Wall clock time and date at job start Tue Mar 31 2020 19:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40357 * 126.64924 * 2 1 4 4 C 1.35134 * 107.11544 * 179.83807 * 3 2 1 5 5 O 1.33928 * 108.76678 * 0.43100 * 4 3 2 6 6 C 1.34913 * 109.38236 * 359.72684 * 5 4 3 7 7 C 1.46665 * 125.98533 * 179.97438 * 6 5 4 8 8 O 1.21688 * 119.99783 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99949 * 0.02562 * 7 6 5 10 10 C 1.46501 * 119.99710 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.46784 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47014 * 180.02562 * 11 10 9 13 13 C 1.46899 * 111.00094 * 189.99908 * 12 11 10 14 14 C 1.50704 * 109.47209 * 162.31718 * 13 12 11 15 15 O 1.21287 * 120.00010 * 1.34211 * 14 13 12 16 16 N 1.34776 * 120.00046 * 181.34769 * 14 13 12 17 17 C 1.37092 * 120.00209 * 179.97438 * 16 14 13 18 18 H 1.08006 * 119.99987 * 359.97438 * 17 16 14 19 19 C 1.38951 * 120.00439 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00256 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99711 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46618 * 90.00031 * 21 19 17 23 23 H 1.48494 * 109.46947 * 210.00126 * 21 19 17 24 24 H 1.48496 * 109.47009 * 330.00031 * 21 19 17 25 25 C 1.46899 * 111.00263 * 66.04374 * 12 11 10 26 26 C 1.53000 * 117.49795 * 127.70049 * 25 12 11 27 27 C 1.53002 * 60.00310 * 252.51396 * 26 25 12 28 28 H 1.09007 * 109.47385 * 269.68701 * 1 2 3 29 29 H 1.08993 * 109.47861 * 149.68370 * 1 2 3 30 30 H 1.09002 * 109.47022 * 29.68382 * 1 2 3 31 31 H 1.08000 * 126.44537 * 0.02562 * 3 2 1 32 32 H 1.08000 * 125.61551 * 180.15815 * 4 3 2 33 33 H 0.96999 * 120.00100 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.46841 * 299.99562 * 10 9 7 35 35 H 1.09002 * 109.46806 * 60.00183 * 10 9 7 36 36 H 1.09005 * 109.47353 * 300.00011 * 11 10 9 37 37 H 1.08997 * 109.47339 * 59.99779 * 11 10 9 38 38 H 1.08996 * 109.47538 * 282.31745 * 13 12 11 39 39 H 1.09008 * 109.46763 * 42.31875 * 13 12 11 40 40 H 0.97009 * 119.99883 * 359.97438 * 16 14 13 41 41 H 0.96999 * 120.00095 * 179.97438 * 20 19 17 42 42 H 1.08997 * 115.55069 * 273.41439 * 25 12 11 43 43 H 1.08999 * 117.50023 * 0.02562 * 26 25 12 44 44 H 1.09001 * 117.50089 * 145.02506 * 26 25 12 45 45 H 1.08999 * 117.49583 * 252.51237 * 27 26 25 46 46 H 1.08999 * 117.51832 * 107.48068 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1261 0.0000 4 6 3.6183 0.6743 0.0037 5 8 3.6004 -0.6649 -0.0037 6 6 2.3219 -1.0956 -0.0060 7 6 1.8841 -2.4953 -0.0142 8 8 0.6966 -2.7614 -0.0161 9 7 2.7969 -3.4869 -0.0197 10 6 2.3595 -4.8851 -0.0273 11 6 3.5840 -5.8024 -0.0330 12 7 3.1455 -7.2044 -0.0412 13 6 4.2774 -8.1114 0.1913 14 6 3.7597 -9.4648 0.6056 15 8 2.5650 -9.6620 0.6745 16 7 4.6244 -10.4559 0.8996 17 6 4.1536 -11.6869 1.2770 18 1 3.0897 -11.8623 1.3391 19 6 5.0450 -12.7089 1.5797 20 7 4.5936 -13.8890 1.9409 21 14 6.8851 -12.4052 1.4730 22 1 7.3832 -11.9187 2.7847 23 1 7.5760 -13.6713 1.1198 24 1 7.1587 -11.3843 0.4300 25 6 2.4566 -7.5332 -1.2963 26 6 2.9458 -8.7588 -2.0706 27 6 3.2383 -7.3531 -2.5993 28 1 -0.3634 -0.0056 1.0277 29 1 -0.3634 -0.8870 -0.5187 30 1 -0.3633 0.8928 -0.5089 31 1 2.0307 2.1594 0.0004 32 1 4.5046 1.2914 0.0070 33 1 3.7434 -3.2748 -0.0185 34 1 1.7607 -5.0832 0.8617 35 1 1.7606 -5.0735 -0.9183 36 1 4.1825 -5.6040 -0.9221 37 1 4.1833 -5.6140 0.8578 38 1 4.8585 -8.2098 -0.7256 39 1 4.9105 -7.7071 0.9812 40 1 5.5800 -10.2982 0.8443 41 1 5.2159 -14.6025 2.1518 42 1 1.3883 -7.3181 -1.3165 43 1 3.7786 -9.3213 -1.6484 44 1 2.1993 -9.3505 -2.6003 45 1 2.6840 -7.0201 -3.4768 46 1 4.2634 -6.9903 -2.5252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493348434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:15 Heat of formation + Delta-G solvation = -33.032043 kcal Electronic energy + Delta-G solvation = -28239.734049 eV Core-core repulsion = 24131.847938 eV Total energy + Delta-G solvation = -4107.886111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.66052 -41.14288 -40.47952 -39.06816 -36.50826 -35.89193 -35.05252 -34.35074 -33.68844 -31.74573 -30.64426 -28.82555 -27.71799 -25.87818 -24.65512 -23.53503 -23.06393 -22.18651 -21.57909 -21.09466 -20.72652 -19.86082 -19.12771 -18.13965 -17.66097 -17.44634 -17.28015 -16.94052 -16.68842 -16.32551 -15.97502 -15.45357 -15.24046 -15.13919 -15.03085 -14.79514 -14.42631 -14.32384 -14.04370 -13.93283 -13.87073 -13.58266 -13.51726 -13.22312 -13.06112 -12.78502 -12.74369 -12.39248 -12.29794 -12.14686 -11.96551 -11.61331 -11.47194 -11.32729 -11.06587 -10.66805 -10.36711 -10.29869 -10.19211 -9.55640 -9.19865 -8.37671 -5.97721 0.02915 1.30375 1.37006 1.42287 1.45117 1.63194 2.02200 2.07356 2.09318 2.25167 2.71343 2.87924 3.15988 3.24098 3.70894 3.75076 3.82525 3.92788 3.94946 3.98011 4.04118 4.12382 4.20451 4.35162 4.43056 4.51759 4.54612 4.63790 4.71930 4.74816 4.78248 4.87556 4.94070 4.96372 5.11530 5.13938 5.15327 5.19758 5.27766 5.46667 5.55946 5.85842 5.88117 6.01608 6.09125 6.42808 6.64199 6.94081 7.01076 7.45210 8.04661 8.80269 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022520 B = 0.002035 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.031029 B =13754.164077 C =14161.046590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.097 4.097 3 C -0.238 4.238 4 C 0.017 3.983 5 O -0.168 6.168 6 C -0.117 4.117 7 C 0.599 3.401 8 O -0.556 6.556 9 N -0.704 5.704 10 C 0.133 3.867 11 C 0.055 3.945 12 N -0.505 5.505 13 C 0.049 3.951 14 C 0.457 3.543 15 O -0.598 6.598 16 N -0.597 5.597 17 C -0.321 4.321 18 H 0.053 0.947 19 C -0.019 4.019 20 N -0.938 5.938 21 Si 0.965 3.035 22 H -0.258 1.258 23 H -0.278 1.278 24 H -0.230 1.230 25 C 0.027 3.973 26 C -0.196 4.196 27 C -0.182 4.182 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.181 0.819 32 H 0.257 0.743 33 H 0.417 0.583 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.388 0.612 41 H 0.277 0.723 42 H 0.112 0.888 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.848 33.803 -8.025 35.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.100 4.100 3 C -0.257 4.257 4 C -0.053 4.053 5 O -0.064 6.064 6 C -0.169 4.169 7 C 0.386 3.614 8 O -0.436 6.436 9 N -0.356 5.356 10 C 0.009 3.991 11 C -0.073 4.073 12 N -0.228 5.228 13 C -0.082 4.082 14 C 0.245 3.755 15 O -0.480 6.480 16 N -0.240 5.240 17 C -0.450 4.450 18 H 0.071 0.929 19 C -0.217 4.217 20 N -0.580 5.580 21 Si 0.785 3.215 22 H -0.182 1.182 23 H -0.203 1.203 24 H -0.153 1.153 25 C -0.082 4.082 26 C -0.234 4.234 27 C -0.221 4.221 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.198 0.802 32 H 0.272 0.728 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.142 0.858 40 H 0.223 0.777 41 H 0.087 0.913 42 H 0.129 0.871 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.130 0.870 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.138 32.964 -7.514 34.198 hybrid contribution 1.217 -0.700 -0.338 1.445 sum 6.356 32.264 -7.852 33.809 Atomic orbital electron populations 1.20427 0.88319 1.03543 1.02967 1.21024 0.98155 0.92048 0.98780 1.22096 0.92432 1.00665 1.10459 1.25343 1.01326 0.79654 0.98948 1.84042 1.27210 1.24166 1.70982 1.21571 0.82612 0.94127 1.18573 1.16734 0.85415 0.82733 0.76487 1.90851 1.17292 1.83089 1.52415 1.45625 1.10410 1.05563 1.73956 1.21106 0.97140 0.78630 1.02244 1.22259 0.95767 0.85596 1.03641 1.61261 1.26174 1.02337 1.33040 1.21925 0.92838 0.90316 1.03134 1.20751 0.86586 0.86770 0.81431 1.90567 1.17688 1.83256 1.56507 1.42025 1.08155 1.10437 1.63403 1.18949 0.94102 0.87910 1.44035 0.92863 1.26115 1.05220 0.94164 0.96236 1.69813 1.37762 1.03760 1.46616 0.85367 0.76356 0.79415 0.80374 1.18200 1.20297 1.15339 1.22611 0.98018 1.02263 0.85271 1.23173 1.03704 0.92068 1.04410 1.23515 1.02371 0.97865 0.98381 0.90731 0.91742 0.89300 0.80212 0.72759 0.74553 0.92333 0.91774 0.91276 0.88087 0.89843 0.85775 0.77696 0.91331 0.87077 0.89966 0.89710 0.87030 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 9.82 71.23 0.70 -0.97 16 2 C -0.10 -1.74 6.20 -19.75 -0.12 -1.86 16 3 C -0.24 -2.57 10.83 22.07 0.24 -2.33 16 4 C 0.02 0.13 12.08 67.10 0.81 0.94 16 5 O -0.17 -2.41 10.40 -5.01 -0.05 -2.46 16 6 C -0.12 -2.33 7.13 24.08 0.17 -2.15 16 7 C 0.60 14.28 7.79 86.44 0.67 14.95 16 8 O -0.56 -17.24 14.74 -4.31 -0.06 -17.30 16 9 N -0.70 -13.10 5.55 -467.10 -2.59 -15.69 16 10 C 0.13 2.91 5.67 86.38 0.49 3.40 16 11 C 0.05 1.03 4.96 86.30 0.43 1.46 16 12 N -0.51 -14.42 4.34 -875.51 -3.80 -18.22 16 13 C 0.05 1.43 5.00 85.56 0.43 1.86 16 14 C 0.46 20.27 5.84 87.66 0.51 20.78 16 15 O -0.60 -32.93 14.79 -3.05 -0.05 -32.98 16 16 N -0.60 -27.83 5.09 -306.98 -1.56 -29.39 16 17 C -0.32 -18.78 10.16 84.04 0.85 -17.93 16 18 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 19 C -0.02 -1.08 5.50 84.93 0.47 -0.62 16 20 N -0.94 -57.12 13.96 21.66 0.30 -56.81 16 21 Si 0.96 38.73 27.74 68.60 1.90 40.63 16 22 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 23 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.23 -7.66 6.52 99.48 0.65 -7.02 16 25 C 0.03 0.79 4.55 44.92 0.20 1.00 16 26 C -0.20 -6.17 8.48 30.59 0.26 -5.91 16 27 C -0.18 -3.99 9.26 30.60 0.28 -3.71 16 28 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.06 1.44 6.44 -2.39 -0.02 1.42 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 32 H 0.26 -0.64 8.06 -2.91 -0.02 -0.66 16 33 H 0.42 5.26 8.23 -92.71 -0.76 4.50 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.56 7.30 -2.39 -0.02 1.54 16 36 H 0.07 0.99 6.87 -2.38 -0.02 0.97 16 37 H 0.10 1.56 7.85 -2.39 -0.02 1.54 16 38 H 0.08 2.05 5.99 -2.39 -0.01 2.03 16 39 H 0.12 2.83 7.77 -2.38 -0.02 2.81 16 40 H 0.39 14.87 5.76 -92.70 -0.53 14.33 16 41 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.11 3.45 8.03 -2.39 -0.02 3.43 16 43 H 0.08 2.90 4.91 -2.39 -0.01 2.89 16 44 H 0.08 2.79 8.14 -2.39 -0.02 2.78 16 45 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.11 1.95 7.15 -2.39 -0.02 1.93 16 Total: -1.00 -85.25 379.42 0.17 -85.08 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -0.32 Total: 38.24 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 6.40 Total: 8.90 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -7.65 Total: -120.12 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -0.16 Total: -52.74 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 1.90 Total: 40.63 kcal Total: -85.25 0.17 -85.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493348434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.053 kcal (2) G-P(sol) polarization free energy of solvation -85.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds