Wall clock time and date at job start Tue Mar 31 2020 19:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40363 * 126.44209 * 2 1 4 4 C 1.36543 * 106.71317 * 180.02562 * 3 2 1 5 5 C 1.46654 * 125.99144 * 179.97438 * 4 3 2 6 6 O 1.21694 * 120.00012 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99894 * 179.97438 * 5 4 3 8 8 C 1.47015 * 125.64845 * 359.97139 * 7 5 4 9 9 C 1.54325 * 107.27065 * 178.98781 * 8 7 5 10 10 C 1.55157 * 102.94374 * 337.80787 * 9 8 7 11 11 H 1.09000 * 111.00346 * 277.43176 * 10 9 8 12 12 N 1.46896 * 111.00696 * 153.57676 * 10 9 8 13 13 C 1.46900 * 110.99978 * 155.00190 * 12 10 9 14 14 C 1.50703 * 109.46998 * 179.97438 * 13 12 10 15 15 O 1.21288 * 119.99930 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99900 * 180.02562 * 14 13 12 17 17 C 1.37097 * 119.99937 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99715 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99935 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00236 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99877 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46741 * 90.00206 * 21 19 17 23 23 H 1.48491 * 109.47147 * 210.00237 * 21 19 17 24 24 H 1.48494 * 109.47194 * 330.00913 * 21 19 17 25 25 C 1.47425 * 125.64271 * 180.02562 * 7 5 4 26 26 O 1.34917 * 108.01995 * 0.22482 * 4 3 2 27 27 C 1.33932 * 109.38675 * 359.62564 * 26 4 3 28 28 C 1.50692 * 125.61732 * 180.16889 * 27 26 4 29 29 H 1.08997 * 109.47082 * 90.02749 * 1 2 3 30 30 H 1.09004 * 109.46781 * 210.02056 * 1 2 3 31 31 H 1.08997 * 109.46984 * 330.02127 * 1 2 3 32 32 H 1.08007 * 126.64425 * 359.96417 * 3 2 1 33 33 H 1.09000 * 109.88350 * 59.56990 * 8 7 5 34 34 H 1.08998 * 109.88602 * 298.40656 * 8 7 5 35 35 H 1.08996 * 110.72124 * 219.44887 * 9 8 7 36 36 H 1.08993 * 110.72326 * 96.17079 * 9 8 7 37 37 H 1.00897 * 111.00138 * 31.04945 * 12 10 9 38 38 H 1.08994 * 109.47388 * 299.99718 * 13 12 10 39 39 H 1.09007 * 109.47293 * 59.99987 * 13 12 10 40 40 H 0.96999 * 119.99644 * 359.97438 * 16 14 13 41 41 H 0.97000 * 119.99988 * 180.02562 * 20 19 17 42 42 H 1.08999 * 110.36633 * 85.25141 * 25 7 5 43 43 H 1.08996 * 110.37033 * 322.91522 * 25 7 5 44 44 H 1.09001 * 109.47384 * 270.24128 * 28 27 26 45 45 H 1.08999 * 109.47107 * 30.24348 * 28 27 26 46 46 H 1.09005 * 109.47095 * 150.24495 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6261 0.6682 -0.0006 5 6 4.8379 1.4942 -0.0013 6 8 4.7471 2.7078 -0.0019 7 7 6.0521 0.9093 -0.0013 8 6 6.3056 -0.5388 0.0000 9 6 7.8359 -0.7362 -0.0266 10 6 8.3492 0.6057 -0.6124 11 1 8.2892 0.6053 -1.7008 12 7 9.7192 0.8868 -0.1629 13 6 10.4147 1.7663 -1.1120 14 6 11.8134 2.0322 -0.6181 15 8 12.1933 1.5381 0.4224 16 7 12.6418 2.8199 -1.3321 17 6 13.9145 3.0614 -0.8830 18 1 14.2530 2.6208 0.0431 19 6 14.7687 3.8730 -1.6194 20 7 14.3566 4.4096 -2.7459 21 14 16.5025 4.2027 -1.0071 22 1 17.4225 3.1691 -1.5461 23 1 16.9426 5.5447 -1.4657 24 1 16.5206 4.1560 0.4769 25 6 7.3460 1.6158 -0.0015 26 8 3.5858 -0.6803 -0.0060 27 6 2.3098 -1.0871 -0.0005 28 6 1.8457 -2.5207 -0.0003 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 2.0266 2.1625 -0.0005 33 1 5.8577 -0.9944 -0.8832 34 1 5.8896 -0.9872 0.9022 35 1 8.1062 -1.5688 -0.6760 36 1 8.2225 -0.8901 0.9808 37 1 10.2348 0.0317 -0.0178 38 1 10.4594 1.2841 -2.0885 39 1 9.8743 2.7092 -1.1967 40 1 12.3378 3.2153 -2.1640 41 1 14.9531 4.9759 -3.2602 42 1 7.6385 1.8720 1.0168 43 1 7.2883 2.5130 -0.6178 44 1 1.7331 -2.8664 -1.0279 45 1 2.5808 -3.1405 0.5130 46 1 0.8873 -2.5923 0.5141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490820774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:16 Heat of formation + Delta-G solvation = -78.072316 kcal Electronic energy + Delta-G solvation = -27884.364936 eV Core-core repulsion = 23774.525733 eV Total energy + Delta-G solvation = -4109.839204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.79546 -41.09790 -40.14771 -38.88159 -36.28674 -35.70739 -35.32006 -33.28996 -33.06368 -31.93921 -30.03785 -29.54211 -28.30641 -27.03352 -25.82436 -24.32878 -22.84913 -21.95866 -21.65685 -21.10362 -20.32482 -19.90886 -18.59001 -18.00628 -17.61922 -17.38779 -17.06823 -16.73585 -16.39606 -16.21772 -15.97553 -15.53046 -15.17867 -14.85451 -14.65132 -14.58111 -14.30081 -14.09398 -13.96475 -13.93127 -13.82891 -13.64918 -13.59301 -13.49863 -13.19165 -12.95736 -12.85097 -12.61215 -12.45792 -12.41801 -12.16862 -12.11349 -11.83918 -11.56708 -11.50819 -10.78039 -10.36264 -10.02346 -9.95095 -9.45893 -9.35650 -8.47067 -5.96017 -0.07413 1.24266 1.37959 1.41565 1.42353 1.54830 1.89906 1.97907 2.04195 2.29038 2.87725 3.20234 3.21754 3.44120 3.59380 3.63834 3.77626 3.84761 4.05708 4.19294 4.26835 4.27847 4.31475 4.45886 4.46921 4.55534 4.57210 4.68495 4.69535 4.71042 4.74172 4.83414 4.88954 4.92972 5.03584 5.04834 5.07989 5.11100 5.14774 5.40685 5.55959 5.84721 5.87221 6.06119 6.21431 6.37629 6.58965 6.78058 7.11818 7.55333 8.10090 8.70270 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.034122 B = 0.001768 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.377588 B =15836.784552 C =16334.781215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.205 4.205 3 C -0.120 4.120 4 C -0.101 4.101 5 C 0.610 3.390 6 O -0.566 6.566 7 N -0.609 5.609 8 C 0.108 3.892 9 C -0.123 4.123 10 C 0.079 3.921 11 H 0.077 0.923 12 N -0.668 5.668 13 C 0.064 3.936 14 C 0.439 3.561 15 O -0.621 6.621 16 N -0.573 5.573 17 C -0.335 4.335 18 H 0.080 0.920 19 C -0.014 4.014 20 N -0.921 5.921 21 Si 0.994 3.006 22 H -0.269 1.269 23 H -0.272 1.272 24 H -0.273 1.273 25 C 0.114 3.886 26 O -0.160 6.160 27 C 0.022 3.978 28 C -0.077 4.077 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.155 0.845 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.357 0.643 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.919 -16.697 0.829 33.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.206 4.206 3 C -0.141 4.141 4 C -0.153 4.153 5 C 0.400 3.600 6 O -0.448 6.448 7 N -0.340 5.340 8 C -0.014 4.014 9 C -0.161 4.161 10 C -0.031 4.031 11 H 0.095 0.905 12 N -0.302 5.302 13 C -0.068 4.068 14 C 0.226 3.774 15 O -0.508 6.508 16 N -0.210 5.210 17 C -0.464 4.464 18 H 0.098 0.902 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.818 3.182 22 H -0.194 1.194 23 H -0.197 1.197 24 H -0.198 1.198 25 C -0.009 4.009 26 O -0.056 6.056 27 C -0.030 4.030 28 C -0.133 4.133 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.173 0.827 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.178 0.822 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.121 0.879 45 H 0.108 0.892 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -28.571 -15.919 1.795 32.756 hybrid contribution 1.085 0.665 -0.875 1.544 sum -27.487 -15.254 0.920 31.449 Atomic orbital electron populations 1.20287 0.86334 1.03903 1.03174 1.20579 0.99083 0.90891 1.10089 1.22058 0.90792 1.01303 0.99906 1.21480 0.95216 0.81141 1.17443 1.16449 0.81063 0.85782 0.76720 1.90860 1.86199 1.13964 1.53761 1.48356 1.04827 1.09606 1.71258 1.22215 0.96783 0.78850 1.03514 1.22870 0.92819 0.96692 1.03746 1.22625 0.87436 0.94821 0.98257 0.90517 1.59815 1.01986 1.21227 1.47189 1.21610 0.91029 0.99543 0.94657 1.20807 0.88298 0.82566 0.85718 1.90491 1.78236 1.55596 1.26451 1.41940 1.12204 1.43823 1.23077 1.19686 0.89660 1.29269 1.07803 0.90178 1.26058 1.03850 0.95781 0.95641 1.69674 1.38662 1.33045 1.14761 0.84910 0.77035 0.77969 0.78319 1.19439 1.19682 1.19823 1.22265 0.81106 0.95775 1.01731 1.84066 1.29808 1.20640 1.71133 1.23514 0.79902 0.99021 1.00596 1.20669 1.03110 0.84164 1.05383 0.90407 0.89269 0.91318 0.82684 0.89554 0.89965 0.86884 0.89218 0.82174 0.90832 0.88480 0.77007 0.91312 0.91241 0.91619 0.87935 0.89173 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.17 71.24 0.72 0.06 16 2 C -0.21 -3.13 6.14 -20.06 -0.12 -3.26 16 3 C -0.12 -2.57 10.57 22.39 0.24 -2.34 16 4 C -0.10 -2.44 6.95 24.07 0.17 -2.27 16 5 C 0.61 17.79 7.82 86.44 0.68 18.46 16 6 O -0.57 -20.64 17.12 -4.33 -0.07 -20.71 16 7 N -0.61 -15.23 3.33 -816.52 -2.72 -17.95 16 8 C 0.11 1.87 5.54 86.73 0.48 2.35 16 9 C -0.12 -2.00 6.35 31.78 0.20 -1.79 16 10 C 0.08 1.79 3.38 46.31 0.16 1.95 16 11 H 0.08 1.59 7.83 -2.39 -0.02 1.57 16 12 N -0.67 -19.92 6.04 -488.39 -2.95 -22.87 16 13 C 0.06 2.16 6.03 85.56 0.52 2.67 16 14 C 0.44 20.76 7.82 87.66 0.69 21.45 16 15 O -0.62 -34.11 15.78 -3.05 -0.05 -34.15 16 16 N -0.57 -29.57 5.29 -306.98 -1.62 -31.19 16 17 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 18 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 19 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 20 N -0.92 -50.12 13.05 21.66 0.28 -49.84 16 21 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 C 0.11 3.09 6.60 86.86 0.57 3.66 16 26 O -0.16 -3.01 8.28 -5.08 -0.04 -3.05 16 27 C 0.02 0.30 7.31 24.97 0.18 0.49 16 28 C -0.08 -0.31 10.21 71.23 0.73 0.41 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 0.33 7.13 -2.38 -0.02 0.32 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 33 H 0.09 1.28 7.67 -2.39 -0.02 1.26 16 34 H 0.08 1.31 7.80 -2.39 -0.02 1.29 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.36 10.58 8.14 -89.70 -0.73 9.85 16 38 H 0.07 2.11 8.09 -2.39 -0.02 2.09 16 39 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 40 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 41 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 42 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 43 H 0.07 1.95 8.04 -2.39 -0.02 1.93 16 44 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.11 0.02 7.13 -2.38 -0.02 0.00 16 Total: -1.00 -76.60 388.20 0.90 -75.70 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: -0.44 Total: 35.54 kcal Atomic # 6 Polarization: 16.79 SS G_CDS: 6.49 Total: 23.27 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -7.00 Total: -121.85 kcal Atomic # 8 Polarization: -57.76 SS G_CDS: -0.16 Total: -57.92 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -76.60 0.90 -75.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490820774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.374 kcal (2) G-P(sol) polarization free energy of solvation -76.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds