Wall clock time and date at job start Tue Mar 31 2020 19:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40371 * 126.64993 * 2 1 4 4 C 1.35121 * 107.11803 * 179.97438 * 3 2 1 5 5 O 1.33934 * 108.76787 * 359.75078 * 4 3 2 6 6 C 1.34915 * 109.38349 * 0.40867 * 5 4 3 7 7 C 1.46655 * 125.98822 * 179.85856 * 6 5 4 8 8 O 1.21691 * 119.99802 * 179.68797 * 7 6 5 9 9 N 1.34773 * 119.99874 * 359.69326 * 7 6 5 10 10 C 1.46503 * 119.99996 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47194 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47842 * 295.00131 * 11 10 9 13 13 N 1.46901 * 109.47002 * 55.00582 * 11 10 9 14 14 C 1.46903 * 111.00004 * 222.69755 * 13 11 10 15 15 C 1.50699 * 109.47058 * 186.11126 * 14 13 11 16 16 O 1.21290 * 119.99944 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99964 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99869 * 179.97438 * 17 15 14 19 19 H 1.08004 * 120.00085 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99833 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99760 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99909 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46964 * 60.00597 * 22 20 18 24 24 H 1.48497 * 109.47257 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47091 * 300.00562 * 22 20 18 26 26 C 1.53004 * 109.47366 * 175.00378 * 11 10 9 27 27 C 1.53004 * 117.49944 * 251.54728 * 26 11 10 28 28 C 1.52998 * 117.50250 * 182.88403 * 26 11 10 29 29 H 1.08999 * 109.47414 * 270.02573 * 1 2 3 30 30 H 1.09010 * 109.46786 * 30.02349 * 1 2 3 31 31 H 1.08995 * 109.47340 * 150.02098 * 1 2 3 32 32 H 1.08004 * 126.43988 * 359.97438 * 3 2 1 33 33 H 1.08001 * 125.61529 * 180.02562 * 4 3 2 34 34 H 0.96999 * 120.00313 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.46882 * 60.00066 * 10 9 7 36 36 H 1.08994 * 109.47666 * 300.00206 * 10 9 7 37 37 H 1.00905 * 110.99844 * 346.64893 * 13 11 10 38 38 H 1.08997 * 109.47009 * 306.11343 * 14 13 11 39 39 H 1.09003 * 109.47163 * 66.11402 * 14 13 11 40 40 H 0.97000 * 119.99712 * 359.97438 * 17 15 14 41 41 H 0.97002 * 119.99417 * 179.97438 * 21 20 18 42 42 H 1.09000 * 115.54905 * 37.21091 * 26 11 10 43 43 H 1.09001 * 117.49694 * 359.97438 * 27 26 11 44 44 H 1.08997 * 117.50359 * 145.01714 * 27 26 11 45 45 H 1.08994 * 117.49822 * 214.97358 * 28 26 11 46 46 H 1.08998 * 117.49516 * 359.97438 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3449 1.1262 0.0000 4 6 3.6183 0.6744 0.0006 5 8 3.6005 -0.6648 0.0064 6 6 2.3220 -1.0956 0.0006 7 6 1.8842 -2.4952 0.0013 8 8 0.6967 -2.7613 0.0014 9 7 2.7970 -3.4868 0.0020 10 6 2.3597 -4.8850 0.0032 11 6 3.5842 -5.8023 0.0031 12 1 4.1349 -5.6733 -0.9286 13 7 4.4530 -5.4594 1.1369 14 6 5.8657 -5.4513 0.7341 15 6 6.7333 -5.2448 1.9489 16 8 6.2248 -5.1174 3.0427 17 7 8.0742 -5.2016 1.8199 18 6 8.8634 -5.0133 2.9249 19 1 8.4107 -4.8999 3.8989 20 6 10.2459 -4.9693 2.7920 21 7 10.7967 -5.1078 1.6070 22 14 11.3213 -4.7134 4.2978 23 1 11.0888 -5.8158 5.2652 24 1 12.7493 -4.7045 3.8906 25 1 10.9805 -3.4159 4.9347 26 6 3.1309 -7.2581 0.1300 27 6 3.3993 -7.9684 1.4584 28 6 4.2177 -8.3315 0.2168 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8899 -0.5143 31 1 -0.3634 -0.8901 -0.5135 32 1 2.0307 2.1595 -0.0004 33 1 4.5046 1.2916 0.0011 34 1 3.7435 -3.2747 0.0016 35 1 1.7607 -5.0791 -0.8866 36 1 1.7610 -5.0778 0.8934 37 1 4.1872 -4.5739 1.5413 38 1 6.1157 -6.4037 0.2667 39 1 6.0364 -4.6421 0.0239 40 1 8.4808 -5.3039 0.9451 41 1 11.7618 -5.0767 1.5142 42 1 2.2133 -7.5127 -0.4004 43 1 3.8992 -7.3986 2.2417 44 1 2.6585 -8.6905 1.8017 45 1 4.0150 -9.2924 -0.2561 46 1 5.2557 -8.0005 0.1830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490634649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:09 Heat of formation + Delta-G solvation = -25.657720 kcal Electronic energy + Delta-G solvation = -28740.490979 eV Core-core repulsion = 24632.924643 eV Total energy + Delta-G solvation = -4107.566336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.91174 -39.88983 -38.72201 -37.68769 -35.42284 -34.33783 -34.01736 -33.29762 -31.26834 -30.90674 -29.66492 -27.75476 -26.16488 -24.27269 -23.74339 -22.54729 -22.02103 -21.28914 -20.38642 -19.72252 -19.25058 -18.44988 -17.89624 -16.64542 -16.51419 -16.29063 -15.94510 -15.77541 -15.44941 -14.78256 -14.52418 -14.41005 -14.30759 -13.98452 -13.77127 -13.48391 -13.34382 -13.26333 -13.20847 -12.76122 -12.47473 -12.39985 -12.02993 -11.91141 -11.71652 -11.52820 -11.22830 -11.08732 -10.97781 -10.46112 -10.39411 -10.23432 -10.04075 -9.93871 -9.81957 -9.51877 -9.41297 -8.79152 -8.50487 -8.11784 -7.98311 -6.43827 -3.84601 0.84680 2.11041 2.48195 2.96844 2.99532 3.18411 3.24331 3.28665 3.86081 3.89362 4.10994 4.29505 4.42881 4.53547 4.59370 4.69650 4.90669 5.05369 5.13006 5.22929 5.23642 5.28823 5.32667 5.33748 5.41533 5.50841 5.52569 5.60929 5.67815 5.75278 5.80780 5.83562 5.91420 5.96067 6.05655 6.14319 6.22488 6.24434 6.40826 6.61252 6.75929 7.10289 7.20197 7.52193 7.53068 7.85629 8.03681 8.58986 9.15893 9.51829 10.03402 10.73786 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009192 B = 0.003179 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.547258 B = 8805.052355 C =11313.678524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.086 4.086 3 C -0.229 4.229 4 C 0.003 3.997 5 O -0.161 6.161 6 C -0.090 4.090 7 C 0.608 3.392 8 O -0.519 6.519 9 N -0.722 5.722 10 C 0.114 3.886 11 C 0.105 3.895 12 H 0.063 0.937 13 N -0.660 5.660 14 C 0.046 3.954 15 C 0.441 3.559 16 O -0.579 6.579 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C -0.153 4.153 27 C -0.156 4.156 28 C -0.178 4.178 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.156 0.844 33 H 0.211 0.789 34 H 0.405 0.595 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.350 0.650 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.102 0.898 43 H 0.122 0.878 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.664 6.579 -9.110 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.248 4.248 4 C -0.067 4.067 5 O -0.056 6.056 6 C -0.142 4.142 7 C 0.395 3.605 8 O -0.397 6.397 9 N -0.374 5.374 10 C -0.010 4.010 11 C -0.005 4.005 12 H 0.081 0.919 13 N -0.294 5.294 14 C -0.086 4.086 15 C 0.226 3.774 16 O -0.463 6.463 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.172 4.172 27 C -0.193 4.193 28 C -0.215 4.215 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.174 0.826 33 H 0.228 0.772 34 H 0.240 0.760 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.171 0.829 38 H 0.107 0.893 39 H 0.061 0.939 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.140 0.860 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.378 5.598 -8.175 19.142 hybrid contribution 1.536 1.224 -0.417 2.008 sum -14.842 6.823 -8.593 18.458 Atomic orbital electron populations 1.20426 0.88213 1.03500 1.02964 1.20645 0.97648 0.90992 0.99581 1.21748 0.92416 1.00167 1.10488 1.24433 1.00074 0.80548 1.01608 1.84098 1.28170 1.22826 1.70519 1.21813 0.81701 0.94737 1.15928 1.16447 0.85610 0.81799 0.76691 1.90842 1.15603 1.82446 1.50793 1.45962 1.10137 1.06507 1.74811 1.21740 0.97177 0.78454 1.03599 1.21250 0.92346 0.93430 0.93514 0.91889 1.60006 1.01213 1.39489 1.28724 1.21896 0.88624 1.01544 0.96575 1.19751 0.83034 0.84716 0.89887 1.90536 1.73385 1.55014 1.27392 1.41854 1.04268 1.63273 1.10623 1.19645 0.87657 1.46362 0.89225 0.87994 1.25250 0.97247 0.97355 0.98015 1.69603 1.12131 1.50168 1.22436 0.85930 0.78289 0.79148 0.80938 1.19866 1.20981 1.19924 1.22163 0.99946 0.91534 1.03590 1.22986 1.02200 1.01788 0.92324 1.22918 0.97021 0.98220 1.03323 0.90726 0.91518 0.89525 0.82633 0.77213 0.76004 0.90353 0.89813 0.82863 0.89271 0.93936 0.77534 0.91824 0.87956 0.86014 0.90152 0.89635 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 9.82 36.00 0.35 -0.58 16 2 C -0.09 -0.97 6.20 -104.43 -0.65 -1.62 16 3 C -0.23 -2.11 10.83 -39.89 -0.43 -2.54 16 4 C 0.00 0.03 12.08 29.62 0.36 0.39 16 5 O -0.16 -1.92 10.40 4.98 0.05 -1.86 16 6 C -0.09 -1.14 7.13 -36.80 -0.26 -1.40 16 7 C 0.61 8.12 7.79 -12.87 -0.10 8.02 16 8 O -0.52 -7.86 14.74 5.20 0.08 -7.79 16 9 N -0.72 -8.53 4.90 -61.63 -0.30 -8.83 16 10 C 0.11 1.27 5.17 -4.04 -0.02 1.25 16 11 C 0.11 1.22 2.66 -67.71 -0.18 1.04 16 12 H 0.06 0.69 7.63 -51.93 -0.40 0.29 16 13 N -0.66 -9.76 3.99 -107.99 -0.43 -10.19 16 14 C 0.05 0.76 5.76 -4.97 -0.03 0.73 16 15 C 0.44 10.00 7.84 -10.98 -0.09 9.92 16 16 O -0.58 -15.29 15.91 5.55 0.09 -15.21 16 17 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 18 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 19 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 22 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 C -0.15 -1.74 5.69 -90.62 -0.52 -2.25 16 27 C -0.16 -2.05 9.86 -26.69 -0.26 -2.31 16 28 C -0.18 -2.18 10.07 -26.69 -0.27 -2.45 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 31 H 0.09 0.97 6.44 -51.93 -0.33 0.63 16 32 H 0.16 1.02 8.06 -52.48 -0.42 0.59 16 33 H 0.21 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.40 4.63 7.48 -40.82 -0.31 4.33 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.35 5.48 6.88 -39.29 -0.27 5.21 16 38 H 0.09 1.37 5.96 -51.93 -0.31 1.06 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 41 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.10 0.99 8.13 -51.93 -0.42 0.57 16 43 H 0.12 1.99 6.99 -51.93 -0.36 1.63 16 44 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.09 1.29 5.92 -51.93 -0.31 0.98 16 LS Contribution 387.11 15.07 5.83 5.83 Total: -1.00 -32.20 387.11 -7.72 -39.92 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -6.35 Total: 19.38 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -2.33 Total: 0.32 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.07 Total: -56.44 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: 0.22 Total: -24.86 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.20 -7.72 -39.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490634649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.267 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds