Wall clock time and date at job start Tue Mar 31 2020 19:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41379 * 126.57471 * 2 1 4 4 C 1.34520 * 106.83573 * 179.97438 * 3 2 1 5 5 O 1.34302 * 108.42236 * 359.73194 * 4 3 2 6 6 C 1.34307 * 109.47422 * 0.43726 * 5 4 3 7 7 C 1.50704 * 125.78725 * 179.82356 * 6 5 4 8 8 C 1.50701 * 109.46887 * 269.69497 * 7 6 5 9 9 O 1.21280 * 120.00319 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99480 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99703 * 179.97438 * 10 8 7 12 12 H 1.09004 * 110.35379 * 327.13945 * 11 10 8 13 13 C 1.54592 * 110.31088 * 89.28423 * 11 10 8 14 14 C 1.54935 * 102.92439 * 140.86784 * 13 11 10 15 15 N 1.48532 * 103.23120 * 322.59281 * 14 13 11 16 16 C 1.46899 * 111.00521 * 159.71906 * 15 14 13 17 17 C 1.50698 * 109.46987 * 52.59789 * 16 15 14 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99773 * 179.72591 * 19 17 16 21 21 H 1.08002 * 119.99671 * 0.27660 * 20 19 17 22 22 C 1.38950 * 120.00030 * 180.27703 * 20 19 17 23 23 N 1.31414 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99969 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47234 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47403 * 120.00325 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00122 * 24 22 20 28 28 C 1.47902 * 105.82040 * 39.19825 * 15 14 13 29 29 H 1.09002 * 109.47633 * 270.04378 * 1 2 3 30 30 H 1.08994 * 109.47789 * 30.04781 * 1 2 3 31 31 H 1.09001 * 109.46981 * 150.04813 * 1 2 3 32 32 H 1.07998 * 126.58506 * 359.97438 * 3 2 1 33 33 H 1.08001 * 125.78303 * 180.02562 * 4 3 2 34 34 H 1.08994 * 109.46547 * 149.69321 * 7 6 5 35 35 H 1.08997 * 109.46621 * 29.69428 * 7 6 5 36 36 H 0.97000 * 120.00140 * 359.97438 * 10 8 7 37 37 H 1.08994 * 110.72545 * 259.23123 * 13 11 10 38 38 H 1.09004 * 110.72552 * 22.51466 * 13 11 10 39 39 H 1.08996 * 110.67300 * 204.15252 * 14 13 11 40 40 H 1.09006 * 110.66239 * 81.02129 * 14 13 11 41 41 H 1.09003 * 109.46477 * 292.60279 * 16 15 14 42 42 H 1.08993 * 109.47002 * 172.60605 * 16 15 14 43 43 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 44 44 H 0.96999 * 119.99863 * 180.02562 * 23 22 20 45 45 H 1.09004 * 109.91425 * 94.02645 * 28 15 14 46 46 H 1.08999 * 109.91911 * 215.12227 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6156 0.6811 0.0006 5 8 3.5848 -0.6616 0.0069 6 6 2.3086 -1.0802 0.0007 7 6 1.8522 -2.5164 0.0010 8 6 1.7006 -2.9956 -1.4198 9 8 1.9401 -2.2449 -2.3417 10 7 1.2989 -4.2584 -1.6657 11 6 1.1510 -4.7240 -3.0468 12 1 0.8297 -3.9052 -3.6906 13 6 2.4835 -5.3178 -3.5585 14 6 2.0213 -6.5411 -4.3894 15 7 0.8755 -7.0706 -3.6065 16 6 0.0118 -7.9150 -4.4426 17 6 0.8464 -8.9702 -5.1215 18 8 2.0429 -9.0147 -4.9276 19 7 0.2631 -9.8650 -5.9434 20 6 1.0232 -10.8215 -6.5655 21 1 2.0887 -10.8607 -6.3935 22 6 0.4227 -11.7405 -7.4174 23 7 -0.8737 -11.6925 -7.6270 24 14 1.4582 -13.0442 -8.2644 25 1 2.8794 -12.8849 -7.8639 26 1 0.9802 -14.3923 -7.8657 27 1 1.3384 -12.8920 -9.7368 28 6 0.1412 -5.8848 -3.1143 29 1 -0.3634 0.0008 1.0277 30 1 -0.3634 0.8895 -0.5145 31 1 -0.3633 -0.8904 -0.5131 32 1 2.0366 2.1691 -0.0004 33 1 4.5059 1.2924 0.0011 34 1 0.8939 -2.5929 0.5145 35 1 2.5902 -3.1320 0.5153 36 1 1.1078 -4.8589 -0.9283 37 1 3.0090 -4.6000 -4.1883 38 1 3.1109 -5.6328 -2.7247 39 1 2.8168 -7.2832 -4.4569 40 1 1.6977 -6.2311 -5.3831 41 1 -0.4786 -7.2990 -5.1963 42 1 -0.7421 -8.3941 -3.8181 43 1 -0.6938 -9.8297 -6.0982 44 1 -1.2929 -12.3343 -8.2214 45 1 -0.6658 -5.6353 -3.8033 46 1 -0.2656 -6.0850 -2.1231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481692782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:36 Heat of formation + Delta-G solvation = -73.133582 kcal Electronic energy + Delta-G solvation = -28004.353108 eV Core-core repulsion = 23894.728064 eV Total energy + Delta-G solvation = -4109.625044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.51324 -41.19180 -40.35503 -38.91872 -36.06403 -35.31637 -35.19598 -33.38823 -33.17881 -32.02327 -29.99976 -29.32548 -28.10997 -26.88263 -25.89046 -22.74895 -22.47986 -22.14592 -21.56611 -21.05445 -20.50172 -19.86882 -18.45779 -18.03690 -17.68671 -17.28520 -16.92600 -16.65439 -16.47857 -16.33127 -16.05563 -15.60319 -15.55089 -15.06935 -14.77722 -14.51955 -14.40761 -14.05940 -13.92485 -13.69237 -13.59404 -13.43963 -13.31297 -13.23775 -13.02892 -12.97099 -12.69441 -12.62739 -12.40441 -12.32160 -12.26219 -12.12573 -11.83796 -11.47474 -11.03250 -10.49549 -10.33113 -10.03746 -9.95223 -9.35845 -9.26149 -8.47141 -5.95404 0.76120 1.36085 1.41792 1.55566 1.58965 1.64617 2.03589 2.04563 2.27881 2.36074 2.85324 3.19976 3.30183 3.55338 3.63405 3.79191 3.95924 4.00623 4.08504 4.12032 4.27827 4.29750 4.31586 4.41459 4.46702 4.48998 4.56686 4.64629 4.71525 4.79383 4.82642 4.88832 4.90758 5.00013 5.07943 5.16095 5.24511 5.34339 5.41655 5.49800 5.69697 5.82575 5.91850 6.08953 6.23549 6.55081 6.60485 7.13076 7.24053 7.55731 8.11679 8.70430 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.040130 B = 0.001734 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.566337 B =16141.713950 C =16523.529621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.181 4.181 3 C -0.229 4.229 4 C -0.043 4.043 5 O -0.194 6.194 6 C -0.023 4.023 7 C -0.055 4.055 8 C 0.514 3.486 9 O -0.579 6.579 10 N -0.703 5.703 11 C 0.145 3.855 12 H 0.085 0.915 13 C -0.126 4.126 14 C 0.041 3.959 15 N -0.505 5.505 16 C 0.047 3.953 17 C 0.438 3.562 18 O -0.614 6.614 19 N -0.573 5.573 20 C -0.331 4.331 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.033 3.967 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.164 0.836 33 H 0.232 0.768 34 H 0.157 0.843 35 H 0.134 0.866 36 H 0.420 0.580 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.028 0.972 41 H 0.070 0.930 42 H 0.116 0.884 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.067 0.933 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.245 22.243 18.446 28.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.182 4.182 3 C -0.248 4.248 4 C -0.110 4.110 5 O -0.091 6.091 6 C -0.073 4.073 7 C -0.094 4.094 8 C 0.301 3.699 9 O -0.458 6.458 10 N -0.356 5.356 11 C 0.039 3.961 12 H 0.103 0.897 13 C -0.165 4.165 14 C -0.087 4.087 15 N -0.230 5.230 16 C -0.085 4.085 17 C 0.226 3.774 18 O -0.501 6.501 19 N -0.210 5.210 20 C -0.461 4.461 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.095 4.095 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.181 0.819 33 H 0.249 0.751 34 H 0.174 0.826 35 H 0.152 0.848 36 H 0.259 0.741 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.134 0.866 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.022 22.083 18.238 28.641 hybrid contribution -0.304 -0.331 -1.394 1.464 sum -0.326 21.752 16.845 27.513 Atomic orbital electron populations 1.20226 0.87881 1.02789 1.02948 1.20609 0.98315 0.92312 1.06975 1.22045 0.92860 1.00619 1.09240 1.24668 1.01098 0.80080 1.05168 1.83972 1.29409 1.23985 1.71770 1.21756 0.81110 0.96339 1.08112 1.20208 1.06554 0.88703 0.93898 1.20936 0.75668 0.81557 0.91705 1.90736 1.51068 1.56206 1.47806 1.45908 1.68462 1.12818 1.08451 1.21612 0.94723 0.95957 0.83771 0.89688 1.22873 0.97712 0.95960 0.99981 1.23243 0.95347 0.95939 0.94147 1.64627 1.07622 1.16536 1.34247 1.22030 0.95193 0.94604 0.96641 1.20752 0.88790 0.85131 0.82757 1.90445 1.17109 1.75631 1.66896 1.41926 1.10624 1.27726 1.40709 1.19691 0.93316 1.08991 1.24092 0.90291 1.26020 0.97199 1.00319 0.97735 1.69675 1.10169 1.38235 1.38002 0.84882 0.77967 0.77647 0.77908 1.19860 1.19577 1.19735 1.23266 0.95179 0.87831 1.03260 0.89594 0.91353 0.91882 0.81854 0.75150 0.82571 0.84780 0.74138 0.91507 0.90395 0.90067 0.95404 0.91245 0.86564 0.76981 0.91327 0.91473 0.86945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 9.99 71.24 0.71 -0.39 16 2 C -0.18 -3.41 6.16 -19.94 -0.12 -3.53 16 3 C -0.23 -3.99 10.87 22.19 0.24 -3.75 16 4 C -0.04 -0.74 12.09 66.97 0.81 0.07 16 5 O -0.19 -4.33 10.65 -2.52 -0.03 -4.36 16 6 C -0.02 -0.46 5.81 24.83 0.14 -0.32 16 7 C -0.05 -0.71 5.85 29.10 0.17 -0.54 16 8 C 0.51 10.25 7.82 87.66 0.69 10.94 16 9 O -0.58 -17.64 15.69 -3.03 -0.05 -17.68 16 10 N -0.70 -11.40 5.06 -438.37 -2.22 -13.62 16 11 C 0.15 3.17 3.34 45.87 0.15 3.32 16 12 H 0.09 2.08 7.56 -2.38 -0.02 2.07 16 13 C -0.13 -3.42 6.78 31.80 0.22 -3.20 16 14 C 0.04 1.40 5.30 86.65 0.46 1.86 16 15 N -0.51 -15.41 5.26 -887.57 -4.67 -20.07 16 16 C 0.05 1.55 5.52 85.56 0.47 2.02 16 17 C 0.44 20.41 7.49 87.66 0.66 21.07 16 18 O -0.61 -33.02 13.10 -3.07 -0.04 -33.06 16 19 N -0.57 -29.00 5.29 -306.98 -1.62 -30.62 16 20 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 23 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 24 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 C 0.03 0.67 6.46 86.45 0.56 1.23 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.84 7.78 -2.39 -0.02 0.82 16 32 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.23 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.16 0.87 7.76 -2.39 -0.02 0.85 16 35 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.42 4.04 8.36 -92.71 -0.77 3.26 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 2.09 8.06 -2.38 -0.02 2.07 16 39 H 0.08 3.43 5.97 -2.39 -0.01 3.41 16 40 H 0.03 0.98 8.02 -2.38 -0.02 0.96 16 41 H 0.07 2.06 7.81 -2.39 -0.02 2.04 16 42 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 44 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 45 H 0.07 1.28 7.57 -2.38 -0.02 1.26 16 46 H 0.11 1.72 7.66 -2.39 -0.02 1.70 16 Total: -1.00 -78.24 384.37 -0.36 -78.60 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -0.48 Total: 34.25 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 6.44 Total: 10.69 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -8.23 Total: -113.31 kcal Atomic # 8 Polarization: -54.99 SS G_CDS: -0.11 Total: -55.10 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -78.24 -0.36 -78.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481692782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.469 kcal (2) G-P(sol) polarization free energy of solvation -78.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds