Wall clock time and date at job start Tue Mar 31 2020 19:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40361 * 126.64776 * 2 1 4 4 C 1.35127 * 107.11396 * 179.97438 * 3 2 1 5 5 O 1.33927 * 108.76740 * 359.77263 * 4 3 2 6 6 C 1.34915 * 109.38605 * 0.37750 * 5 4 3 7 7 C 1.46655 * 125.98707 * 179.88444 * 6 5 4 8 8 O 1.21694 * 119.99788 * 179.68781 * 7 6 5 9 9 N 1.34779 * 120.00179 * 359.69335 * 7 6 5 10 10 C 1.46500 * 120.00196 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46967 * 325.00170 * 10 9 7 12 12 C 1.52997 * 109.47170 * 204.99986 * 10 9 7 13 13 N 1.46899 * 109.47254 * 54.99822 * 12 10 9 14 14 C 1.46904 * 111.00029 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.46800 * 180.02562 * 14 13 12 16 16 O 1.21289 * 120.00338 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99855 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00193 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00238 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00205 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99909 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00181 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47138 * 89.99534 * 22 20 18 24 24 H 1.48502 * 109.46886 * 209.99398 * 22 20 18 25 25 H 1.48495 * 109.47039 * 329.99454 * 22 20 18 26 26 C 1.52994 * 109.46849 * 84.99779 * 10 9 7 27 27 C 1.52999 * 117.50412 * 8.74867 * 26 10 9 28 28 C 1.53002 * 117.50104 * 300.08575 * 26 10 9 29 29 H 1.09000 * 109.47114 * 270.04594 * 1 2 3 30 30 H 1.08997 * 109.46704 * 30.04204 * 1 2 3 31 31 H 1.08993 * 109.47062 * 150.03964 * 1 2 3 32 32 H 1.08003 * 126.44182 * 359.97137 * 3 2 1 33 33 H 1.08006 * 125.61206 * 180.02562 * 4 3 2 34 34 H 0.96998 * 119.99752 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47153 * 294.99818 * 12 10 9 36 36 H 1.09001 * 109.46832 * 175.00009 * 12 10 9 37 37 H 1.00908 * 110.99847 * 56.04959 * 13 12 10 38 38 H 1.08995 * 109.47167 * 300.00240 * 14 13 12 39 39 H 1.09003 * 109.46442 * 60.00214 * 14 13 12 40 40 H 0.97000 * 119.99567 * 0.02562 * 17 15 14 41 41 H 0.96998 * 120.00315 * 179.97438 * 21 20 18 42 42 H 1.09003 * 115.54830 * 154.41823 * 26 10 9 43 43 H 1.09003 * 117.49323 * 359.97438 * 27 26 10 44 44 H 1.09003 * 117.50071 * 145.01968 * 27 26 10 45 45 H 1.09000 * 117.50257 * 214.97832 * 28 26 10 46 46 H 1.09002 * 117.49965 * 359.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3449 1.1261 0.0000 4 6 3.6184 0.6743 0.0006 5 8 3.6005 -0.6648 0.0060 6 6 2.3219 -1.0956 0.0005 7 6 1.8842 -2.4953 0.0014 8 8 0.6967 -2.7614 0.0018 9 7 2.7970 -3.4869 0.0019 10 6 2.3598 -4.8851 0.0033 11 1 1.4481 -4.9801 0.5933 12 6 3.4556 -5.7615 0.6132 13 7 3.8018 -5.2547 1.9478 14 6 4.8530 -6.0740 2.5657 15 6 5.1805 -5.5253 3.9304 16 8 4.5954 -4.5482 4.3476 17 7 6.1235 -6.1203 4.6875 18 6 6.4211 -5.6215 5.9293 19 1 5.9001 -4.7514 6.3008 20 6 7.3936 -6.2346 6.7096 21 7 8.0279 -7.2930 6.2574 22 14 7.7996 -5.5544 8.4014 23 1 6.9304 -6.2017 9.4167 24 1 9.2233 -5.8333 8.7184 25 1 7.5677 -4.0878 8.4139 26 6 2.0869 -5.3355 -1.4331 27 6 2.4971 -4.3867 -2.5611 28 6 1.0169 -4.5764 -2.2204 29 1 -0.3633 0.0008 1.0277 30 1 -0.3632 0.8896 -0.5145 31 1 -0.3633 -0.8903 -0.5132 32 1 2.0307 2.1595 -0.0004 33 1 4.5047 1.2916 0.0011 34 1 3.7435 -3.2747 0.0013 35 1 4.3385 -5.7362 -0.0254 36 1 3.0963 -6.7873 0.6960 37 1 2.9859 -5.2076 2.5396 38 1 4.5031 -7.1018 2.6620 39 1 5.7458 -6.0512 1.9406 40 1 6.5917 -6.9015 4.3537 41 1 8.7071 -7.7208 6.8019 42 1 2.1819 -6.4058 -1.6163 43 1 2.9611 -3.4414 -2.2797 44 1 2.8617 -4.8328 -3.4865 45 1 0.4082 -5.1471 -2.9217 46 1 0.5070 -3.7563 -1.7148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498728440.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:21 Heat of formation + Delta-G solvation = -51.106091 kcal Electronic energy + Delta-G solvation = -28732.950217 eV Core-core repulsion = 24624.280357 eV Total energy + Delta-G solvation = -4108.669860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.65417 -41.13323 -40.11777 -38.44178 -36.71419 -35.86244 -35.24552 -34.48331 -33.26412 -31.66756 -30.60943 -28.60904 -27.78169 -25.87267 -24.16864 -23.52432 -23.01100 -22.37821 -21.26008 -20.94618 -20.77830 -19.90748 -19.12129 -17.99144 -17.64949 -17.38738 -17.03642 -16.85486 -16.50078 -16.35443 -15.95225 -15.64138 -15.23745 -14.99798 -14.87471 -14.76570 -14.37388 -14.09672 -13.98689 -13.87291 -13.65097 -13.51620 -13.40987 -13.07192 -12.82909 -12.77217 -12.73695 -12.56296 -12.42237 -12.28236 -12.12902 -11.51215 -11.37458 -11.06484 -10.87097 -10.65374 -10.35508 -10.07294 -10.01534 -9.53580 -9.34957 -8.47224 -5.95693 0.06583 1.37246 1.41106 1.42085 1.53720 1.75447 2.06064 2.12843 2.27009 2.29099 2.79753 2.99857 3.20359 3.48366 3.74292 3.79973 3.84026 3.94713 4.00294 4.06300 4.26549 4.28527 4.38604 4.46372 4.55033 4.56691 4.61479 4.63049 4.68763 4.76029 4.78882 4.83175 4.93184 5.02646 5.12027 5.20446 5.22890 5.36080 5.40400 5.43520 5.52773 5.85700 5.90359 6.08366 6.31157 6.50698 6.60342 7.09335 7.12808 7.56696 8.12613 8.70195 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012235 B = 0.002663 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.903391 B =10510.173472 C =12117.936900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.101 4.101 3 C -0.236 4.236 4 C 0.005 3.995 5 O -0.174 6.174 6 C -0.118 4.118 7 C 0.601 3.399 8 O -0.547 6.547 9 N -0.689 5.689 10 C 0.181 3.819 11 H 0.074 0.926 12 C 0.059 3.941 13 N -0.680 5.680 14 C 0.067 3.933 15 C 0.437 3.563 16 O -0.625 6.625 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.274 1.274 26 C -0.160 4.160 27 C -0.169 4.169 28 C -0.194 4.194 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.182 0.818 33 H 0.250 0.750 34 H 0.412 0.588 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.340 0.660 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.134 0.866 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.101 0.899 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.916 8.399 -19.946 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.254 4.254 4 C -0.064 4.064 5 O -0.070 6.070 6 C -0.169 4.169 7 C 0.389 3.611 8 O -0.428 6.428 9 N -0.338 5.338 10 C 0.076 3.924 11 H 0.092 0.908 12 C -0.070 4.070 13 N -0.312 5.312 14 C -0.065 4.065 15 C 0.224 3.776 16 O -0.511 6.511 17 N -0.211 5.211 18 C -0.463 4.463 19 H 0.094 0.906 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.180 4.180 27 C -0.206 4.206 28 C -0.231 4.231 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.200 0.800 33 H 0.266 0.734 34 H 0.248 0.752 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.158 0.842 38 H 0.087 0.913 39 H 0.127 0.873 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.152 0.848 43 H 0.099 0.901 44 H 0.126 0.874 45 H 0.120 0.880 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.277 8.941 -19.815 23.635 hybrid contribution 0.387 -0.629 1.193 1.404 sum -8.890 8.312 -18.622 22.246 Atomic orbital electron populations 1.20401 0.87795 1.03743 1.02791 1.21028 0.98361 0.91727 0.99254 1.22088 0.92228 1.00804 1.10324 1.25280 1.01491 0.79835 0.99780 1.84076 1.27913 1.24176 1.70829 1.21894 0.82325 0.94995 1.17706 1.16642 0.85669 0.82513 0.76289 1.90743 1.16612 1.82794 1.52652 1.45722 1.10011 1.05539 1.72504 1.20503 0.97404 0.79536 0.94909 0.90815 1.22292 0.98608 0.96598 0.89544 1.60047 1.13344 1.53570 1.04265 1.21534 0.97656 0.95390 0.91953 1.20952 0.82422 0.85702 0.88492 1.90507 1.55356 1.30098 1.75180 1.41922 1.34836 1.28726 1.15567 1.19637 1.20221 1.12909 0.93567 0.90567 1.26007 0.95673 0.96153 1.03328 1.69664 1.25783 1.20865 1.39773 0.84959 0.77879 0.78372 0.77326 1.19682 1.19417 1.19883 1.22690 1.05077 0.99138 0.91052 1.22941 0.97605 1.00786 0.99251 1.23296 0.92340 1.03904 1.03545 0.91128 0.89241 0.91152 0.80048 0.73435 0.75236 0.88578 0.91480 0.84186 0.91282 0.87273 0.76909 0.91280 0.84799 0.90073 0.87361 0.88040 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.95 9.82 71.24 0.70 -1.25 16 2 C -0.10 -2.43 6.20 -19.74 -0.12 -2.55 16 3 C -0.24 -4.27 10.83 22.07 0.24 -4.03 16 4 C 0.01 0.09 12.08 67.10 0.81 0.90 16 5 O -0.17 -4.27 10.40 -5.01 -0.05 -4.33 16 6 C -0.12 -3.21 7.13 24.07 0.17 -3.04 16 7 C 0.60 17.25 6.62 86.44 0.57 17.82 16 8 O -0.55 -17.51 11.76 -4.33 -0.05 -17.56 16 9 N -0.69 -17.10 3.33 -446.53 -1.49 -18.59 16 10 C 0.18 3.99 2.67 44.99 0.12 4.11 16 11 H 0.07 1.94 7.58 -2.39 -0.02 1.92 16 12 C 0.06 1.20 5.23 86.30 0.45 1.65 16 13 N -0.68 -20.29 5.85 -517.93 -3.03 -23.32 16 14 C 0.07 2.16 6.17 85.55 0.53 2.69 16 15 C 0.44 20.57 7.82 87.65 0.69 21.25 16 16 O -0.62 -34.90 15.78 -3.06 -0.05 -34.95 16 17 N -0.57 -29.21 5.29 -306.99 -1.62 -30.83 16 18 C -0.33 -19.02 9.68 84.04 0.81 -18.20 16 19 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 21 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 22 Si 0.99 43.03 29.55 68.60 2.03 45.06 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 C -0.16 -2.89 5.70 -10.80 -0.06 -2.96 16 27 C -0.17 -3.05 9.74 30.62 0.30 -2.75 16 28 C -0.19 -3.98 9.82 30.62 0.30 -3.68 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.73 6.44 -2.39 -0.02 1.72 16 32 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.25 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.41 10.04 8.36 -92.71 -0.77 9.27 16 35 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.34 11.46 8.43 -89.69 -0.76 10.70 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 41 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 42 H 0.13 1.84 8.11 -2.39 -0.02 1.82 16 43 H 0.08 1.68 6.67 -2.39 -0.02 1.66 16 44 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.09 2.44 5.01 -2.39 -0.01 2.42 16 Total: -1.00 -73.42 386.55 0.77 -72.64 By element: Atomic # 1 Polarization: 52.46 SS G_CDS: -1.22 Total: 51.24 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 5.97 Total: 9.80 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -5.86 Total: -121.91 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: -0.15 Total: -56.84 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -73.42 0.77 -72.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498728440.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.538 kcal (2) G-P(sol) polarization free energy of solvation -73.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds