Wall clock time and date at job start Tue Mar 31 2020 19:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40363 * 126.44209 * 2 1 4 4 C 1.36543 * 106.71317 * 180.02562 * 3 2 1 5 5 C 1.46654 * 125.99144 * 179.97438 * 4 3 2 6 6 O 1.21694 * 120.00012 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99894 * 179.97438 * 5 4 3 8 8 C 1.47015 * 125.64845 * 359.97139 * 7 5 4 9 9 C 1.54325 * 107.27065 * 178.98781 * 8 7 5 10 10 C 1.55157 * 102.94374 * 337.80787 * 9 8 7 11 11 H 1.09000 * 111.00346 * 277.43176 * 10 9 8 12 12 N 1.46896 * 111.00696 * 153.57676 * 10 9 8 13 13 C 1.46900 * 110.99978 * 155.00190 * 12 10 9 14 14 C 1.50703 * 109.46998 * 179.97438 * 13 12 10 15 15 O 1.21288 * 119.99930 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99900 * 180.02562 * 14 13 12 17 17 C 1.37097 * 119.99937 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99715 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99935 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00236 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99877 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46741 * 90.00206 * 21 19 17 23 23 H 1.48491 * 109.47147 * 210.00237 * 21 19 17 24 24 H 1.48494 * 109.47194 * 330.00913 * 21 19 17 25 25 C 1.47425 * 125.64271 * 180.02562 * 7 5 4 26 26 O 1.34917 * 108.01995 * 0.22482 * 4 3 2 27 27 C 1.33932 * 109.38675 * 359.62564 * 26 4 3 28 28 C 1.50692 * 125.61732 * 180.16889 * 27 26 4 29 29 H 1.08997 * 109.47082 * 90.02749 * 1 2 3 30 30 H 1.09004 * 109.46781 * 210.02056 * 1 2 3 31 31 H 1.08997 * 109.46984 * 330.02127 * 1 2 3 32 32 H 1.08007 * 126.64425 * 359.96417 * 3 2 1 33 33 H 1.09000 * 109.88350 * 59.56990 * 8 7 5 34 34 H 1.08998 * 109.88602 * 298.40656 * 8 7 5 35 35 H 1.08996 * 110.72124 * 219.44887 * 9 8 7 36 36 H 1.08993 * 110.72326 * 96.17079 * 9 8 7 37 37 H 1.00897 * 111.00138 * 31.04945 * 12 10 9 38 38 H 1.08994 * 109.47388 * 299.99718 * 13 12 10 39 39 H 1.09007 * 109.47293 * 59.99987 * 13 12 10 40 40 H 0.96999 * 119.99644 * 359.97438 * 16 14 13 41 41 H 0.97000 * 119.99988 * 180.02562 * 20 19 17 42 42 H 1.08999 * 110.36633 * 85.25141 * 25 7 5 43 43 H 1.08996 * 110.37033 * 322.91522 * 25 7 5 44 44 H 1.09001 * 109.47384 * 270.24128 * 28 27 26 45 45 H 1.08999 * 109.47107 * 30.24348 * 28 27 26 46 46 H 1.09005 * 109.47095 * 150.24495 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6261 0.6682 -0.0006 5 6 4.8379 1.4942 -0.0013 6 8 4.7471 2.7078 -0.0019 7 7 6.0521 0.9093 -0.0013 8 6 6.3056 -0.5388 0.0000 9 6 7.8359 -0.7362 -0.0266 10 6 8.3492 0.6057 -0.6124 11 1 8.2892 0.6053 -1.7008 12 7 9.7192 0.8868 -0.1629 13 6 10.4147 1.7663 -1.1120 14 6 11.8134 2.0322 -0.6181 15 8 12.1933 1.5381 0.4224 16 7 12.6418 2.8199 -1.3321 17 6 13.9145 3.0614 -0.8830 18 1 14.2530 2.6208 0.0431 19 6 14.7687 3.8730 -1.6194 20 7 14.3566 4.4096 -2.7459 21 14 16.5025 4.2027 -1.0071 22 1 17.4225 3.1691 -1.5461 23 1 16.9426 5.5447 -1.4657 24 1 16.5206 4.1560 0.4769 25 6 7.3460 1.6158 -0.0015 26 8 3.5858 -0.6803 -0.0060 27 6 2.3098 -1.0871 -0.0005 28 6 1.8457 -2.5207 -0.0003 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 2.0266 2.1625 -0.0005 33 1 5.8577 -0.9944 -0.8832 34 1 5.8896 -0.9872 0.9022 35 1 8.1062 -1.5688 -0.6760 36 1 8.2225 -0.8901 0.9808 37 1 10.2348 0.0317 -0.0178 38 1 10.4594 1.2841 -2.0885 39 1 9.8743 2.7092 -1.1967 40 1 12.3378 3.2153 -2.1640 41 1 14.9531 4.9759 -3.2602 42 1 7.6385 1.8720 1.0168 43 1 7.2883 2.5130 -0.6178 44 1 1.7331 -2.8664 -1.0279 45 1 2.5808 -3.1405 0.5130 46 1 0.8873 -2.5923 0.5141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490820774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:17 Heat of formation + Delta-G solvation = -53.268739 kcal Electronic energy + Delta-G solvation = -27883.289373 eV Core-core repulsion = 23774.525733 eV Total energy + Delta-G solvation = -4108.763640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.07487 -40.08045 -38.42410 -37.66278 -35.03708 -34.60653 -33.78886 -32.41134 -31.29199 -30.88105 -29.23814 -28.84876 -27.07622 -25.90003 -24.31002 -23.26981 -22.08000 -21.16502 -20.68554 -19.54713 -19.22360 -17.92983 -17.64070 -17.06348 -16.56331 -16.20739 -15.88293 -15.43829 -15.17141 -14.83610 -14.46162 -14.20351 -14.09095 -13.79425 -13.63830 -13.60804 -13.43212 -13.35893 -13.31789 -13.12559 -12.95193 -12.71830 -12.63736 -12.27964 -11.96932 -11.77192 -11.67057 -11.45490 -11.25257 -11.05408 -10.88826 -10.47929 -10.39116 -10.21821 -10.04256 -9.51292 -8.98338 -8.66265 -8.50198 -8.16957 -7.96772 -6.41722 -3.82707 0.75490 1.92653 2.24580 2.75640 2.94861 3.18078 3.26972 3.33058 3.89385 4.02472 4.05012 4.23669 4.32926 4.40480 4.44995 4.55108 4.74526 4.84078 4.91448 4.97647 5.08174 5.12872 5.15708 5.22329 5.24109 5.30057 5.33730 5.39876 5.44867 5.57446 5.58794 5.65421 5.71842 5.76571 5.84460 5.90519 5.97387 6.03880 6.09977 6.26518 6.58888 7.12503 7.18336 7.55179 7.55994 7.80477 8.05747 8.60561 9.17504 9.53702 10.04748 10.75911 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.034122 B = 0.001768 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.377588 B =15836.784552 C =16334.781215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.193 4.193 3 C -0.115 4.115 4 C -0.071 4.071 5 C 0.615 3.385 6 O -0.519 6.519 7 N -0.609 5.609 8 C 0.107 3.893 9 C -0.135 4.135 10 C 0.073 3.927 11 H 0.064 0.936 12 N -0.656 5.656 13 C 0.049 3.951 14 C 0.440 3.560 15 O -0.583 6.583 16 N -0.563 5.563 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.931 3.069 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 C 0.116 3.884 26 O -0.157 6.157 27 C 0.012 3.988 28 C -0.077 4.077 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.160 0.840 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.356 0.644 38 H 0.046 0.954 39 H 0.087 0.913 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.508 -14.335 1.439 31.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.194 4.194 3 C -0.136 4.136 4 C -0.123 4.123 5 C 0.404 3.596 6 O -0.397 6.397 7 N -0.342 5.342 8 C -0.016 4.016 9 C -0.173 4.173 10 C -0.038 4.038 11 H 0.081 0.919 12 N -0.289 5.289 13 C -0.084 4.084 14 C 0.226 3.774 15 O -0.468 6.468 16 N -0.199 5.199 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.758 3.242 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.007 4.007 26 O -0.053 6.053 27 C -0.040 4.040 28 C -0.133 4.133 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.177 0.823 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.177 0.823 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.226 0.774 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -27.146 -13.523 2.423 30.424 hybrid contribution 0.772 0.006 -1.095 1.340 sum -26.373 -13.517 1.328 29.665 Atomic orbital electron populations 1.20194 0.88606 1.02781 1.02274 1.20209 0.97512 0.91750 1.09949 1.21816 0.90453 1.00524 1.00782 1.21891 0.95902 0.80250 1.14248 1.16130 0.80144 0.85968 0.77383 1.90907 1.85378 1.12036 1.51398 1.48286 1.05564 1.08313 1.72079 1.22046 0.96480 0.80717 1.02371 1.22875 0.93500 0.97563 1.03398 1.22653 0.89835 0.93731 0.97578 0.91855 1.59916 1.00748 1.21214 1.47061 1.21772 0.94983 0.98180 0.93428 1.19755 0.86497 0.84439 0.86723 1.90524 1.76878 1.54560 1.24815 1.41862 1.12430 1.42995 1.22623 1.19708 0.87867 1.27658 1.07741 0.87881 1.25270 1.00380 0.96614 0.95667 1.69611 1.37352 1.33022 1.14238 0.85847 0.81626 0.77556 0.79199 1.20437 1.20916 1.19390 1.22367 0.79959 0.95475 1.02895 1.84089 1.28515 1.21790 1.70949 1.22610 0.80850 0.97194 1.03357 1.20399 1.01998 0.87032 1.03896 0.91272 0.91496 0.91273 0.82279 0.91009 0.90853 0.89690 0.89038 0.82297 0.93583 0.89447 0.77432 0.91850 0.89522 0.90098 0.89605 0.90139 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.17 36.01 0.37 -0.07 16 2 C -0.19 -1.63 6.14 -104.93 -0.64 -2.27 16 3 C -0.12 -1.23 10.57 -39.39 -0.42 -1.64 16 4 C -0.07 -0.85 6.95 -36.80 -0.26 -1.10 16 5 C 0.62 8.63 7.82 -12.86 -0.10 8.53 16 6 O -0.52 -8.87 17.12 5.19 0.09 -8.78 16 7 N -0.61 -7.59 3.33 -172.07 -0.57 -8.16 16 8 C 0.11 1.02 5.54 -3.07 -0.02 1.00 16 9 C -0.14 -1.25 6.35 -24.90 -0.16 -1.41 16 10 C 0.07 0.88 3.38 -65.56 -0.22 0.66 16 11 H 0.06 0.73 7.83 -51.93 -0.41 0.32 16 12 N -0.66 -10.03 6.04 -105.72 -0.64 -10.67 16 13 C 0.05 0.84 6.03 -4.97 -0.03 0.81 16 14 C 0.44 10.30 7.82 -10.98 -0.09 10.21 16 15 O -0.58 -15.67 15.78 5.55 0.09 -15.59 16 16 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 17 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 18 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 21 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 C 0.12 1.53 6.60 -2.52 -0.02 1.51 16 26 O -0.16 -1.59 8.28 4.98 0.04 -1.55 16 27 C 0.01 0.10 7.31 -35.42 -0.26 -0.16 16 28 C -0.08 -0.30 10.21 36.00 0.37 0.06 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.25 7.13 -51.93 -0.37 -0.12 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.16 1.59 8.06 -52.48 -0.42 1.16 16 33 H 0.07 0.62 7.67 -51.93 -0.40 0.22 16 34 H 0.07 0.65 7.80 -51.93 -0.40 0.25 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.36 5.45 8.14 -39.29 -0.32 5.13 16 38 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16 40 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.08 1.14 8.04 -51.93 -0.42 0.73 16 44 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.09 0.21 7.13 -51.93 -0.37 -0.16 16 LS Contribution 388.20 15.07 5.85 5.85 Total: -1.00 -34.04 388.20 -7.96 -42.00 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -6.75 Total: 10.88 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -1.71 Total: 8.11 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.54 Total: -57.02 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: 0.22 Total: -25.91 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.04 -7.96 -42.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490820774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.267 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds