Wall clock time and date at job start Tue Mar 31 2020 19:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40365 * 126.64826 * 2 1 4 4 C 1.35128 * 107.11659 * 180.22234 * 3 2 1 5 5 O 1.33937 * 108.76760 * 359.78063 * 4 3 2 6 6 C 1.34916 * 109.38091 * 359.97438 * 5 4 3 7 7 C 1.46655 * 125.98383 * 179.97438 * 6 5 4 8 8 O 1.21695 * 120.00125 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00282 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99955 * 180.02562 * 9 7 6 11 11 H 1.08994 * 110.27877 * 324.36431 * 10 9 7 12 12 C 1.54598 * 110.30950 * 86.45338 * 10 9 7 13 13 C 1.54945 * 102.92116 * 97.05708 * 12 10 9 14 14 N 1.48536 * 103.22699 * 37.41350 * 13 12 10 15 15 C 1.46904 * 110.99674 * 200.27974 * 14 13 12 16 16 C 1.50693 * 109.47128 * 294.09898 * 15 14 13 17 17 O 1.21293 * 119.99930 * 353.76221 * 16 15 14 18 18 N 1.34780 * 119.99874 * 173.75960 * 16 15 14 19 19 C 1.37101 * 119.99688 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00131 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99573 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00068 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 120.00070 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47145 * 269.99785 * 23 21 19 25 25 H 1.48495 * 109.47201 * 29.99572 * 23 21 19 26 26 H 1.48498 * 109.47146 * 150.00018 * 23 21 19 27 27 C 1.47904 * 105.82007 * 320.79249 * 14 13 12 28 28 H 1.09001 * 109.91652 * 265.97714 * 27 14 13 29 29 C 1.52997 * 109.91474 * 144.68353 * 27 14 13 30 30 H 1.09003 * 109.47014 * 270.15552 * 1 2 3 31 31 H 1.08997 * 109.46976 * 30.15568 * 1 2 3 32 32 H 1.09000 * 109.47045 * 150.15641 * 1 2 3 33 33 H 1.08001 * 126.43932 * 0.02562 * 3 2 1 34 34 H 1.08000 * 125.62167 * 179.77495 * 4 3 2 35 35 H 0.97004 * 119.99883 * 359.97438 * 9 7 6 36 36 H 1.09003 * 110.72532 * 338.69957 * 12 10 9 37 37 H 1.08995 * 110.72447 * 215.41001 * 12 10 9 38 38 H 1.09005 * 110.66376 * 278.98162 * 13 12 10 39 39 H 1.08996 * 110.81018 * 155.91789 * 13 12 10 40 40 H 1.09000 * 109.46843 * 174.10226 * 15 14 13 41 41 H 1.09000 * 109.47126 * 54.10397 * 15 14 13 42 42 H 0.96996 * 119.99824 * 0.02562 * 18 16 15 43 43 H 0.96998 * 120.00251 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.47173 * 61.45568 * 29 27 14 45 45 H 1.08999 * 109.47091 * 181.45272 * 29 27 14 46 46 H 1.09002 * 109.47446 * 301.45345 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 -0.0050 5 8 3.6005 -0.6648 -0.0032 6 6 2.3220 -1.0956 0.0035 7 6 1.8842 -2.4953 0.0069 8 8 0.6968 -2.7614 0.0126 9 7 2.7970 -3.4869 0.0038 10 6 2.3597 -4.8850 0.0066 11 1 1.4564 -4.9971 0.6061 12 6 2.1078 -5.3714 -1.4391 13 6 3.4307 -6.0943 -1.7970 14 7 3.8101 -6.7586 -0.5238 15 6 5.2414 -7.0892 -0.5087 16 6 5.5275 -8.1308 -1.5594 17 8 4.6137 -8.6385 -2.1747 18 7 6.7987 -8.4983 -1.8155 19 6 7.0589 -9.4456 -2.7718 20 1 6.2454 -9.8971 -3.3201 21 6 8.3694 -9.8248 -3.0354 22 7 8.6190 -10.7332 -3.9516 23 14 9.7765 -9.0444 -2.0863 24 1 10.2454 -7.8320 -2.8042 25 1 9.3082 -8.6658 -0.7290 26 1 10.8945 -10.0150 -1.9714 27 6 3.4772 -5.7957 0.5483 28 1 4.3547 -5.1989 0.7970 29 6 2.9838 -6.5454 1.7874 30 1 -0.3633 0.0028 1.0277 31 1 -0.3633 0.8886 -0.5162 32 1 -0.3633 -0.8914 -0.5114 33 1 2.0307 2.1595 0.0004 34 1 4.5047 1.2915 -0.0098 35 1 3.7436 -3.2747 -0.0011 36 1 1.9373 -4.5263 -2.1062 37 1 1.2680 -6.0655 -1.4718 38 1 4.1928 -5.3752 -2.0977 39 1 3.2685 -6.8322 -2.5826 40 1 5.5141 -7.4782 0.4723 41 1 5.8237 -6.1920 -0.7185 42 1 7.5293 -8.0925 -1.3232 43 1 9.5338 -10.9982 -4.1354 44 1 3.7741 -7.2000 2.1546 45 1 2.7162 -5.8282 2.5634 46 1 2.1095 -7.1420 1.5270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489248355.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:46 Heat of formation + Delta-G solvation = -68.581281 kcal Electronic energy + Delta-G solvation = -28804.434575 eV Core-core repulsion = 24695.006933 eV Total energy + Delta-G solvation = -4109.427642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.68006 -41.37046 -40.33822 -39.21792 -36.10359 -35.64438 -34.87545 -33.75873 -32.53880 -32.31918 -31.20892 -28.86577 -28.09023 -26.39098 -25.66758 -24.01699 -22.68731 -22.02685 -21.54522 -21.22186 -20.70869 -20.19032 -19.10837 -17.89953 -17.52538 -17.39827 -17.03551 -16.70582 -16.48399 -16.32170 -15.88589 -15.40714 -15.28124 -15.17591 -14.92231 -14.53361 -14.40019 -14.18195 -14.05372 -13.90926 -13.83689 -13.63594 -13.51655 -13.01772 -12.98727 -12.80702 -12.76212 -12.45611 -12.41385 -12.38454 -12.17824 -11.97662 -11.77963 -11.47941 -11.25363 -10.67792 -10.40608 -10.29513 -10.23090 -9.58146 -9.38055 -8.40457 -6.01302 0.01202 1.30139 1.35633 1.40431 1.44794 1.64921 1.96686 2.04963 2.13454 2.23518 2.64115 3.15508 3.16799 3.40033 3.66430 3.72600 3.81159 3.94796 3.98409 4.14388 4.18027 4.27058 4.34473 4.41288 4.49049 4.53121 4.62776 4.70486 4.74749 4.76849 4.79999 4.87673 4.97726 5.02392 5.10463 5.10953 5.20870 5.30179 5.39954 5.46643 5.53634 5.82145 5.86837 5.93300 6.04281 6.37905 6.60679 6.89564 6.96852 7.40753 7.98590 8.77282 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017271 B = 0.002410 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.831207 B =11615.269628 C =12436.519094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.095 4.095 3 C -0.237 4.237 4 C 0.014 3.986 5 O -0.172 6.172 6 C -0.120 4.120 7 C 0.603 3.397 8 O -0.548 6.548 9 N -0.703 5.703 10 C 0.148 3.852 11 H 0.101 0.899 12 C -0.123 4.123 13 C 0.042 3.958 14 N -0.507 5.507 15 C 0.046 3.954 16 C 0.452 3.548 17 O -0.606 6.606 18 N -0.592 5.592 19 C -0.326 4.326 20 H 0.054 0.946 21 C -0.017 4.017 22 N -0.936 5.936 23 Si 0.965 3.035 24 H -0.257 1.257 25 H -0.230 1.230 26 H -0.276 1.276 27 C 0.062 3.938 28 H 0.082 0.918 29 C -0.131 4.131 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.181 0.819 34 H 0.254 0.746 35 H 0.412 0.588 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.122 0.878 41 H 0.082 0.918 42 H 0.389 0.611 43 H 0.279 0.721 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.155 28.436 15.228 33.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.256 4.256 4 C -0.055 4.055 5 O -0.067 6.067 6 C -0.171 4.171 7 C 0.391 3.609 8 O -0.428 6.428 9 N -0.354 5.354 10 C 0.043 3.957 11 H 0.118 0.882 12 C -0.162 4.162 13 C -0.086 4.086 14 N -0.232 5.232 15 C -0.085 4.085 16 C 0.239 3.761 17 O -0.489 6.489 18 N -0.235 5.235 19 C -0.455 4.455 20 H 0.072 0.928 21 C -0.216 4.216 22 N -0.577 5.577 23 Si 0.785 3.215 24 H -0.182 1.182 25 H -0.153 1.153 26 H -0.201 1.201 27 C -0.046 4.046 28 H 0.100 0.900 29 C -0.189 4.189 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.198 0.802 34 H 0.269 0.731 35 H 0.249 0.751 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.140 0.860 41 H 0.100 0.900 42 H 0.225 0.775 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.502 27.032 14.785 31.962 hybrid contribution 1.687 0.513 -0.480 1.827 sum -6.816 27.544 14.304 31.777 Atomic orbital electron populations 1.20430 0.88031 1.03549 1.03121 1.21035 0.98264 0.91859 0.98629 1.22101 0.92358 1.00757 1.10370 1.25317 1.01395 0.79679 0.99132 1.84055 1.27485 1.24185 1.71020 1.21654 0.82515 0.94349 1.18582 1.16697 0.85482 0.82533 0.76150 1.90838 1.16852 1.82979 1.52146 1.45966 1.10152 1.05298 1.73973 1.21798 0.98256 0.79093 0.96586 0.88151 1.22822 0.97422 0.99749 0.96224 1.23151 0.96400 0.96099 0.92911 1.64436 1.16057 1.39614 1.03104 1.22051 0.90111 0.97249 0.99116 1.20831 0.82229 0.86356 0.86651 1.90548 1.45342 1.58859 1.54182 1.42028 1.07242 1.38165 1.36026 1.18977 0.94075 1.17369 1.15073 0.92804 1.26135 1.00620 0.96936 0.97869 1.69810 1.22099 1.32086 1.33672 0.85360 0.77352 0.78842 0.79929 1.18161 1.15274 1.20138 1.22699 0.97199 0.91954 0.92797 0.90036 1.21724 1.01861 1.00388 0.94914 0.90378 0.89474 0.91612 0.80181 0.73060 0.75091 0.90783 0.90309 0.93551 0.92066 0.86018 0.89975 0.77525 0.91199 0.91746 0.90443 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.57 9.81 71.24 0.70 -0.87 16 2 C -0.09 -1.69 6.20 -19.74 -0.12 -1.81 16 3 C -0.24 -2.71 10.83 22.07 0.24 -2.48 16 4 C 0.01 0.13 12.08 67.10 0.81 0.94 16 5 O -0.17 -2.70 10.40 -5.12 -0.05 -2.75 16 6 C -0.12 -2.40 7.13 24.07 0.17 -2.22 16 7 C 0.60 13.91 7.78 86.44 0.67 14.58 16 8 O -0.55 -15.64 14.43 -4.33 -0.06 -15.70 16 9 N -0.70 -13.57 5.08 -442.35 -2.25 -15.82 16 10 C 0.15 3.20 2.93 45.87 0.13 3.34 16 11 H 0.10 2.31 7.18 -2.39 -0.02 2.29 16 12 C -0.12 -3.20 6.78 31.80 0.22 -2.98 16 13 C 0.04 1.30 5.79 86.65 0.50 1.80 16 14 N -0.51 -14.97 4.62 -862.58 -3.99 -18.95 16 15 C 0.05 1.38 5.18 85.55 0.44 1.82 16 16 C 0.45 20.23 7.47 87.65 0.65 20.89 16 17 O -0.61 -33.58 14.39 -3.07 -0.04 -33.63 16 18 N -0.59 -27.68 5.09 -306.99 -1.56 -29.25 16 19 C -0.33 -19.06 10.16 84.04 0.85 -18.20 16 20 H 0.05 3.77 7.39 -2.91 -0.02 3.75 16 21 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 22 N -0.94 -56.58 13.96 21.66 0.30 -56.28 16 23 Si 0.97 38.38 27.74 68.60 1.90 40.29 16 24 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 25 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 26 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 27 C 0.06 1.29 2.87 45.06 0.13 1.42 16 28 H 0.08 1.33 7.23 -2.39 -0.02 1.31 16 29 C -0.13 -2.46 9.32 71.98 0.67 -1.79 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.39 6.45 -2.39 -0.02 1.38 16 33 H 0.18 1.05 8.06 -2.91 -0.02 1.02 16 34 H 0.25 -0.15 8.06 -2.91 -0.02 -0.18 16 35 H 0.41 6.37 8.05 -92.71 -0.75 5.62 16 36 H 0.07 1.90 8.05 -2.39 -0.02 1.88 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.05 1.33 7.91 -2.38 -0.02 1.31 16 39 H 0.06 2.44 6.84 -2.39 -0.02 2.42 16 40 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 41 H 0.08 1.95 7.99 -2.39 -0.02 1.93 16 42 H 0.39 14.90 5.76 -92.71 -0.53 14.37 16 43 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -82.28 380.52 0.47 -81.80 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: -0.32 Total: 36.34 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 6.54 Total: 13.93 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -7.49 Total: -120.29 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -0.16 Total: -52.08 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.90 Total: 40.29 kcal Total: -82.28 0.47 -81.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489248355.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.223 kcal (2) G-P(sol) polarization free energy of solvation -82.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds