Wall clock time and date at job start Tue Mar 31 2020 19:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40371 * 126.64993 * 2 1 4 4 C 1.35121 * 107.11803 * 179.97438 * 3 2 1 5 5 O 1.33934 * 108.76787 * 359.75078 * 4 3 2 6 6 C 1.34915 * 109.38349 * 0.40867 * 5 4 3 7 7 C 1.46655 * 125.98822 * 179.85856 * 6 5 4 8 8 O 1.21691 * 119.99802 * 179.68797 * 7 6 5 9 9 N 1.34773 * 119.99874 * 359.69326 * 7 6 5 10 10 C 1.46503 * 119.99996 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47194 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47842 * 295.00131 * 11 10 9 13 13 N 1.46901 * 109.47002 * 55.00582 * 11 10 9 14 14 C 1.46903 * 111.00004 * 222.69755 * 13 11 10 15 15 C 1.50699 * 109.47058 * 186.11126 * 14 13 11 16 16 O 1.21290 * 119.99944 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99964 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99869 * 179.97438 * 17 15 14 19 19 H 1.08004 * 120.00085 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99833 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99760 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99909 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46964 * 60.00597 * 22 20 18 24 24 H 1.48497 * 109.47257 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47091 * 300.00562 * 22 20 18 26 26 C 1.53004 * 109.47366 * 175.00378 * 11 10 9 27 27 C 1.53004 * 117.49944 * 251.54728 * 26 11 10 28 28 C 1.52998 * 117.50250 * 182.88403 * 26 11 10 29 29 H 1.08999 * 109.47414 * 270.02573 * 1 2 3 30 30 H 1.09010 * 109.46786 * 30.02349 * 1 2 3 31 31 H 1.08995 * 109.47340 * 150.02098 * 1 2 3 32 32 H 1.08004 * 126.43988 * 359.97438 * 3 2 1 33 33 H 1.08001 * 125.61529 * 180.02562 * 4 3 2 34 34 H 0.96999 * 120.00313 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.46882 * 60.00066 * 10 9 7 36 36 H 1.08994 * 109.47666 * 300.00206 * 10 9 7 37 37 H 1.00905 * 110.99844 * 346.64893 * 13 11 10 38 38 H 1.08997 * 109.47009 * 306.11343 * 14 13 11 39 39 H 1.09003 * 109.47163 * 66.11402 * 14 13 11 40 40 H 0.97000 * 119.99712 * 359.97438 * 17 15 14 41 41 H 0.97002 * 119.99417 * 179.97438 * 21 20 18 42 42 H 1.09000 * 115.54905 * 37.21091 * 26 11 10 43 43 H 1.09001 * 117.49694 * 359.97438 * 27 26 11 44 44 H 1.08997 * 117.50359 * 145.01714 * 27 26 11 45 45 H 1.08994 * 117.49822 * 214.97358 * 28 26 11 46 46 H 1.08998 * 117.49516 * 359.97438 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3449 1.1262 0.0000 4 6 3.6183 0.6744 0.0006 5 8 3.6005 -0.6648 0.0064 6 6 2.3220 -1.0956 0.0006 7 6 1.8842 -2.4952 0.0013 8 8 0.6967 -2.7613 0.0014 9 7 2.7970 -3.4868 0.0020 10 6 2.3597 -4.8850 0.0032 11 6 3.5842 -5.8023 0.0031 12 1 4.1349 -5.6733 -0.9286 13 7 4.4530 -5.4594 1.1369 14 6 5.8657 -5.4513 0.7341 15 6 6.7333 -5.2448 1.9489 16 8 6.2248 -5.1174 3.0427 17 7 8.0742 -5.2016 1.8199 18 6 8.8634 -5.0133 2.9249 19 1 8.4107 -4.8999 3.8989 20 6 10.2459 -4.9693 2.7920 21 7 10.7967 -5.1078 1.6070 22 14 11.3213 -4.7134 4.2978 23 1 11.0888 -5.8158 5.2652 24 1 12.7493 -4.7045 3.8906 25 1 10.9805 -3.4159 4.9347 26 6 3.1309 -7.2581 0.1300 27 6 3.3993 -7.9684 1.4584 28 6 4.2177 -8.3315 0.2168 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8899 -0.5143 31 1 -0.3634 -0.8901 -0.5135 32 1 2.0307 2.1595 -0.0004 33 1 4.5046 1.2916 0.0011 34 1 3.7435 -3.2747 0.0016 35 1 1.7607 -5.0791 -0.8866 36 1 1.7610 -5.0778 0.8934 37 1 4.1872 -4.5739 1.5413 38 1 6.1157 -6.4037 0.2667 39 1 6.0364 -4.6421 0.0239 40 1 8.4808 -5.3039 0.9451 41 1 11.7618 -5.0767 1.5142 42 1 2.2133 -7.5127 -0.4004 43 1 3.8992 -7.3986 2.2417 44 1 2.6585 -8.6905 1.8017 45 1 4.0150 -9.2924 -0.2561 46 1 5.2557 -8.0005 0.1830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490634649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:08 Heat of formation + Delta-G solvation = -48.374480 kcal Electronic energy + Delta-G solvation = -28741.476052 eV Core-core repulsion = 24632.924643 eV Total energy + Delta-G solvation = -4108.551409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.71141 -40.93348 -40.17098 -39.10243 -36.41006 -35.98745 -35.14231 -34.52781 -33.24253 -31.80588 -30.66893 -28.66640 -27.72902 -25.73589 -24.90975 -23.42791 -23.00125 -22.12042 -21.31574 -21.12005 -20.60189 -19.90907 -19.34024 -17.71801 -17.52240 -17.38410 -17.15549 -16.90390 -16.59972 -16.41280 -15.84933 -15.76428 -15.56186 -15.22456 -14.92803 -14.80079 -14.36767 -14.10897 -14.06117 -13.91371 -13.61082 -13.55067 -13.46053 -13.12769 -12.88240 -12.82137 -12.79082 -12.42760 -12.32921 -12.13072 -12.09326 -11.49441 -11.37857 -11.02022 -10.79378 -10.70458 -10.37958 -10.31408 -10.00378 -9.60985 -9.35418 -8.46092 -5.94386 -0.02057 1.37344 1.39367 1.41530 1.51960 1.65118 2.01947 2.06275 2.12734 2.28617 2.77340 3.09685 3.21162 3.46757 3.62047 3.72097 3.78885 3.91030 4.00975 4.11500 4.22429 4.35504 4.39162 4.41728 4.50256 4.50982 4.55106 4.61201 4.71585 4.74976 4.75810 4.87301 4.99411 5.07642 5.09608 5.17968 5.23465 5.40074 5.41283 5.44665 5.63984 5.81227 5.86330 6.07708 6.26886 6.30483 6.61132 6.88627 7.13800 7.57522 8.13386 8.70996 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009192 B = 0.003179 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.547258 B = 8805.052355 C =11313.678524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.092 4.092 3 C -0.233 4.233 4 C 0.009 3.991 5 O -0.177 6.177 6 C -0.125 4.125 7 C 0.604 3.396 8 O -0.546 6.546 9 N -0.717 5.717 10 C 0.120 3.880 11 C 0.111 3.889 12 H 0.080 0.920 13 N -0.671 5.671 14 C 0.062 3.938 15 C 0.440 3.560 16 O -0.620 6.620 17 N -0.573 5.573 18 C -0.333 4.333 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.920 5.920 22 Si 0.989 3.011 23 H -0.274 1.274 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.138 4.138 27 C -0.172 4.172 28 C -0.177 4.177 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.184 0.816 33 H 0.248 0.752 34 H 0.406 0.594 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.344 0.656 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.129 0.871 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.660 7.400 -10.441 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.252 4.252 4 C -0.061 4.061 5 O -0.073 6.073 6 C -0.176 4.176 7 C 0.392 3.608 8 O -0.426 6.426 9 N -0.368 5.368 10 C -0.003 4.003 11 C 0.001 3.999 12 H 0.098 0.902 13 N -0.305 5.305 14 C -0.070 4.070 15 C 0.227 3.773 16 O -0.506 6.506 17 N -0.210 5.210 18 C -0.462 4.462 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.813 3.187 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.157 4.157 27 C -0.209 4.209 28 C -0.213 4.213 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.202 0.798 33 H 0.264 0.736 34 H 0.242 0.758 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.164 0.836 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.146 0.854 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.123 0.877 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.366 6.404 -9.540 19.997 hybrid contribution 1.501 1.021 0.006 1.816 sum -14.865 7.426 -9.534 19.157 Atomic orbital electron populations 1.20438 0.87545 1.03839 1.03104 1.21056 0.98452 0.91545 0.98471 1.22109 0.92035 1.00922 1.10134 1.25300 1.01607 0.79708 0.99460 1.84079 1.27880 1.24332 1.71012 1.21785 0.82447 0.94750 1.18654 1.16622 0.85429 0.82455 0.76299 1.90814 1.16491 1.83002 1.52283 1.45928 1.10044 1.06572 1.74278 1.21700 0.96840 0.78022 1.03721 1.21302 0.91987 0.93705 0.92898 0.90182 1.59979 1.00722 1.39273 1.30479 1.21740 0.88362 1.03250 0.93679 1.20826 0.82838 0.82333 0.91280 1.90507 1.74074 1.56254 1.29807 1.41910 1.04980 1.64015 1.10128 1.19596 0.88762 1.48572 0.89301 0.90486 1.25983 0.97793 0.96503 1.00811 1.69661 1.12674 1.50010 1.23709 0.85041 0.77084 0.78888 0.77660 1.19912 1.19474 1.19674 1.22279 1.00505 0.90909 1.02008 1.22854 1.03141 1.02707 0.92243 1.22939 0.96283 0.99489 1.02636 0.90612 0.89089 0.91224 0.79820 0.73592 0.75787 0.88807 0.91057 0.83585 0.87718 0.91255 0.77035 0.91322 0.85355 0.89634 0.88831 0.87670 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.77 9.82 71.23 0.70 -1.07 16 2 C -0.09 -2.02 6.20 -19.74 -0.12 -2.15 16 3 C -0.23 -3.81 10.83 22.07 0.24 -3.57 16 4 C 0.01 0.14 12.08 67.10 0.81 0.95 16 5 O -0.18 -4.10 10.40 -5.08 -0.05 -4.15 16 6 C -0.13 -3.16 7.13 24.07 0.17 -2.99 16 7 C 0.60 16.33 7.79 86.44 0.67 17.00 16 8 O -0.55 -16.85 14.74 -4.32 -0.06 -16.91 16 9 N -0.72 -16.72 4.90 -467.11 -2.29 -19.01 16 10 C 0.12 2.56 5.17 86.38 0.45 3.01 16 11 C 0.11 2.39 2.66 44.91 0.12 2.51 16 12 H 0.08 1.53 7.63 -2.39 -0.02 1.51 16 13 N -0.67 -19.63 3.99 -495.57 -1.98 -21.61 16 14 C 0.06 1.99 5.76 85.56 0.49 2.48 16 15 C 0.44 20.32 7.84 87.66 0.69 21.01 16 16 O -0.62 -33.88 15.91 -3.06 -0.05 -33.93 16 17 N -0.57 -28.78 5.29 -306.98 -1.62 -30.40 16 18 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 19 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 20 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 21 N -0.92 -49.01 13.05 21.66 0.28 -48.73 16 22 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 C -0.14 -2.86 5.69 -10.79 -0.06 -2.92 16 27 C -0.17 -4.44 9.86 30.62 0.30 -4.14 16 28 C -0.18 -4.05 10.07 30.62 0.31 -3.74 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.07 1.57 6.44 -2.39 -0.02 1.56 16 32 H 0.18 1.82 8.06 -2.91 -0.02 1.79 16 33 H 0.25 1.77 8.06 -2.91 -0.02 1.74 16 34 H 0.41 9.14 7.48 -92.71 -0.69 8.45 16 35 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.34 10.87 6.88 -89.69 -0.62 10.25 16 38 H 0.10 3.09 5.96 -2.39 -0.01 3.08 16 39 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 41 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 42 H 0.13 2.07 8.13 -2.39 -0.02 2.05 16 43 H 0.09 2.89 6.99 -2.39 -0.02 2.87 16 44 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.08 2.06 5.92 -2.39 -0.01 2.04 16 Total: -1.00 -71.95 387.11 1.31 -70.65 By element: Atomic # 1 Polarization: 52.05 SS G_CDS: -0.99 Total: 51.05 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 6.05 Total: 8.36 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -5.61 Total: -119.75 kcal Atomic # 8 Polarization: -54.82 SS G_CDS: -0.17 Total: -54.99 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -71.95 1.31 -70.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490634649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.274 kcal (2) G-P(sol) polarization free energy of solvation -71.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds