Wall clock time and date at job start Tue Mar 31 2020 19:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40361 * 126.64776 * 2 1 4 4 C 1.35127 * 107.11396 * 179.97438 * 3 2 1 5 5 O 1.33927 * 108.76740 * 359.77263 * 4 3 2 6 6 C 1.34915 * 109.38605 * 0.37750 * 5 4 3 7 7 C 1.46655 * 125.98707 * 179.88444 * 6 5 4 8 8 O 1.21694 * 119.99788 * 179.68781 * 7 6 5 9 9 N 1.34779 * 120.00179 * 359.69335 * 7 6 5 10 10 C 1.46500 * 120.00196 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46967 * 325.00170 * 10 9 7 12 12 C 1.52997 * 109.47170 * 204.99986 * 10 9 7 13 13 N 1.46899 * 109.47254 * 54.99822 * 12 10 9 14 14 C 1.46904 * 111.00029 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.46800 * 180.02562 * 14 13 12 16 16 O 1.21289 * 120.00338 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99855 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00193 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00238 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00205 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99909 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00181 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47138 * 89.99534 * 22 20 18 24 24 H 1.48502 * 109.46886 * 209.99398 * 22 20 18 25 25 H 1.48495 * 109.47039 * 329.99454 * 22 20 18 26 26 C 1.52994 * 109.46849 * 84.99779 * 10 9 7 27 27 C 1.52999 * 117.50412 * 8.74867 * 26 10 9 28 28 C 1.53002 * 117.50104 * 300.08575 * 26 10 9 29 29 H 1.09000 * 109.47114 * 270.04594 * 1 2 3 30 30 H 1.08997 * 109.46704 * 30.04204 * 1 2 3 31 31 H 1.08993 * 109.47062 * 150.03964 * 1 2 3 32 32 H 1.08003 * 126.44182 * 359.97137 * 3 2 1 33 33 H 1.08006 * 125.61206 * 180.02562 * 4 3 2 34 34 H 0.96998 * 119.99752 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47153 * 294.99818 * 12 10 9 36 36 H 1.09001 * 109.46832 * 175.00009 * 12 10 9 37 37 H 1.00908 * 110.99847 * 56.04959 * 13 12 10 38 38 H 1.08995 * 109.47167 * 300.00240 * 14 13 12 39 39 H 1.09003 * 109.46442 * 60.00214 * 14 13 12 40 40 H 0.97000 * 119.99567 * 0.02562 * 17 15 14 41 41 H 0.96998 * 120.00315 * 179.97438 * 21 20 18 42 42 H 1.09003 * 115.54830 * 154.41823 * 26 10 9 43 43 H 1.09003 * 117.49323 * 359.97438 * 27 26 10 44 44 H 1.09003 * 117.50071 * 145.01968 * 27 26 10 45 45 H 1.09000 * 117.50257 * 214.97832 * 28 26 10 46 46 H 1.09002 * 117.49965 * 359.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3449 1.1261 0.0000 4 6 3.6184 0.6743 0.0006 5 8 3.6005 -0.6648 0.0060 6 6 2.3219 -1.0956 0.0005 7 6 1.8842 -2.4953 0.0014 8 8 0.6967 -2.7614 0.0018 9 7 2.7970 -3.4869 0.0019 10 6 2.3598 -4.8851 0.0033 11 1 1.4481 -4.9801 0.5933 12 6 3.4556 -5.7615 0.6132 13 7 3.8018 -5.2547 1.9478 14 6 4.8530 -6.0740 2.5657 15 6 5.1805 -5.5253 3.9304 16 8 4.5954 -4.5482 4.3476 17 7 6.1235 -6.1203 4.6875 18 6 6.4211 -5.6215 5.9293 19 1 5.9001 -4.7514 6.3008 20 6 7.3936 -6.2346 6.7096 21 7 8.0279 -7.2930 6.2574 22 14 7.7996 -5.5544 8.4014 23 1 6.9304 -6.2017 9.4167 24 1 9.2233 -5.8333 8.7184 25 1 7.5677 -4.0878 8.4139 26 6 2.0869 -5.3355 -1.4331 27 6 2.4971 -4.3867 -2.5611 28 6 1.0169 -4.5764 -2.2204 29 1 -0.3633 0.0008 1.0277 30 1 -0.3632 0.8896 -0.5145 31 1 -0.3633 -0.8903 -0.5132 32 1 2.0307 2.1595 -0.0004 33 1 4.5047 1.2916 0.0011 34 1 3.7435 -3.2747 0.0013 35 1 4.3385 -5.7362 -0.0254 36 1 3.0963 -6.7873 0.6960 37 1 2.9859 -5.2076 2.5396 38 1 4.5031 -7.1018 2.6620 39 1 5.7458 -6.0512 1.9406 40 1 6.5917 -6.9015 4.3537 41 1 8.7071 -7.7208 6.8019 42 1 2.1819 -6.4058 -1.6163 43 1 2.9611 -3.4414 -2.2797 44 1 2.8617 -4.8328 -3.4865 45 1 0.4082 -5.1471 -2.9217 46 1 0.5070 -3.7563 -1.7148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498728440.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:22 Heat of formation + Delta-G solvation = -27.559448 kcal Electronic energy + Delta-G solvation = -28731.929158 eV Core-core repulsion = 24624.280357 eV Total energy + Delta-G solvation = -4107.648801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.80829 -40.17155 -38.30466 -37.44992 -35.53353 -34.39174 -33.91585 -33.41192 -31.24876 -30.75298 -29.57759 -27.62195 -26.29229 -24.20344 -23.25035 -22.62929 -22.09491 -21.55470 -20.14315 -19.99785 -19.23193 -18.22053 -17.89026 -16.79519 -16.60405 -16.23349 -16.05117 -15.74814 -15.14985 -14.78314 -14.55775 -14.29862 -14.16392 -13.72824 -13.67057 -13.39502 -13.29946 -13.15247 -13.13493 -12.81797 -12.65247 -12.13839 -11.97130 -11.88842 -11.67879 -11.54930 -11.50921 -11.41948 -11.04425 -10.52719 -10.39905 -10.22916 -10.14349 -10.00804 -9.83286 -9.51562 -9.11479 -8.67251 -8.48861 -8.11029 -7.96780 -6.42480 -3.83209 0.97126 2.20573 2.60621 3.09956 3.17267 3.17394 3.26009 3.32108 3.70258 3.90102 4.03165 4.24667 4.55012 4.63493 4.71393 4.77404 4.82223 4.86686 5.04943 5.14472 5.21615 5.24160 5.31690 5.38631 5.40535 5.52670 5.58806 5.60167 5.63373 5.76523 5.81117 5.84052 5.90211 5.94871 5.99920 6.01926 6.18435 6.24327 6.28881 6.42112 6.74036 7.12744 7.48068 7.54630 7.58587 8.05586 8.07964 8.60634 9.17396 9.53599 10.05187 10.75312 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012235 B = 0.002663 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.903391 B =10510.173472 C =12117.936900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.091 4.091 3 C -0.229 4.229 4 C -0.002 4.002 5 O -0.159 6.159 6 C -0.082 4.082 7 C 0.607 3.393 8 O -0.523 6.523 9 N -0.693 5.693 10 C 0.180 3.820 11 H 0.093 0.907 12 C 0.051 3.949 13 N -0.667 5.667 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.582 6.582 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C -0.168 4.168 27 C -0.176 4.176 28 C -0.184 4.184 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.154 0.846 33 H 0.209 0.791 34 H 0.411 0.589 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.351 0.649 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 8.450 -18.940 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.248 4.248 4 C -0.072 4.072 5 O -0.054 6.054 6 C -0.134 4.134 7 C 0.394 3.606 8 O -0.402 6.402 9 N -0.343 5.343 10 C 0.075 3.925 11 H 0.111 0.889 12 C -0.079 4.079 13 N -0.300 5.300 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.466 6.466 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.187 4.187 27 C -0.213 4.213 28 C -0.220 4.220 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.172 0.828 33 H 0.226 0.774 34 H 0.247 0.753 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.170 0.830 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.129 0.871 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.270 9.027 -18.777 23.228 hybrid contribution 0.718 -0.730 0.921 1.378 sum -9.552 8.297 -17.855 21.884 Atomic orbital electron populations 1.20408 0.88312 1.03334 1.02928 1.20621 0.97606 0.91037 1.00090 1.21723 0.92489 1.00101 1.10455 1.24363 0.99951 0.80705 1.02186 1.84094 1.28290 1.22623 1.70399 1.21862 0.81544 0.94850 1.15101 1.16467 0.85763 0.81872 0.76508 1.90765 1.15793 1.82287 1.51396 1.45724 1.10270 1.05308 1.72973 1.20497 0.98150 0.79895 0.93974 0.88858 1.22238 0.97985 0.95862 0.91790 1.60060 1.13994 1.52916 1.02990 1.21673 0.96119 0.94612 0.95751 1.19801 0.84157 0.86767 0.86703 1.90536 1.54228 1.28167 1.73642 1.41859 1.34009 1.28326 1.15873 1.19699 1.18894 1.12585 0.91666 0.87954 1.25258 0.96413 0.96089 1.00177 1.69611 1.25721 1.20481 1.38570 0.85861 0.77478 0.79398 0.81586 1.20418 1.20914 1.19396 1.22688 1.05719 0.98061 0.92275 1.22928 0.98525 1.01226 0.98651 1.23352 0.91730 1.04052 1.02897 0.90800 0.91718 0.89535 0.82813 0.77427 0.75259 0.90207 0.93627 0.82954 0.93781 0.89557 0.77480 0.91878 0.87063 0.88908 0.89202 0.89404 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.82 36.01 0.35 -0.63 16 2 C -0.09 -1.09 6.20 -104.43 -0.65 -1.73 16 3 C -0.23 -2.24 10.83 -39.89 -0.43 -2.67 16 4 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 5 O -0.16 -1.96 10.40 5.00 0.05 -1.90 16 6 C -0.08 -1.08 7.13 -36.80 -0.26 -1.34 16 7 C 0.61 8.29 6.62 -12.86 -0.09 8.21 16 8 O -0.52 -7.86 11.76 5.19 0.06 -7.80 16 9 N -0.69 -8.44 3.33 -55.13 -0.18 -8.62 16 10 C 0.18 2.02 2.67 -67.94 -0.18 1.84 16 11 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 12 C 0.05 0.58 5.23 -3.83 -0.02 0.56 16 13 N -0.67 -10.24 5.85 -115.06 -0.67 -10.91 16 14 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 15 C 0.44 10.30 7.82 -10.99 -0.09 10.22 16 16 O -0.58 -15.82 15.78 5.55 0.09 -15.73 16 17 N -0.56 -14.23 5.29 -10.97 -0.06 -14.29 16 18 C -0.30 -8.35 9.68 -14.94 -0.14 -8.50 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 22 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 26 C -0.17 -1.64 5.70 -90.62 -0.52 -2.16 16 27 C -0.18 -1.70 9.74 -26.69 -0.26 -1.96 16 28 C -0.18 -1.92 9.82 -26.69 -0.26 -2.18 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 1.00 6.44 -51.93 -0.33 0.67 16 32 H 0.15 1.10 8.06 -52.48 -0.42 0.67 16 33 H 0.21 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.41 4.97 8.36 -40.82 -0.34 4.63 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.35 5.88 8.43 -39.29 -0.33 5.54 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.11 0.94 8.11 -51.93 -0.42 0.52 16 43 H 0.09 0.97 6.67 -51.93 -0.35 0.63 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.12 1.47 5.01 -51.93 -0.26 1.21 16 LS Contribution 386.55 15.07 5.83 5.83 Total: -1.00 -32.76 386.55 -7.99 -40.75 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -6.49 Total: 19.08 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.31 Total: 1.33 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.19 Total: -57.63 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: 0.20 Total: -25.44 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.76 -7.99 -40.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498728440.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.193 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds