 -25.97027 -24.18362 -21.92080 -21.43352 -21.14636 -20.61110 -19.81097 -19.26994 -17.91665 -17.58883 -17.31188 -16.43334 -16.00406 -15.91873 -15.66252 -15.35227 -14.90192 -14.52857 -14.41015 -14.04187 -13.86632 -13.75248 -13.65194 -13.38900 -13.12875 -12.98824 -12.82252 -12.54152 -12.38294 -12.25678 -11.97978 -11.73041 -11.61023 -11.56689 -11.43508 -11.10371 -10.97935 -10.62938 -10.34876 -10.25442 -10.11037 -9.82605 -9.53480 -9.23226 -8.58771 -8.40165 -8.05620 -7.94251 -6.44942 -3.85822 1.45441 2.31794 2.39967 2.68411 3.10600 3.14348 3.25417 3.32447 3.85726 4.04331 4.24106 4.26688 4.48233 4.59994 4.64066 4.68810 4.81004 4.87307 4.95170 5.04281 5.16720 5.20571 5.23870 5.34179 5.44148 5.47531 5.51316 5.57750 5.68590 5.71823 5.76260 5.80820 5.91643 5.95190 6.05037 6.21304 6.25506 6.31452 6.41270 6.65977 6.91425 7.15814 7.20034 7.31358 7.52740 8.01125 8.02932 8.57933 9.14810 9.50224 10.01602 10.72721 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.040130 B = 0.001734 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.566337 B =16141.713950 C =16523.529621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.165 4.165 3 C -0.212 4.212 4 C -0.036 4.036 5 O -0.171 6.171 6 C 0.003 3.997 7 C -0.061 4.061 8 C 0.513 3.487 9 O -0.528 6.528 10 N -0.718 5.718 11 C 0.136 3.864 12 H 0.094 0.906 13 C -0.135 4.135 14 C 0.038 3.962 15 N -0.494 5.494 16 C 0.036 3.964 17 C 0.441 3.559 18 O -0.581 6.581 19 N -0.561 5.561 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.027 3.973 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.147 0.853 33 H 0.202 0.798 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.403 0.597 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.038 0.962 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.053 0.947 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.070 21.676 16.928 27.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.167 4.167 3 C -0.231 4.231 4 C -0.103 4.103 5 O -0.067 6.067 6 C -0.047 4.047 7 C -0.101 4.101 8 C 0.298 3.702 9 O -0.404 6.404 10 N -0.370 5.370 11 C 0.031 3.969 12 H 0.112 0.888 13 C -0.174 4.174 14 C -0.089 4.089 15 N -0.218 5.218 16 C -0.096 4.096 17 C 0.227 3.773 18 O -0.465 6.465 19 N -0.197 5.197 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.102 4.102 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.164 0.836 33 H 0.219 0.781 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.238 0.762 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.139 0.861 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.109 0.891 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.330 21.524 16.679 27.263 hybrid contribution -0.751 -0.242 -0.956 1.239 sum 0.579 21.282 15.723 26.467 Atomic orbital electron populations 1.20175 0.89318 1.02766 1.01741 1.20154 0.97023 0.92038 1.07454 1.21677 0.92634 0.99732 1.09027 1.23954 0.99752 0.80519 1.06106 1.83988 1.28587 1.22850 1.71264 1.21217 0.81259 0.94915 1.07343 1.20081 1.04212 0.89886 0.95938 1.20380 0.77006 0.81906 0.90864 1.90752 1.48794 1.54813 1.46005 1.46075 1.69189 1.12835 1.08929 1.21871 0.96172 0.96303 0.82564 0.88814 1.22997 0.96560 0.97368 1.00513 1.23492 0.95786 0.95853 0.93761 1.64640 1.07438 1.14711 1.35058 1.22113 0.95814 0.95771 0.95916 1.19687 0.88638 0.85047 0.83916 1.90441 1.15167 1.74760 1.66168 1.41860 1.10610 1.27345 1.39929 1.19759 0.93910 1.07019 1.22180 0.87794 1.25275 0.96021 0.98934 0.97715 1.69620 1.09277 1.37562 1.37732 0.85794 0.79914 0.79911 0.78688 1.19199 1.20727 1.20764 1.23189 0.95517 0.89819 1.01655 0.91484 0.91440 0.91845 0.83559 0.78128 0.85997 0.86914 0.76168 0.90934 0.90466 0.86098 0.94345 0.93200 0.89138 0.77442 0.91886 0.92829 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 9.99 36.01 0.36 -0.27 16 2 C -0.17 -1.66 6.16 -104.75 -0.65 -2.30 16 3 C -0.21 -1.95 10.87 -39.70 -0.43 -2.38 16 4 C -0.04 -0.32 12.09 29.42 0.36 0.04 16 5 O -0.17 -1.95 10.65 5.70 0.06 -1.89 16 6 C 0.00 0.03 5.81 -35.62 -0.21 -0.17 16 7 C -0.06 -0.47 5.85 -29.03 -0.17 -0.64 16 8 C 0.51 5.56 7.82 -10.98 -0.09 5.47 16 9 O -0.53 -8.15 15.69 5.56 0.09 -8.06 16 10 N -0.72 -6.72 5.06 -52.49 -0.27 -6.99 16 11 C 0.14 1.60 3.34 -66.57 -0.22 1.38 16 12 H 0.09 1.21 7.56 -51.93 -0.39 0.82 16 13 C -0.14 -1.85 6.78 -24.87 -0.17 -2.02 16 14 C 0.04 0.64 5.30 -1.90 -0.01 0.63 16 15 N -0.49 -7.89 5.26 -231.89 -1.22 -9.11 16 16 C 0.04 0.62 5.52 -4.98 -0.03 0.59 16 17 C 0.44 10.16 7.49 -10.99 -0.08 10.08 16 18 O -0.58 -15.08 13.10 5.55 0.07 -15.01 16 19 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 20 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 24 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 C 0.03 0.32 6.46 -2.75 -0.02 0.30 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.48 7.78 -51.93 -0.40 0.08 16 32 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.12 0.56 7.76 -51.93 -0.40 0.16 16 35 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.40 2.67 8.36 -40.82 -0.34 2.33 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.05 8.06 -51.93 -0.42 0.64 16 39 H 0.12 2.43 5.97 -51.93 -0.31 2.12 16 40 H 0.04 0.66 8.02 -51.93 -0.42 0.24 16 41 H 0.05 0.80 7.81 -51.93 -0.41 0.39 16 42 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.05 0.61 7.57 -51.93 -0.39 0.21 16 46 H 0.08 0.82 7.66 -51.93 -0.40 0.43 16 LS Contribution 384.37 15.07 5.79 5.79 Total: -1.00 -34.69 384.37 -8.10 -42.79 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -6.67 Total: 11.37 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -1.59 Total: 2.83 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.82 Total: -53.67 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: 0.22 Total: -24.95 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.69 -8.10 -42.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481692782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.722 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds