Wall clock time and date at job start Tue Mar 31 2020 19:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40365 * 126.64826 * 2 1 4 4 C 1.35128 * 107.11659 * 180.22234 * 3 2 1 5 5 O 1.33937 * 108.76760 * 359.78063 * 4 3 2 6 6 C 1.34916 * 109.38091 * 359.97438 * 5 4 3 7 7 C 1.46655 * 125.98383 * 179.97438 * 6 5 4 8 8 O 1.21695 * 120.00125 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00282 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99955 * 180.02562 * 9 7 6 11 11 H 1.08994 * 110.27877 * 324.36431 * 10 9 7 12 12 C 1.54598 * 110.30950 * 86.45338 * 10 9 7 13 13 C 1.54945 * 102.92116 * 97.05708 * 12 10 9 14 14 N 1.48536 * 103.22699 * 37.41350 * 13 12 10 15 15 C 1.46904 * 110.99674 * 200.27974 * 14 13 12 16 16 C 1.50693 * 109.47128 * 294.09898 * 15 14 13 17 17 O 1.21293 * 119.99930 * 353.76221 * 16 15 14 18 18 N 1.34780 * 119.99874 * 173.75960 * 16 15 14 19 19 C 1.37101 * 119.99688 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00131 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99573 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00068 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 120.00070 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47145 * 269.99785 * 23 21 19 25 25 H 1.48495 * 109.47201 * 29.99572 * 23 21 19 26 26 H 1.48498 * 109.47146 * 150.00018 * 23 21 19 27 27 C 1.47904 * 105.82007 * 320.79249 * 14 13 12 28 28 H 1.09001 * 109.91652 * 265.97714 * 27 14 13 29 29 C 1.52997 * 109.91474 * 144.68353 * 27 14 13 30 30 H 1.09003 * 109.47014 * 270.15552 * 1 2 3 31 31 H 1.08997 * 109.46976 * 30.15568 * 1 2 3 32 32 H 1.09000 * 109.47045 * 150.15641 * 1 2 3 33 33 H 1.08001 * 126.43932 * 0.02562 * 3 2 1 34 34 H 1.08000 * 125.62167 * 179.77495 * 4 3 2 35 35 H 0.97004 * 119.99883 * 359.97438 * 9 7 6 36 36 H 1.09003 * 110.72532 * 338.69957 * 12 10 9 37 37 H 1.08995 * 110.72447 * 215.41001 * 12 10 9 38 38 H 1.09005 * 110.66376 * 278.98162 * 13 12 10 39 39 H 1.08996 * 110.81018 * 155.91789 * 13 12 10 40 40 H 1.09000 * 109.46843 * 174.10226 * 15 14 13 41 41 H 1.09000 * 109.47126 * 54.10397 * 15 14 13 42 42 H 0.96996 * 119.99824 * 0.02562 * 18 16 15 43 43 H 0.96998 * 120.00251 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.47173 * 61.45568 * 29 27 14 45 45 H 1.08999 * 109.47091 * 181.45272 * 29 27 14 46 46 H 1.09002 * 109.47446 * 301.45345 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 -0.0050 5 8 3.6005 -0.6648 -0.0032 6 6 2.3220 -1.0956 0.0035 7 6 1.8842 -2.4953 0.0069 8 8 0.6968 -2.7614 0.0126 9 7 2.7970 -3.4869 0.0038 10 6 2.3597 -4.8850 0.0066 11 1 1.4564 -4.9971 0.6061 12 6 2.1078 -5.3714 -1.4391 13 6 3.4307 -6.0943 -1.7970 14 7 3.8101 -6.7586 -0.5238 15 6 5.2414 -7.0892 -0.5087 16 6 5.5275 -8.1308 -1.5594 17 8 4.6137 -8.6385 -2.1747 18 7 6.7987 -8.4983 -1.8155 19 6 7.0589 -9.4456 -2.7718 20 1 6.2454 -9.8971 -3.3201 21 6 8.3694 -9.8248 -3.0354 22 7 8.6190 -10.7332 -3.9516 23 14 9.7765 -9.0444 -2.0863 24 1 10.2454 -7.8320 -2.8042 25 1 9.3082 -8.6658 -0.7290 26 1 10.8945 -10.0150 -1.9714 27 6 3.4772 -5.7957 0.5483 28 1 4.3547 -5.1989 0.7970 29 6 2.9838 -6.5454 1.7874 30 1 -0.3633 0.0028 1.0277 31 1 -0.3633 0.8886 -0.5162 32 1 -0.3633 -0.8914 -0.5114 33 1 2.0307 2.1595 0.0004 34 1 4.5047 1.2915 -0.0098 35 1 3.7436 -3.2747 -0.0011 36 1 1.9373 -4.5263 -2.1062 37 1 1.2680 -6.0655 -1.4718 38 1 4.1928 -5.3752 -2.0977 39 1 3.2685 -6.8322 -2.5826 40 1 5.5141 -7.4782 0.4723 41 1 5.8237 -6.1920 -0.7185 42 1 7.5293 -8.0925 -1.3232 43 1 9.5338 -10.9982 -4.1354 44 1 3.7741 -7.2000 2.1546 45 1 2.7162 -5.8282 2.5634 46 1 2.1095 -7.1420 1.5270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489248355.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:47 Heat of formation + Delta-G solvation = -41.632746 kcal Electronic energy + Delta-G solvation = -28803.265999 eV Core-core repulsion = 24695.006933 eV Total energy + Delta-G solvation = -4108.259065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.07246 -40.33571 -38.98620 -37.77979 -34.92997 -34.19901 -33.84259 -31.77226 -31.43132 -31.30923 -30.48921 -28.05531 -26.62578 -25.41415 -23.95986 -23.24506 -21.87880 -21.10643 -20.55966 -19.90896 -19.35851 -18.38641 -18.30098 -16.83306 -16.64111 -16.39899 -15.98078 -15.29871 -15.17057 -14.88714 -14.78756 -14.37378 -14.17724 -13.90305 -13.63531 -13.40211 -13.38067 -13.26540 -13.00319 -12.89880 -12.64461 -12.46736 -12.15468 -12.14603 -11.97530 -11.67430 -11.42421 -11.30706 -11.27189 -10.92630 -10.80028 -10.60762 -10.36232 -10.09077 -9.98440 -9.56787 -9.39969 -8.92982 -8.60791 -8.20577 -8.11567 -6.31700 -3.83094 0.70368 1.95593 2.33042 2.86141 2.89600 3.01041 3.04922 3.13633 3.72969 3.91782 4.09159 4.27430 4.35093 4.39336 4.56723 4.60594 4.81442 4.98260 5.09625 5.14824 5.18737 5.20907 5.30618 5.37700 5.39544 5.41221 5.51458 5.58122 5.66171 5.70188 5.77630 5.79705 5.85221 5.87172 5.92098 6.04743 6.08523 6.21885 6.27759 6.40841 6.47909 7.03948 7.07501 7.17805 7.57623 7.79957 8.13725 8.59587 8.94760 9.41714 9.82782 10.81453 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017271 B = 0.002410 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.831207 B =11615.269628 C =12436.519094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.086 4.086 3 C -0.226 4.226 4 C -0.003 4.003 5 O -0.164 6.164 6 C -0.087 4.087 7 C 0.605 3.395 8 O -0.516 6.516 9 N -0.713 5.713 10 C 0.138 3.862 11 H 0.104 0.896 12 C -0.130 4.130 13 C 0.039 3.961 14 N -0.484 5.484 15 C 0.035 3.965 16 C 0.453 3.547 17 O -0.557 6.557 18 N -0.592 5.592 19 C -0.303 4.303 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.276 1.276 27 C 0.055 3.945 28 H 0.056 0.944 29 C -0.133 4.133 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.156 0.844 34 H 0.210 0.790 35 H 0.403 0.597 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.038 0.962 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.048 0.952 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.371 24.520 12.157 28.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.245 4.245 4 C -0.073 4.073 5 O -0.060 6.060 6 C -0.139 4.139 7 C 0.391 3.609 8 O -0.393 6.393 9 N -0.363 5.363 10 C 0.033 3.967 11 H 0.122 0.878 12 C -0.169 4.169 13 C -0.089 4.089 14 N -0.209 5.209 15 C -0.097 4.097 16 C 0.239 3.761 17 O -0.438 6.438 18 N -0.232 5.232 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.202 1.202 27 C -0.054 4.054 28 H 0.074 0.926 29 C -0.191 4.191 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.174 0.826 34 H 0.227 0.773 35 H 0.238 0.762 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.123 0.877 40 H 0.110 0.890 41 H 0.066 0.934 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.718 23.094 11.688 28.014 hybrid contribution 2.503 1.698 0.561 3.076 sum -8.215 24.791 12.249 28.846 Atomic orbital electron populations 1.20440 0.88117 1.03720 1.02938 1.20674 0.97751 0.90979 0.99493 1.21767 0.92445 1.00223 1.10093 1.24385 1.00030 0.80564 1.02273 1.84067 1.28346 1.22773 1.70780 1.21892 0.81535 0.94845 1.15655 1.16497 0.85800 0.81748 0.76812 1.90859 1.15593 1.82300 1.50572 1.46108 1.09789 1.06060 1.74377 1.21990 0.98182 0.78455 0.98065 0.87839 1.22924 0.98932 1.00182 0.94897 1.23337 0.94895 0.97057 0.93587 1.64514 1.16401 1.37655 1.02282 1.22113 0.88956 0.98169 1.00480 1.19568 0.83374 0.86480 0.86709 1.90556 1.43835 1.57132 1.52284 1.42215 1.05962 1.38608 1.36409 1.19421 0.95043 1.15393 1.13351 0.86259 1.25038 0.97398 0.96790 0.96977 1.69620 1.20861 1.30141 1.31537 0.86679 0.82890 0.79866 0.79990 1.19714 1.19510 1.20171 1.22665 0.96358 0.92462 0.93906 0.92626 1.21715 1.02338 1.00050 0.94972 0.90749 0.91445 0.89374 0.82629 0.77303 0.76204 0.90836 0.89450 0.94410 0.87694 0.89028 0.93450 0.79793 0.91627 0.92061 0.92574 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 9.81 36.01 0.35 -0.47 16 2 C -0.09 -0.83 6.20 -104.43 -0.65 -1.48 16 3 C -0.23 -1.64 10.83 -39.89 -0.43 -2.07 16 4 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 5 O -0.16 -1.51 10.40 4.97 0.05 -1.46 16 6 C -0.09 -0.93 7.13 -36.80 -0.26 -1.20 16 7 C 0.60 7.17 7.78 -12.86 -0.10 7.07 16 8 O -0.52 -7.27 14.43 5.19 0.07 -7.20 16 9 N -0.71 -7.47 5.08 -53.80 -0.27 -7.74 16 10 C 0.14 1.58 2.93 -66.57 -0.20 1.38 16 11 H 0.10 1.23 7.18 -51.93 -0.37 0.86 16 12 C -0.13 -1.68 6.78 -24.86 -0.17 -1.84 16 13 C 0.04 0.59 5.79 -1.89 -0.01 0.58 16 14 N -0.48 -7.46 4.62 -223.99 -1.03 -8.49 16 15 C 0.03 0.57 5.18 -4.98 -0.03 0.54 16 16 C 0.45 10.14 7.47 -10.99 -0.08 10.05 16 17 O -0.56 -14.68 14.39 5.55 0.08 -14.60 16 18 N -0.59 -13.95 5.09 -10.97 -0.06 -14.01 16 19 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 20 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 21 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 23 Si 0.88 19.22 27.74 -169.99 -4.71 14.51 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 27 C 0.06 0.65 2.87 -66.64 -0.19 0.46 16 28 H 0.06 0.58 7.23 -51.93 -0.38 0.21 16 29 C -0.13 -1.42 9.32 37.16 0.35 -1.08 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.91 6.45 -51.93 -0.33 0.57 16 33 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.21 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.40 3.65 8.05 -40.82 -0.33 3.32 16 36 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.04 0.56 7.91 -51.93 -0.41 0.15 16 39 H 0.10 1.95 6.84 -51.93 -0.36 1.60 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.05 0.67 7.99 -51.93 -0.41 0.26 16 42 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -34.10 380.52 -7.28 -41.37 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -6.61 Total: 12.15 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.31 Total: 4.64 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.59 Total: -55.15 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.21 Total: -23.26 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.10 -7.28 -41.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489248355.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.260 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds